Wall clock time and date at job start Tue Mar 31 2020 22:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46916 * 2 1 4 4 C 1.50692 * 109.47012 * 239.99534 * 2 1 3 5 5 H 1.08003 * 120.00163 * 239.99687 * 4 2 1 6 6 C 1.37882 * 120.00317 * 60.00578 * 4 2 1 7 7 N 1.31514 * 119.99441 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00371 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46971 * 60.00041 * 8 6 4 10 10 H 1.48507 * 109.47265 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47304 * 299.99933 * 8 6 4 12 12 C 1.53002 * 109.46735 * 119.99836 * 2 1 3 13 13 S 1.81395 * 109.47146 * 299.99876 * 12 2 1 14 14 O 1.42099 * 110.54699 * 291.74323 * 13 12 2 15 15 O 1.42105 * 110.54411 * 68.49873 * 13 12 2 16 16 N 1.65603 * 104.45125 * 180.11818 * 13 12 2 17 17 C 1.46502 * 119.99665 * 62.94468 * 16 13 12 18 18 H 1.09003 * 109.43504 * 335.61684 * 17 16 13 19 19 C 1.53060 * 109.43882 * 95.53074 * 17 16 13 20 20 C 1.53394 * 108.31837 * 168.25202 * 19 17 16 21 21 O 1.42822 * 108.32474 * 295.19943 * 20 19 17 22 22 C 1.35848 * 117.84838 * 49.22780 * 21 20 19 23 23 C 1.39144 * 118.49218 * 162.91560 * 22 21 20 24 24 C 1.37972 * 120.21336 * 179.77218 * 23 22 21 25 25 C 1.38290 * 119.95837 * 0.02562 * 24 23 22 26 26 C 1.38106 * 119.98126 * 0.06840 * 25 24 23 27 27 C 1.38368 * 121.80781 * 342.82594 * 22 21 20 28 28 H 1.08994 * 109.47743 * 300.00102 * 1 2 3 29 29 H 1.09009 * 109.47367 * 60.00403 * 1 2 3 30 30 H 1.09004 * 109.47607 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46753 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47355 * 299.99585 * 3 2 1 33 33 H 1.08998 * 109.47299 * 60.00331 * 3 2 1 34 34 H 0.97004 * 119.99712 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46600 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.47265 * 60.00343 * 12 2 1 37 37 H 0.96996 * 120.00351 * 242.94800 * 16 13 12 38 38 H 1.08999 * 109.69824 * 287.91680 * 19 17 16 39 39 H 1.09005 * 109.69924 * 48.51245 * 19 17 16 40 40 H 1.09003 * 109.68852 * 175.50025 * 20 19 17 41 41 H 1.09001 * 109.74383 * 54.92993 * 20 19 17 42 42 H 1.08003 * 119.89798 * 359.75398 * 23 22 21 43 43 H 1.08003 * 120.02052 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00765 * 180.09583 * 25 24 23 45 45 H 1.08003 * 119.83996 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8279 -2.5199 -4.0080 10 1 1.8269 -0.4201 -5.2204 11 1 3.8075 -1.1193 -4.0076 12 6 2.0399 -0.7212 1.2493 13 16 1.4352 0.1339 2.7303 14 8 2.0458 1.4112 2.8530 15 8 0.0282 -0.0206 2.8559 16 7 2.0560 -0.7384 3.9937 17 6 3.5065 -0.8297 4.1780 18 1 4.0047 -0.6635 3.2228 19 6 3.9605 0.2337 5.1809 20 6 5.4108 -0.0673 5.5794 21 8 5.4363 -1.3165 6.2714 22 6 4.7976 -2.3711 5.7010 23 6 5.1015 -3.6527 6.1493 24 6 4.4706 -4.7490 5.5982 25 6 3.5333 -4.5749 4.5964 26 6 3.2306 -3.3044 4.1476 27 6 3.8611 -2.2002 4.6968 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7083 1.1607 -3.4845 35 1 3.1299 -0.7208 1.2495 36 1 1.6766 -1.7489 1.2493 37 1 1.4593 -1.1890 4.6116 38 1 3.9038 1.2204 4.7212 39 1 3.3222 0.2021 6.0641 40 1 5.7836 0.7218 6.2324 41 1 6.0327 -0.1295 4.6864 42 1 5.8339 -3.7900 6.9312 43 1 4.7086 -5.7424 5.9488 44 1 3.0378 -5.4323 4.1655 45 1 2.4985 -3.1711 3.3648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295345676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:48 Heat of formation + Delta-G solvation = -87.188455 kcal Electronic energy + Delta-G solvation = -28642.676663 eV Core-core repulsion = 24752.446222 eV Total energy + Delta-G solvation = -3890.230441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.93057 -37.65879 -36.72108 -36.32865 -36.15840 -35.34780 -31.71991 -31.51636 -30.67595 -30.23541 -26.72336 -25.76092 -25.29814 -25.12946 -23.82343 -22.51194 -20.36562 -19.67385 -18.85297 -18.10430 -17.55371 -16.88934 -16.17756 -16.05911 -15.89713 -15.35357 -15.09321 -14.78518 -14.72022 -14.21689 -14.08101 -13.69625 -13.53354 -13.14720 -13.05460 -12.78054 -12.55352 -12.23147 -12.15194 -11.88795 -11.76216 -11.50013 -11.45804 -11.18211 -11.08791 -11.05483 -10.98592 -10.75415 -10.58395 -10.43376 -10.31436 -10.15833 -9.81406 -9.69679 -9.40872 -8.98676 -8.73167 -8.43156 -8.33995 -6.06655 -4.18861 0.74282 1.11931 1.26428 3.02998 3.15639 3.24768 3.30534 3.32016 3.60237 4.16965 4.32141 4.36318 4.50726 4.56447 4.65216 4.80291 4.85748 4.93338 5.07912 5.18696 5.21336 5.27937 5.36647 5.41343 5.45802 5.61804 5.68421 5.81425 5.90484 6.02023 6.10283 6.29092 6.31804 6.38693 6.59282 6.65254 6.74934 6.85704 6.96385 7.04857 7.25118 7.27082 7.45918 7.64355 7.94012 8.05399 8.29012 8.79348 9.46754 10.94663 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003706 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.278187 B = 7553.497503 C = 8349.447666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.590 3.410 14 O -0.961 6.961 15 O -0.962 6.962 16 N -1.121 6.121 17 C 0.202 3.798 18 H 0.097 0.903 19 C -0.178 4.178 20 C 0.063 3.937 21 O -0.318 6.318 22 C 0.144 3.856 23 C -0.155 4.155 24 C -0.083 4.083 25 C -0.155 4.155 26 C -0.069 4.069 27 C -0.172 4.172 28 H 0.027 0.973 29 H 0.096 0.904 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.414 0.586 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.769 -6.842 16.191 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.081 3.919 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.716 4.716 13 S 2.688 3.312 14 O -0.951 6.951 15 O -0.952 6.952 16 N -0.876 5.876 17 C 0.094 3.906 18 H 0.115 0.885 19 C -0.218 4.218 20 C -0.013 4.013 21 O -0.232 6.232 22 C 0.098 3.902 23 C -0.174 4.174 24 C -0.101 4.101 25 C -0.173 4.173 26 C -0.087 4.087 27 C -0.174 4.174 28 H 0.045 0.955 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.247 0.753 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.340 -5.808 16.213 18.721 hybrid contribution 0.345 -1.179 -1.090 1.643 sum 7.686 -6.987 15.122 18.346 Atomic orbital electron populations 1.22276 0.96892 1.00655 1.02321 1.17921 0.92831 0.92199 0.88954 1.22277 0.99668 0.97787 1.02401 1.20888 1.31862 1.12126 0.89366 0.92359 1.24931 0.94854 0.94962 0.98924 1.69789 1.36160 1.22550 1.23629 0.86597 0.79152 0.79727 0.82147 1.20266 1.21160 1.20269 1.30546 1.11163 1.12955 1.16943 1.05763 0.74474 0.75354 0.75571 1.93541 1.78104 1.37991 1.85461 1.93564 1.29378 1.86618 1.85677 1.56027 1.12652 1.72105 1.46786 1.19380 0.80993 0.91058 0.99169 0.88525 1.22811 0.96638 1.01288 1.01028 1.23044 0.96674 0.83658 0.97924 1.85976 1.71240 1.18130 1.47807 1.18702 0.91699 0.87529 0.92293 1.20580 1.03494 0.89559 1.03720 1.20966 0.95348 0.98137 0.95637 1.21074 1.00021 0.97206 0.98985 1.20997 0.97983 0.91476 0.98274 1.19964 1.00758 0.95930 1.00771 0.95453 0.88586 0.94450 0.94505 0.88622 0.95308 0.92655 0.86550 0.86196 0.75278 0.87780 0.89731 0.86967 0.91223 0.85253 0.85447 0.85643 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.77 37.16 0.29 -3.68 16 2 C 0.08 1.96 0.52 -155.67 -0.08 1.88 16 3 C -0.16 -3.92 7.77 37.16 0.29 -3.63 16 4 C -0.50 -12.92 8.01 -34.44 -0.28 -13.20 16 5 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.77 9.35 55.43 0.52 -23.25 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 C -0.58 -10.88 4.85 37.16 0.18 -10.70 16 13 S 2.59 45.91 4.42 -107.50 -0.47 45.44 16 14 O -0.96 -19.01 15.14 -57.54 -0.87 -19.88 16 15 O -0.96 -19.69 15.71 -57.54 -0.90 -20.59 16 16 N -1.12 -14.90 4.61 -5.82 -0.03 -14.93 16 17 C 0.20 2.47 2.71 -69.02 -0.19 2.28 16 18 H 0.10 1.15 6.99 -51.93 -0.36 0.78 16 19 C -0.18 -1.97 5.79 -26.50 -0.15 -2.13 16 20 C 0.06 0.58 7.03 37.36 0.26 0.85 16 21 O -0.32 -3.57 10.27 -19.26 -0.20 -3.77 16 22 C 0.14 1.67 6.47 -39.20 -0.25 1.41 16 23 C -0.15 -1.57 9.94 -39.34 -0.39 -1.96 16 24 C -0.08 -0.75 10.04 -39.66 -0.40 -1.15 16 25 C -0.15 -1.53 10.04 -39.61 -0.40 -1.93 16 26 C -0.07 -0.78 9.21 -39.53 -0.36 -1.14 16 27 C -0.17 -2.03 5.49 -104.44 -0.57 -2.60 16 28 H 0.03 0.63 5.47 -51.93 -0.28 0.34 16 29 H 0.10 2.51 6.07 -51.92 -0.32 2.20 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.12 1.95 7.32 -51.92 -0.38 1.57 16 36 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 37 H 0.41 4.86 8.72 -34.48 -0.30 4.56 16 38 H 0.10 1.20 7.81 -51.93 -0.41 0.80 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.13 1.38 7.70 -52.48 -0.40 0.98 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -31.54 361.84 -10.07 -41.61 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.40 Total: 8.66 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: -2.15 Total: -34.08 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.49 Total: -38.18 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -1.97 Total: -44.24 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 45.91 SS G_CDS: -0.47 Total: 45.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.54 -10.07 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295345676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.582 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds