Wall clock time and date at job start Tue Mar 31 2020 22:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47501 * 2 1 4 4 C 1.50701 * 109.47384 * 239.99960 * 2 1 3 5 5 H 1.08005 * 120.00026 * 240.00369 * 4 2 1 6 6 C 1.37869 * 119.99881 * 59.99983 * 4 2 1 7 7 N 1.31516 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99961 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47415 * 60.00071 * 8 6 4 10 10 H 1.48505 * 109.47302 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47329 * 300.00073 * 8 6 4 12 12 C 1.53005 * 109.47055 * 119.99845 * 2 1 3 13 13 S 1.81401 * 109.47229 * 300.00123 * 12 2 1 14 14 O 1.42101 * 110.54326 * 68.37145 * 13 12 2 15 15 O 1.42097 * 110.54291 * 291.62192 * 13 12 2 16 16 N 1.65599 * 104.44955 * 179.97438 * 13 12 2 17 17 C 1.46495 * 120.00080 * 65.03499 * 16 13 12 18 18 H 1.09007 * 109.40349 * 5.32044 * 17 16 13 19 19 C 1.53076 * 109.43881 * 245.42195 * 17 16 13 20 20 C 1.53413 * 108.32456 * 191.73391 * 19 17 16 21 21 O 1.42824 * 108.37594 * 64.70128 * 20 19 17 22 22 C 1.35847 * 117.86152 * 310.81008 * 21 20 19 23 23 C 1.39148 * 118.50699 * 197.17347 * 22 21 20 24 24 C 1.37969 * 120.21862 * 180.16183 * 23 22 21 25 25 C 1.38287 * 119.95603 * 0.04256 * 24 23 22 26 26 C 1.38102 * 119.98429 * 359.92863 * 25 24 23 27 27 C 1.38374 * 121.80399 * 17.24266 * 22 21 20 28 28 H 1.09003 * 109.47181 * 300.00540 * 1 2 3 29 29 H 1.09007 * 109.46721 * 59.99766 * 1 2 3 30 30 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47321 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47055 * 299.99954 * 3 2 1 33 33 H 1.09007 * 109.46771 * 60.00028 * 3 2 1 34 34 H 0.97006 * 120.00207 * 179.97438 * 7 6 4 35 35 H 1.08996 * 109.46998 * 179.97438 * 12 2 1 36 36 H 1.09000 * 109.46758 * 59.99813 * 12 2 1 37 37 H 0.97001 * 119.99726 * 245.03671 * 16 13 12 38 38 H 1.08996 * 109.69449 * 72.01270 * 19 17 16 39 39 H 1.08997 * 109.69733 * 311.45472 * 19 17 16 40 40 H 1.09000 * 109.67839 * 184.41829 * 20 19 17 41 41 H 1.09003 * 109.68471 * 304.97342 * 20 19 17 42 42 H 1.08003 * 119.88944 * 0.18963 * 23 22 21 43 43 H 1.08000 * 120.01814 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00861 * 179.89774 * 25 24 23 45 45 H 1.08001 * 119.84331 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1210 -4.0081 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0182 2.8544 15 8 2.0479 1.4100 2.8545 16 7 2.0529 -0.7408 3.9937 17 6 3.5012 -0.7975 4.2065 18 1 3.9975 -0.1330 3.4992 19 6 3.9922 -2.2310 3.9894 20 6 5.4360 -2.3287 4.4989 21 8 5.4313 -2.1081 5.9100 22 6 4.7595 -1.0254 6.3811 23 6 5.0318 -0.5850 7.6726 24 6 4.3676 0.5090 8.1878 25 6 3.4272 1.1706 7.4196 26 6 3.1547 0.7368 6.1371 27 6 3.8200 -0.3595 5.6138 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.7096 1.1618 -3.4844 35 1 3.1299 -0.7216 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 1.4556 -1.2156 4.5927 38 1 3.9602 -2.4734 2.9272 39 1 3.3593 -2.9241 4.5436 40 1 5.8349 -3.3200 4.2837 41 1 6.0496 -1.5715 4.0108 42 1 5.7660 -1.1011 8.2736 43 1 4.5819 0.8483 9.1905 44 1 2.9056 2.0261 7.8226 45 1 2.4195 1.2549 5.5392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295345671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:44 Heat of formation + Delta-G solvation = -87.611082 kcal Electronic energy + Delta-G solvation = -28576.344673 eV Core-core repulsion = 24686.095906 eV Total energy + Delta-G solvation = -3890.248767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.90845 -37.62820 -36.72340 -36.33528 -36.17753 -35.36628 -31.74663 -31.51729 -30.66779 -30.19177 -26.71787 -25.76558 -25.31653 -25.12693 -23.81056 -22.47195 -20.39025 -19.69035 -18.91043 -18.00535 -17.55901 -16.89205 -16.21991 -16.11218 -15.90187 -15.33073 -15.09921 -14.79272 -14.71328 -14.22853 -14.01555 -13.66373 -13.53168 -13.13770 -13.06694 -12.82880 -12.56028 -12.22282 -12.14734 -11.87496 -11.70807 -11.55305 -11.47210 -11.16821 -11.10735 -11.06504 -11.00569 -10.76795 -10.60540 -10.44840 -10.32370 -10.16979 -9.80387 -9.70419 -9.42480 -8.94611 -8.73650 -8.44210 -8.31275 -6.07599 -4.20128 0.73811 1.17472 1.31103 3.02702 3.14958 3.23614 3.29668 3.30670 3.65316 4.20162 4.32714 4.33785 4.44770 4.53852 4.62926 4.83192 4.85446 4.96278 5.08305 5.17689 5.21962 5.28914 5.34568 5.41072 5.46398 5.59583 5.65706 5.75522 5.89641 5.98126 6.14635 6.30554 6.35375 6.45141 6.63621 6.64541 6.74430 6.85213 6.95987 7.04547 7.26446 7.27120 7.45315 7.63186 7.93483 8.04438 8.27957 8.78021 9.45570 10.93678 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.003402 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.279568 B = 8228.344926 C = 9108.294532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.581 4.581 13 S 2.588 3.412 14 O -0.962 6.962 15 O -0.961 6.961 16 N -1.120 6.120 17 C 0.199 3.801 18 H 0.104 0.896 19 C -0.178 4.178 20 C 0.063 3.937 21 O -0.317 6.317 22 C 0.141 3.859 23 C -0.157 4.157 24 C -0.083 4.083 25 C -0.157 4.157 26 C -0.062 4.062 27 C -0.171 4.171 28 H 0.027 0.973 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.414 0.586 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -4.530 17.288 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.687 3.313 14 O -0.952 6.952 15 O -0.951 6.951 16 N -0.874 5.874 17 C 0.091 3.909 18 H 0.122 0.878 19 C -0.217 4.217 20 C -0.013 4.013 21 O -0.231 6.231 22 C 0.095 3.905 23 C -0.175 4.175 24 C -0.102 4.102 25 C -0.175 4.175 26 C -0.081 4.081 27 C -0.174 4.174 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.247 0.753 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.245 -3.660 17.229 19.045 hybrid contribution 0.333 -1.176 -1.117 1.655 sum 7.578 -4.836 16.112 18.450 Atomic orbital electron populations 1.22280 0.96903 1.00662 1.02338 1.17927 0.92835 0.92207 0.88973 1.22279 0.99680 0.97789 1.02402 1.20888 1.31914 1.12140 0.89384 0.92350 1.24936 0.94851 0.94967 0.98941 1.69789 1.36157 1.22499 1.23653 0.86595 0.79139 0.79717 0.82151 1.20262 1.21161 1.20261 1.30562 1.11096 1.12979 1.16879 1.05820 0.74501 0.75372 0.75655 1.93565 1.29331 1.86617 1.85690 1.93557 1.78079 1.37968 1.85469 1.55992 1.12952 1.70908 1.47572 1.19409 0.81148 0.96358 0.93988 0.87849 1.22777 0.97202 0.97518 1.04225 1.23014 0.96426 1.03306 0.78528 1.85977 1.69973 1.42455 1.24707 1.18704 0.91556 0.86948 0.93310 1.20555 1.03537 0.99022 0.94403 1.20950 0.95265 0.94427 0.99525 1.21079 1.00200 1.01476 0.94772 1.21052 0.97740 0.94102 0.95159 1.20024 1.00396 0.99664 0.97282 0.95423 0.88597 0.94444 0.94491 0.88617 0.95322 0.92632 0.86544 0.86141 0.75305 0.88546 0.89444 0.86918 0.91198 0.85300 0.85488 0.85749 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.77 37.16 0.29 -3.68 16 2 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 3 C -0.16 -3.93 7.78 37.16 0.29 -3.64 16 4 C -0.50 -12.87 8.01 -34.44 -0.28 -13.15 16 5 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -23.74 9.35 55.43 0.52 -23.22 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C -0.58 -10.73 5.01 37.16 0.19 -10.55 16 13 S 2.59 45.82 4.38 -107.50 -0.47 45.35 16 14 O -0.96 -19.64 15.70 -57.54 -0.90 -20.55 16 15 O -0.96 -19.20 15.16 -57.54 -0.87 -20.08 16 16 N -1.12 -14.78 4.49 -5.81 -0.03 -14.80 16 17 C 0.20 2.42 2.82 -69.00 -0.19 2.22 16 18 H 0.10 1.29 7.59 -51.93 -0.39 0.89 16 19 C -0.18 -1.71 5.80 -26.48 -0.15 -1.86 16 20 C 0.06 0.55 7.03 37.37 0.26 0.81 16 21 O -0.32 -3.52 10.27 -19.26 -0.20 -3.72 16 22 C 0.14 1.67 6.47 -39.19 -0.25 1.42 16 23 C -0.16 -1.65 9.94 -39.34 -0.39 -2.04 16 24 C -0.08 -0.81 10.04 -39.66 -0.40 -1.21 16 25 C -0.16 -1.71 10.04 -39.61 -0.40 -2.11 16 26 C -0.06 -0.80 9.27 -39.53 -0.37 -1.17 16 27 C -0.17 -2.15 5.56 -104.43 -0.58 -2.73 16 28 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 29 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 33 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.12 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 37 H 0.41 4.77 8.92 -34.47 -0.31 4.46 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 45 H 0.13 1.80 7.68 -52.49 -0.40 1.40 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -31.73 364.03 -10.14 -41.87 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.49 Total: 8.65 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: -2.16 Total: -34.21 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.49 Total: -38.02 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.97 Total: -44.34 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 45.82 SS G_CDS: -0.47 Total: 45.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.73 -10.14 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295345671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.743 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds