Wall clock time and date at job start Tue Mar 31 2020 22:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47501 * 2 1 4 4 C 1.50701 * 109.47384 * 239.99960 * 2 1 3 5 5 H 1.08005 * 120.00026 * 240.00369 * 4 2 1 6 6 C 1.37869 * 119.99881 * 59.99983 * 4 2 1 7 7 N 1.31516 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99961 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47415 * 60.00071 * 8 6 4 10 10 H 1.48505 * 109.47302 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47329 * 300.00073 * 8 6 4 12 12 C 1.53005 * 109.47055 * 119.99845 * 2 1 3 13 13 S 1.81401 * 109.47229 * 300.00123 * 12 2 1 14 14 O 1.42101 * 110.54326 * 68.37145 * 13 12 2 15 15 O 1.42097 * 110.54291 * 291.62192 * 13 12 2 16 16 N 1.65599 * 104.44955 * 179.97438 * 13 12 2 17 17 C 1.46495 * 120.00080 * 65.03499 * 16 13 12 18 18 H 1.09007 * 109.40349 * 5.32044 * 17 16 13 19 19 C 1.53076 * 109.43881 * 245.42195 * 17 16 13 20 20 C 1.53413 * 108.32456 * 191.73391 * 19 17 16 21 21 O 1.42824 * 108.37594 * 64.70128 * 20 19 17 22 22 C 1.35847 * 117.86152 * 310.81008 * 21 20 19 23 23 C 1.39148 * 118.50699 * 197.17347 * 22 21 20 24 24 C 1.37969 * 120.21862 * 180.16183 * 23 22 21 25 25 C 1.38287 * 119.95603 * 0.04256 * 24 23 22 26 26 C 1.38102 * 119.98429 * 359.92863 * 25 24 23 27 27 C 1.38374 * 121.80399 * 17.24266 * 22 21 20 28 28 H 1.09003 * 109.47181 * 300.00540 * 1 2 3 29 29 H 1.09007 * 109.46721 * 59.99766 * 1 2 3 30 30 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47321 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47055 * 299.99954 * 3 2 1 33 33 H 1.09007 * 109.46771 * 60.00028 * 3 2 1 34 34 H 0.97006 * 120.00207 * 179.97438 * 7 6 4 35 35 H 1.08996 * 109.46998 * 179.97438 * 12 2 1 36 36 H 1.09000 * 109.46758 * 59.99813 * 12 2 1 37 37 H 0.97001 * 119.99726 * 245.03671 * 16 13 12 38 38 H 1.08996 * 109.69449 * 72.01270 * 19 17 16 39 39 H 1.08997 * 109.69733 * 311.45472 * 19 17 16 40 40 H 1.09000 * 109.67839 * 184.41829 * 20 19 17 41 41 H 1.09003 * 109.68471 * 304.97342 * 20 19 17 42 42 H 1.08003 * 119.88944 * 0.18963 * 23 22 21 43 43 H 1.08000 * 120.01814 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00861 * 179.89774 * 25 24 23 45 45 H 1.08001 * 119.84331 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1210 -4.0081 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0182 2.8544 15 8 2.0479 1.4100 2.8545 16 7 2.0529 -0.7408 3.9937 17 6 3.5012 -0.7975 4.2065 18 1 3.9975 -0.1330 3.4992 19 6 3.9922 -2.2310 3.9894 20 6 5.4360 -2.3287 4.4989 21 8 5.4313 -2.1081 5.9100 22 6 4.7595 -1.0254 6.3811 23 6 5.0318 -0.5850 7.6726 24 6 4.3676 0.5090 8.1878 25 6 3.4272 1.1706 7.4196 26 6 3.1547 0.7368 6.1371 27 6 3.8200 -0.3595 5.6138 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.7096 1.1618 -3.4844 35 1 3.1299 -0.7216 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 1.4556 -1.2156 4.5927 38 1 3.9602 -2.4734 2.9272 39 1 3.3593 -2.9241 4.5436 40 1 5.8349 -3.3200 4.2837 41 1 6.0496 -1.5715 4.0108 42 1 5.7660 -1.1011 8.2736 43 1 4.5819 0.8483 9.1905 44 1 2.9056 2.0261 7.8226 45 1 2.4195 1.2549 5.5392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295345671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:43 Heat of formation + Delta-G solvation = -107.968634 kcal Electronic energy + Delta-G solvation = -28577.227443 eV Core-core repulsion = 24686.095906 eV Total energy + Delta-G solvation = -3891.131537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.72441 -38.42408 -38.18205 -38.13918 -37.22355 -36.89574 -33.64131 -32.44838 -31.48509 -31.03670 -28.34886 -27.70112 -27.25022 -26.00521 -24.61116 -23.33271 -21.49419 -21.12222 -20.33970 -18.94524 -18.83259 -17.95414 -17.74251 -17.13627 -17.05471 -16.81993 -16.59148 -16.09355 -15.80156 -15.13286 -15.01795 -14.85888 -14.68069 -14.49764 -14.43378 -14.31156 -13.86636 -13.61265 -13.37474 -13.08276 -13.02047 -12.86438 -12.82073 -12.73917 -12.59010 -12.51193 -12.34098 -12.18445 -12.15980 -11.97088 -11.79415 -11.57222 -11.48555 -11.36467 -10.76492 -10.49415 -10.40815 -9.79898 -9.14271 -8.02658 -6.21480 -0.67772 0.31628 0.45854 1.46270 1.46833 1.53717 1.81973 2.36881 2.44600 2.78658 2.82890 3.19573 3.26930 3.45907 3.66236 3.75225 3.87361 4.02214 4.03290 4.19171 4.23698 4.32054 4.48804 4.53099 4.57950 4.60104 4.64312 4.70697 4.84472 4.85950 4.96203 5.00550 5.05329 5.07988 5.15403 5.32494 5.38069 5.49789 5.51120 5.60848 5.64859 5.84613 5.96634 6.01010 6.11084 6.33563 6.47311 6.83477 7.47118 8.97055 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.003402 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.279568 B = 8228.344926 C = 9108.294532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.290 1.290 11 H -0.270 1.270 12 C -0.583 4.583 13 S 2.608 3.392 14 O -0.992 6.992 15 O -0.987 6.987 16 N -1.103 6.103 17 C 0.191 3.809 18 H 0.097 0.903 19 C -0.175 4.175 20 C 0.058 3.942 21 O -0.324 6.324 22 C 0.131 3.869 23 C -0.161 4.161 24 C -0.077 4.077 25 C -0.164 4.164 26 C -0.087 4.087 27 C -0.185 4.185 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.423 0.577 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.141 0.859 41 H 0.074 0.926 42 H 0.148 0.852 43 H 0.159 0.841 44 H 0.140 0.860 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.470 -6.342 18.661 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 C -0.218 4.218 4 C -0.556 4.556 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.216 1.216 11 H -0.195 1.195 12 C -0.716 4.716 13 S 2.706 3.294 14 O -0.982 6.982 15 O -0.977 6.977 16 N -0.861 5.861 17 C 0.083 3.917 18 H 0.115 0.885 19 C -0.214 4.214 20 C -0.017 4.017 21 O -0.238 6.238 22 C 0.085 3.915 23 C -0.179 4.179 24 C -0.095 4.095 25 C -0.182 4.182 26 C -0.106 4.106 27 C -0.187 4.187 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.259 0.741 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.159 0.841 41 H 0.092 0.908 42 H 0.166 0.834 43 H 0.177 0.823 44 H 0.157 0.843 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.041 -5.482 18.604 21.399 hybrid contribution -0.195 -0.592 -1.446 1.574 sum 8.847 -6.074 17.158 20.237 Atomic orbital electron populations 1.22222 0.97948 1.00501 1.01234 1.17911 0.92189 0.92143 0.90929 1.22210 0.99884 0.98405 1.01288 1.21274 1.31697 1.12369 0.90220 0.91476 1.25685 0.95186 0.95635 1.01729 1.69944 1.37211 1.23727 1.23882 0.85676 0.78816 0.78713 0.78790 1.19664 1.21618 1.19537 1.30477 1.12705 1.13520 1.14906 1.04939 0.73539 0.75004 0.75909 1.93515 1.31419 1.87026 1.86256 1.93520 1.78349 1.39871 1.85944 1.55495 1.13969 1.70443 1.46174 1.19639 0.79877 0.98162 0.93983 0.88488 1.22791 0.97813 0.95509 1.05289 1.23269 0.95931 1.05072 0.77441 1.85972 1.69773 1.42062 1.25980 1.18889 0.91604 0.87189 0.93850 1.20913 1.03709 0.99179 0.94115 1.21310 0.93975 0.93604 1.00610 1.21336 1.00593 1.02035 0.94209 1.21077 0.98403 0.94905 0.96215 1.20059 1.01149 0.99989 0.97549 0.95131 0.91084 0.94046 0.93960 0.91167 0.94982 0.92979 0.84143 0.84024 0.74132 0.87162 0.88956 0.84118 0.90751 0.83409 0.82314 0.84264 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.90 7.77 71.98 0.56 -7.34 16 2 C 0.07 3.29 0.52 -52.93 -0.03 3.26 16 3 C -0.16 -7.78 7.78 71.98 0.56 -7.22 16 4 C -0.52 -25.97 8.01 25.60 0.21 -25.77 16 5 H 0.07 3.18 7.74 -2.91 -0.02 3.16 16 6 C 0.02 0.88 5.15 84.65 0.44 1.32 16 7 N -0.91 -49.77 9.35 21.44 0.20 -49.57 16 8 Si 0.95 41.16 29.54 68.60 2.03 43.18 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 C -0.58 -20.69 5.01 71.98 0.36 -20.33 16 13 S 2.61 91.38 4.38 -56.49 -0.25 91.13 16 14 O -0.99 -40.55 15.70 -127.65 -2.00 -42.56 16 15 O -0.99 -39.79 15.16 -127.65 -1.94 -41.72 16 16 N -1.10 -28.12 4.49 -172.29 -0.77 -28.90 16 17 C 0.19 4.40 2.82 44.30 0.12 4.52 16 18 H 0.10 2.33 7.59 -2.38 -0.02 2.32 16 19 C -0.17 -2.93 5.80 30.76 0.18 -2.75 16 20 C 0.06 0.86 7.03 72.12 0.51 1.36 16 21 O -0.32 -6.43 10.27 -91.83 -0.94 -7.38 16 22 C 0.13 2.88 6.47 22.52 0.15 3.02 16 23 C -0.16 -3.00 9.94 22.42 0.22 -2.78 16 24 C -0.08 -1.30 10.04 22.22 0.22 -1.08 16 25 C -0.16 -3.37 10.04 22.25 0.22 -3.15 16 26 C -0.09 -2.24 9.27 22.30 0.21 -2.03 16 27 C -0.18 -4.48 5.56 -19.74 -0.11 -4.59 16 28 H 0.03 1.43 5.46 -2.39 -0.01 1.42 16 29 H 0.07 3.82 6.07 -2.38 -0.01 3.81 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 33 H 0.03 1.49 5.46 -2.38 -0.01 1.48 16 34 H 0.26 13.76 8.31 -92.70 -0.77 12.99 16 35 H 0.14 4.25 8.14 -2.39 -0.02 4.23 16 36 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 37 H 0.42 9.37 8.92 -96.75 -0.86 8.51 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 44 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.11 3.17 7.68 -2.91 -0.02 3.15 16 Total: -1.00 -68.54 364.03 0.28 -68.26 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.14 Total: 31.08 kcal Atomic # 6 Polarization: -67.35 SS G_CDS: 3.82 Total: -63.53 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -0.57 Total: -78.46 kcal Atomic # 8 Polarization: -86.78 SS G_CDS: -4.88 Total: -91.66 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 91.38 SS G_CDS: -0.25 Total: 91.13 kcal Total: -68.54 0.28 -68.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295345671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.711 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds