Wall clock time and date at job start Tue Mar 31 2020 23:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46432 * 2 1 4 4 C 1.50697 * 109.47355 * 119.99905 * 2 1 3 5 5 C 1.38232 * 119.99960 * 330.11132 * 4 2 1 6 6 C 1.38234 * 120.00183 * 179.81059 * 5 4 2 7 7 C 1.38241 * 119.99954 * 0.41925 * 6 5 4 8 8 S 1.76201 * 120.00397 * 179.79222 * 7 6 5 9 9 C 1.81401 * 104.44545 * 270.02383 * 8 7 6 10 10 O 1.42099 * 104.27490 * 26.09391 * 8 7 6 11 11 O 1.42097 * 104.27864 * 153.95132 * 8 7 6 12 12 C 1.38236 * 119.99390 * 359.81406 * 7 6 5 13 13 C 1.38230 * 120.00402 * 359.97438 * 12 7 6 14 14 N 1.46499 * 109.46970 * 240.00388 * 2 1 3 15 15 C 1.46501 * 119.99699 * 305.12896 * 14 2 1 16 16 C 1.34774 * 120.00038 * 125.13842 * 14 2 1 17 17 O 1.21278 * 120.00000 * 359.97438 * 16 14 2 18 18 C 1.50699 * 119.99887 * 179.97438 * 16 14 2 19 19 C 1.53001 * 109.47356 * 179.97438 * 18 16 14 20 20 C 1.50699 * 109.47356 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99897 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00018 * 180.02562 * 20 19 18 23 23 N 1.31507 * 119.99952 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99906 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47304 * 90.00066 * 24 22 20 26 26 H 1.48503 * 109.47017 * 210.00263 * 24 22 20 27 27 H 1.48503 * 109.47432 * 329.99916 * 24 22 20 28 28 H 1.09004 * 109.47087 * 299.99591 * 1 2 3 29 29 H 1.08996 * 109.47688 * 59.99983 * 1 2 3 30 30 H 1.09003 * 109.47044 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.00316 * 359.97438 * 5 4 2 32 32 H 1.08004 * 120.00741 * 180.21137 * 6 5 4 33 33 H 1.08999 * 109.47476 * 59.99927 * 9 8 7 34 34 H 1.09005 * 109.46918 * 180.02562 * 9 8 7 35 35 H 1.08999 * 109.46861 * 299.99265 * 9 8 7 36 36 H 1.08010 * 119.99648 * 179.97438 * 12 7 6 37 37 H 1.08006 * 120.00212 * 179.97438 * 13 12 7 38 38 H 1.09001 * 109.46645 * 95.30266 * 15 14 2 39 39 H 1.08998 * 109.47061 * 215.29776 * 15 14 2 40 40 H 1.09002 * 109.47034 * 335.30123 * 15 14 2 41 41 H 1.08995 * 109.47028 * 299.99583 * 18 16 14 42 42 H 1.09005 * 109.47312 * 59.99336 * 18 16 14 43 43 H 1.08998 * 109.47141 * 300.00615 * 19 18 16 44 44 H 1.09005 * 109.46936 * 59.99738 * 19 18 16 45 45 H 0.97000 * 120.00417 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.2843 -0.6925 2.3927 6 6 1.7432 -1.3474 3.5202 7 6 2.9545 -2.0129 3.4881 8 16 3.5421 -2.8431 4.9269 9 6 4.5120 -1.5890 5.8085 10 8 2.3632 -3.1630 5.6529 11 8 4.3904 -3.8644 4.4203 12 6 3.7048 -2.0266 2.3272 13 6 3.2438 -1.3754 1.1984 14 7 2.0183 -0.6905 -1.1962 15 6 1.5741 -2.0561 -1.4862 16 6 2.8763 -0.0696 -2.0297 17 8 3.2437 1.0610 -1.7897 18 6 3.3790 -0.7802 -3.2599 19 6 4.3312 0.1396 -4.0269 20 6 4.8334 -0.5707 -5.2574 21 1 4.5065 -1.5777 -5.4709 22 6 5.7110 0.0645 -6.1102 23 7 6.1497 -0.5555 -7.1838 24 14 6.2770 1.8060 -5.7406 25 1 7.5065 1.7609 -4.9090 26 1 6.5662 2.5132 -7.0140 27 1 5.2081 2.5283 -5.0051 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.3399 -0.1691 2.4191 32 1 1.1571 -1.3364 4.4274 33 1 3.8709 -0.7440 6.0596 34 1 4.9191 -2.0211 6.7228 35 1 5.3294 -1.2488 5.1727 36 1 4.6514 -2.5462 2.3022 37 1 3.8303 -1.3858 0.2915 38 1 0.7281 -2.0248 -2.1728 39 1 2.3914 -2.6149 -1.9421 40 1 1.2723 -2.5445 -0.5597 41 1 3.9077 -1.6866 -2.9653 42 1 2.5353 -1.0428 -3.8981 43 1 3.8022 1.0460 -4.3214 44 1 5.1749 0.4026 -3.3888 45 1 6.7668 -0.1085 -7.7840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292629819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:17 Heat of formation + Delta-G solvation = -103.778184 kcal Electronic energy + Delta-G solvation = -27073.587079 eV Core-core repulsion = 23182.637254 eV Total energy + Delta-G solvation = -3890.949825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.52506 -40.10024 -38.13655 -37.25745 -36.95072 -35.60710 -34.08426 -33.01050 -32.07730 -30.60620 -30.13461 -28.14747 -27.85355 -25.32519 -23.82980 -23.33973 -21.77285 -20.09996 -20.01387 -19.17838 -18.88649 -17.96704 -17.40923 -17.14752 -17.10544 -16.70126 -16.31072 -16.04379 -15.78418 -15.66741 -14.91265 -14.71549 -14.55336 -14.52678 -14.25887 -14.12373 -13.94584 -13.86855 -13.64222 -13.52196 -13.33190 -13.16051 -13.13811 -13.04146 -12.92802 -12.77728 -12.32969 -12.19270 -12.04691 -12.03330 -11.98988 -11.77962 -11.57008 -11.41385 -10.79671 -10.78844 -10.16837 -10.05603 -9.77379 -8.32776 -6.35869 -0.85948 -0.24124 0.28502 1.31781 1.33782 1.48533 1.58625 1.89543 1.95224 2.33514 2.42826 3.02840 3.03583 3.19130 3.45482 3.69701 3.77293 3.91689 4.06975 4.10732 4.19510 4.24352 4.25368 4.32250 4.35579 4.41285 4.50021 4.61922 4.65567 4.74909 4.83078 4.90306 4.94221 4.96537 4.99851 5.05989 5.13167 5.21943 5.29638 5.35894 5.41502 5.58866 5.63163 5.81133 6.20908 6.29459 6.70396 7.15317 7.29547 8.82930 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.002497 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.116681 B =11211.971712 C =12005.552736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.095 0.905 4 C -0.045 4.045 5 C -0.131 4.131 6 C -0.027 4.027 7 C -0.665 4.665 8 S 2.510 3.490 9 C -0.628 4.628 10 O -0.971 6.971 11 O -0.981 6.981 12 C -0.033 4.033 13 C -0.142 4.142 14 N -0.608 5.608 15 C 0.073 3.927 16 C 0.515 3.485 17 O -0.582 6.582 18 C -0.114 4.114 19 C 0.007 3.993 20 C -0.529 4.529 21 H 0.050 0.950 22 C 0.014 3.986 23 N -0.943 5.943 24 Si 0.938 3.062 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.261 1.261 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.009 0.991 44 H 0.008 0.992 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.992 -1.374 29.657 32.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.059 3.941 3 H 0.112 0.888 4 C -0.046 4.046 5 C -0.150 4.150 6 C -0.045 4.045 7 C -0.751 4.751 8 S 2.694 3.306 9 C -0.781 4.781 10 O -0.969 6.969 11 O -0.978 6.978 12 C -0.052 4.052 13 C -0.161 4.161 14 N -0.340 5.340 15 C -0.069 4.069 16 C 0.306 3.694 17 O -0.462 6.462 18 C -0.153 4.153 19 C -0.031 4.031 20 C -0.567 4.567 21 H 0.068 0.932 22 C -0.184 4.184 23 N -0.584 5.584 24 Si 0.763 3.237 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.186 1.186 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.028 0.972 44 H 0.026 0.974 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.888 -1.654 29.814 32.139 hybrid contribution 0.841 1.285 -1.094 1.885 sum -11.046 -0.369 28.721 30.774 Atomic orbital electron populations 1.22167 0.91034 1.03949 1.03822 1.20096 0.96327 0.96437 0.81214 0.88767 1.20600 0.93905 0.94510 0.95587 1.21496 1.01252 1.00700 0.91533 1.21269 0.92618 0.90789 0.99843 1.30654 1.06921 1.19033 1.18465 1.04722 0.74925 0.76518 0.74475 1.30057 1.15662 1.17596 1.14833 1.93535 1.47566 1.83317 1.72440 1.93544 1.69289 1.55306 1.79659 1.21038 0.98909 0.93920 0.91354 1.21161 0.96730 0.99339 0.98857 1.47989 1.45645 1.16805 1.23592 1.21992 1.01362 0.80743 1.02819 1.21227 0.77479 0.85971 0.84761 1.90625 1.59171 1.20727 1.75631 1.21511 1.00779 0.99781 0.93255 1.19214 0.94720 0.95210 0.93975 1.21411 1.26608 1.01603 1.07058 0.93219 1.25803 0.96044 1.01913 0.94646 1.70019 1.34154 1.39649 1.14549 0.85829 0.79416 0.80608 0.77855 1.19374 1.20340 1.18551 0.88546 0.92170 0.90539 0.81824 0.81721 0.82594 0.82851 0.83504 0.83784 0.86929 0.90696 0.90528 0.89591 0.88238 0.88144 0.97214 0.97397 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.41 71.98 0.61 -1.54 16 2 C 0.16 3.45 3.03 44.24 0.13 3.59 16 3 H 0.09 2.49 6.92 -2.38 -0.02 2.47 16 4 C -0.04 -0.87 4.85 -19.87 -0.10 -0.96 16 5 C -0.13 -1.84 9.14 22.27 0.20 -1.64 16 6 C -0.03 -0.36 9.47 22.27 0.21 -0.15 16 7 C -0.66 -10.51 5.66 22.27 0.13 -10.38 16 8 S 2.51 33.26 5.80 -56.49 -0.33 32.93 16 9 C -0.63 -2.15 10.80 113.37 1.22 -0.92 16 10 O -0.97 -18.26 17.13 -127.65 -2.19 -20.44 16 11 O -0.98 -21.17 17.13 -127.65 -2.19 -23.35 16 12 C -0.03 -0.65 9.47 22.27 0.21 -0.44 16 13 C -0.14 -3.16 8.97 22.27 0.20 -2.96 16 14 N -0.61 -15.26 1.78 -826.80 -1.47 -16.73 16 15 C 0.07 1.36 8.72 127.77 1.11 2.47 16 16 C 0.52 18.03 7.53 87.66 0.66 18.69 16 17 O -0.58 -25.01 15.32 -3.02 -0.05 -25.06 16 18 C -0.11 -4.29 4.26 29.85 0.13 -4.16 16 19 C 0.01 0.34 3.33 29.85 0.10 0.43 16 20 C -0.53 -30.48 9.66 25.60 0.25 -30.23 16 21 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 22 C 0.01 0.81 5.47 84.66 0.46 1.28 16 23 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 24 Si 0.94 46.67 27.47 68.60 1.88 48.55 16 25 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.26 -12.89 6.54 99.48 0.65 -12.24 16 28 H 0.10 0.87 6.51 -2.38 -0.02 0.85 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.91 7.41 -2.39 -0.02 0.89 16 31 H 0.16 1.31 6.16 -2.91 -0.02 1.29 16 32 H 0.17 1.42 7.57 -2.91 -0.02 1.40 16 33 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.15 0.00 8.14 -2.39 -0.02 -0.01 16 35 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.14 2.58 7.57 -2.91 -0.02 2.56 16 37 H 0.11 2.91 7.29 -2.91 -0.02 2.89 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.47 6.66 -2.39 -0.02 1.46 16 40 H 0.09 1.33 7.29 -2.39 -0.02 1.31 16 41 H 0.10 3.46 7.41 -2.39 -0.02 3.44 16 42 H 0.10 3.49 8.11 -2.38 -0.02 3.47 16 43 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 44 H 0.01 0.39 7.53 -2.38 -0.02 0.38 16 45 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -86.25 378.71 2.43 -83.82 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 0.94 Total: 5.98 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 5.53 Total: -26.93 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -1.18 Total: -75.49 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -4.42 Total: -68.86 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.88 Total: 48.55 kcal Atomic # 16 Polarization: 33.26 SS G_CDS: -0.33 Total: 32.93 kcal Total: -86.25 2.43 -83.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292629819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.954 kcal (2) G-P(sol) polarization free energy of solvation -86.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds