Wall clock time and date at job start Tue Mar 31 2020 22:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46916 * 2 1 4 4 C 1.50692 * 109.47012 * 239.99534 * 2 1 3 5 5 H 1.08003 * 120.00163 * 239.99687 * 4 2 1 6 6 C 1.37882 * 120.00317 * 60.00578 * 4 2 1 7 7 N 1.31514 * 119.99441 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00371 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46971 * 60.00041 * 8 6 4 10 10 H 1.48507 * 109.47265 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47304 * 299.99933 * 8 6 4 12 12 C 1.53002 * 109.46735 * 119.99836 * 2 1 3 13 13 S 1.81395 * 109.47146 * 299.99876 * 12 2 1 14 14 O 1.42099 * 110.54699 * 291.74323 * 13 12 2 15 15 O 1.42105 * 110.54411 * 68.49873 * 13 12 2 16 16 N 1.65603 * 104.45125 * 180.11818 * 13 12 2 17 17 C 1.46502 * 119.99665 * 62.94468 * 16 13 12 18 18 H 1.09003 * 109.43504 * 335.61684 * 17 16 13 19 19 C 1.53060 * 109.43882 * 95.53074 * 17 16 13 20 20 C 1.53394 * 108.31837 * 168.25202 * 19 17 16 21 21 O 1.42822 * 108.32474 * 295.19943 * 20 19 17 22 22 C 1.35848 * 117.84838 * 49.22780 * 21 20 19 23 23 C 1.39144 * 118.49218 * 162.91560 * 22 21 20 24 24 C 1.37972 * 120.21336 * 179.77218 * 23 22 21 25 25 C 1.38290 * 119.95837 * 0.02562 * 24 23 22 26 26 C 1.38106 * 119.98126 * 0.06840 * 25 24 23 27 27 C 1.38368 * 121.80781 * 342.82594 * 22 21 20 28 28 H 1.08994 * 109.47743 * 300.00102 * 1 2 3 29 29 H 1.09009 * 109.47367 * 60.00403 * 1 2 3 30 30 H 1.09004 * 109.47607 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46753 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47355 * 299.99585 * 3 2 1 33 33 H 1.08998 * 109.47299 * 60.00331 * 3 2 1 34 34 H 0.97004 * 119.99712 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46600 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.47265 * 60.00343 * 12 2 1 37 37 H 0.96996 * 120.00351 * 242.94800 * 16 13 12 38 38 H 1.08999 * 109.69824 * 287.91680 * 19 17 16 39 39 H 1.09005 * 109.69924 * 48.51245 * 19 17 16 40 40 H 1.09003 * 109.68852 * 175.50025 * 20 19 17 41 41 H 1.09001 * 109.74383 * 54.92993 * 20 19 17 42 42 H 1.08003 * 119.89798 * 359.75398 * 23 22 21 43 43 H 1.08003 * 120.02052 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00765 * 180.09583 * 25 24 23 45 45 H 1.08003 * 119.83996 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8279 -2.5199 -4.0080 10 1 1.8269 -0.4201 -5.2204 11 1 3.8075 -1.1193 -4.0076 12 6 2.0399 -0.7212 1.2493 13 16 1.4352 0.1339 2.7303 14 8 2.0458 1.4112 2.8530 15 8 0.0282 -0.0206 2.8559 16 7 2.0560 -0.7384 3.9937 17 6 3.5065 -0.8297 4.1780 18 1 4.0047 -0.6635 3.2228 19 6 3.9605 0.2337 5.1809 20 6 5.4108 -0.0673 5.5794 21 8 5.4363 -1.3165 6.2714 22 6 4.7976 -2.3711 5.7010 23 6 5.1015 -3.6527 6.1493 24 6 4.4706 -4.7490 5.5982 25 6 3.5333 -4.5749 4.5964 26 6 3.2306 -3.3044 4.1476 27 6 3.8611 -2.2002 4.6968 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7083 1.1607 -3.4845 35 1 3.1299 -0.7208 1.2495 36 1 1.6766 -1.7489 1.2493 37 1 1.4593 -1.1890 4.6116 38 1 3.9038 1.2204 4.7212 39 1 3.3222 0.2021 6.0641 40 1 5.7836 0.7218 6.2324 41 1 6.0327 -0.1295 4.6864 42 1 5.8339 -3.7900 6.9312 43 1 4.7086 -5.7424 5.9488 44 1 3.0378 -5.4323 4.1655 45 1 2.4985 -3.1711 3.3648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295345676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:46 Heat of formation + Delta-G solvation = -107.224107 kcal Electronic energy + Delta-G solvation = -28643.545474 eV Core-core repulsion = 24752.446222 eV Total energy + Delta-G solvation = -3891.099252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.73537 -38.42110 -38.18014 -38.13896 -37.22383 -36.87717 -33.64165 -32.46272 -31.46328 -31.03531 -28.36508 -27.69467 -27.25061 -26.01175 -24.63451 -23.31323 -21.52633 -21.05617 -20.30771 -19.00724 -18.84465 -17.95788 -17.72580 -17.12605 -17.01057 -16.77165 -16.61034 -16.08975 -15.83702 -15.12428 -14.99526 -14.82561 -14.73827 -14.55403 -14.42670 -14.29661 -13.85932 -13.54837 -13.44546 -13.06952 -13.01397 -12.87176 -12.85434 -12.77904 -12.55685 -12.52442 -12.27453 -12.18645 -12.15965 -11.95025 -11.82662 -11.57029 -11.43701 -11.40386 -10.79524 -10.46369 -10.40734 -9.79076 -9.13011 -8.02927 -6.21357 -0.67665 0.32032 0.47957 1.45504 1.46252 1.53079 1.81718 2.36169 2.44313 2.78659 2.81793 3.19402 3.29403 3.43045 3.66832 3.75307 3.84323 3.99255 4.03385 4.17668 4.25900 4.31431 4.49456 4.53049 4.58581 4.60588 4.64266 4.68765 4.85135 4.86255 4.97578 5.02826 5.06453 5.08253 5.13376 5.34098 5.38245 5.50494 5.52267 5.62185 5.64759 5.86228 5.97378 5.99822 6.11366 6.34011 6.46856 6.83085 7.47004 8.96741 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003706 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.278187 B = 7553.497503 C = 8349.447666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.071 3.929 3 C -0.159 4.159 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.272 1.272 12 C -0.586 4.586 13 S 2.613 3.387 14 O -0.982 6.982 15 O -0.991 6.991 16 N -1.104 6.104 17 C 0.194 3.806 18 H 0.099 0.901 19 C -0.179 4.179 20 C 0.062 3.938 21 O -0.325 6.325 22 C 0.128 3.872 23 C -0.161 4.161 24 C -0.078 4.078 25 C -0.159 4.159 26 C -0.085 4.085 27 C -0.182 4.182 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.423 0.577 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.077 0.923 42 H 0.144 0.856 43 H 0.157 0.843 44 H 0.143 0.857 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 -8.676 17.320 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 C -0.217 4.217 4 C -0.556 4.556 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.197 1.197 12 C -0.719 4.719 13 S 2.710 3.290 14 O -0.972 6.972 15 O -0.981 6.981 16 N -0.862 5.862 17 C 0.087 3.913 18 H 0.117 0.883 19 C -0.218 4.218 20 C -0.013 4.013 21 O -0.240 6.240 22 C 0.082 3.918 23 C -0.180 4.180 24 C -0.096 4.096 25 C -0.177 4.177 26 C -0.104 4.104 27 C -0.185 4.185 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.259 0.741 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.155 0.845 41 H 0.095 0.905 42 H 0.162 0.838 43 H 0.174 0.826 44 H 0.161 0.839 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.792 -7.649 17.342 20.894 hybrid contribution -0.082 -0.649 -1.364 1.513 sum 8.710 -8.298 15.978 20.000 Atomic orbital electron populations 1.22212 0.97828 1.00474 1.01294 1.17907 0.92255 0.92214 0.90764 1.22203 0.99873 0.98253 1.01400 1.21244 1.31691 1.12301 0.90328 0.91870 1.25653 0.95174 0.95623 1.01608 1.69935 1.37107 1.23678 1.23888 0.85699 0.78754 0.78741 0.78940 1.19758 1.21398 1.19703 1.30470 1.12496 1.13491 1.15431 1.04831 0.73520 0.74995 0.75646 1.93510 1.78321 1.39551 1.85832 1.93518 1.31396 1.87025 1.86169 1.55562 1.13644 1.71657 1.45358 1.19588 0.79743 0.92188 0.99808 0.88337 1.22793 0.97965 1.00467 1.00574 1.23212 0.95544 0.83705 0.98876 1.85966 1.71258 1.18534 1.48217 1.18945 0.92080 0.88242 0.92544 1.20885 1.03796 0.89307 1.03998 1.21324 0.94273 0.99232 0.94748 1.21363 1.00082 0.97238 0.99019 1.21148 0.98396 0.92102 0.98707 1.19906 1.01573 0.95529 1.01471 0.95035 0.91021 0.94134 0.93987 0.91127 0.94769 0.92942 0.84605 0.84383 0.74149 0.88473 0.89859 0.84543 0.90492 0.83801 0.82576 0.83872 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.85 7.77 71.98 0.56 -7.29 16 2 C 0.07 3.32 0.52 -52.93 -0.03 3.29 16 3 C -0.16 -7.71 7.77 71.98 0.56 -7.15 16 4 C -0.52 -26.28 8.01 25.60 0.21 -26.07 16 5 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 6 C 0.02 0.99 5.15 84.66 0.44 1.42 16 7 N -0.91 -49.65 9.35 21.45 0.20 -49.45 16 8 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 C -0.59 -21.25 4.85 71.98 0.35 -20.90 16 13 S 2.61 90.76 4.42 -56.49 -0.25 90.51 16 14 O -0.98 -38.38 15.14 -127.65 -1.93 -40.32 16 15 O -0.99 -40.17 15.71 -127.65 -2.01 -42.17 16 16 N -1.10 -28.12 4.61 -172.33 -0.79 -28.91 16 17 C 0.19 4.49 2.71 44.29 0.12 4.61 16 18 H 0.10 2.21 6.99 -2.39 -0.02 2.20 16 19 C -0.18 -3.74 5.79 30.75 0.18 -3.56 16 20 C 0.06 1.05 7.03 72.11 0.51 1.55 16 21 O -0.33 -6.75 10.27 -91.84 -0.94 -7.69 16 22 C 0.13 2.74 6.47 22.52 0.15 2.89 16 23 C -0.16 -2.89 9.94 22.42 0.22 -2.66 16 24 C -0.08 -1.19 10.04 22.22 0.22 -0.97 16 25 C -0.16 -2.75 10.04 22.25 0.22 -2.52 16 26 C -0.09 -1.77 9.21 22.30 0.21 -1.56 16 27 C -0.18 -4.02 5.49 -19.75 -0.11 -4.13 16 28 H 0.03 1.47 5.47 -2.39 -0.01 1.46 16 29 H 0.07 3.84 6.07 -2.38 -0.01 3.83 16 30 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 33 H 0.03 1.57 5.46 -2.39 -0.01 1.55 16 34 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.14 4.33 7.32 -2.39 -0.02 4.31 16 36 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 37 H 0.42 9.46 8.72 -96.75 -0.84 8.62 16 38 H 0.10 2.17 7.81 -2.39 -0.02 2.15 16 39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.13 2.57 7.70 -2.91 -0.02 2.55 16 Total: -1.00 -66.94 361.84 0.27 -66.67 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.17 Total: 30.87 kcal Atomic # 6 Polarization: -66.85 SS G_CDS: 3.80 Total: -63.05 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -0.59 Total: -78.36 kcal Atomic # 8 Polarization: -85.30 SS G_CDS: -4.88 Total: -90.18 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 90.76 SS G_CDS: -0.25 Total: 90.51 kcal Total: -66.94 0.27 -66.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295345676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.556 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds