Wall clock time and date at job start Tue Mar 31 2020 22:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46817 * 2 1 4 4 C 1.50702 * 109.47323 * 240.00345 * 2 1 3 5 5 H 1.08001 * 119.99578 * 240.83251 * 4 2 1 6 6 C 1.37876 * 120.00203 * 60.83422 * 4 2 1 7 7 N 1.31512 * 119.99933 * 194.58131 * 6 4 2 8 8 Si 1.86796 * 120.00015 * 14.57857 * 6 4 2 9 9 H 1.48502 * 109.47117 * 84.45562 * 8 6 4 10 10 H 1.48499 * 109.47402 * 204.45411 * 8 6 4 11 11 H 1.48507 * 109.47193 * 324.45764 * 8 6 4 12 12 C 1.52998 * 109.46984 * 119.99866 * 2 1 3 13 13 S 1.81401 * 109.47335 * 300.00202 * 12 2 1 14 14 O 1.42099 * 110.54346 * 68.37616 * 13 12 2 15 15 O 1.42106 * 110.54037 * 291.62533 * 13 12 2 16 16 N 1.65595 * 104.44858 * 180.02562 * 13 12 2 17 17 C 1.46500 * 120.00260 * 65.00183 * 16 13 12 18 18 H 1.09001 * 110.27077 * 337.07226 * 17 16 13 19 19 C 1.51365 * 110.38772 * 99.20489 * 17 16 13 20 20 C 1.38499 * 130.38802 * 281.77530 * 19 17 16 21 21 C 1.38110 * 120.21367 * 179.97438 * 20 19 17 22 22 C 1.38244 * 119.93526 * 359.66258 * 21 20 19 23 23 C 1.38112 * 119.93461 * 0.64716 * 22 21 20 24 24 C 1.38211 * 109.76075 * 101.77883 * 19 17 16 25 25 C 1.51367 * 109.75884 * 0.02562 * 24 19 17 26 26 C 1.54342 * 105.17274 * 17.18722 * 25 24 19 27 27 H 1.08996 * 110.82426 * 92.07423 * 26 25 24 28 28 O 1.42894 * 110.82132 * 215.43156 * 26 25 24 29 29 H 1.08994 * 109.47520 * 310.23280 * 1 2 3 30 30 H 1.09000 * 109.46819 * 70.23213 * 1 2 3 31 31 H 1.09003 * 109.46852 * 190.23027 * 1 2 3 32 32 H 1.09005 * 109.47098 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47092 * 299.99621 * 3 2 1 34 34 H 1.09004 * 109.47100 * 60.00259 * 3 2 1 35 35 H 0.97000 * 119.99804 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.46740 * 180.02562 * 12 2 1 37 37 H 1.08994 * 109.47175 * 60.00474 * 12 2 1 38 38 H 0.97003 * 119.99915 * 244.99613 * 16 13 12 39 39 H 1.07995 * 119.89717 * 359.97438 * 20 19 17 40 40 H 1.08001 * 120.02749 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.03847 * 180.32850 * 22 21 20 42 42 H 1.08001 * 119.89556 * 179.66073 * 23 22 21 43 43 H 1.09004 * 110.30054 * 136.11405 * 25 24 19 44 44 H 1.08999 * 110.29867 * 258.16327 * 25 24 19 45 45 H 0.96696 * 114.00215 * 298.53847 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6422 -1.5962 -1.1314 6 6 1.7136 -0.2293 -2.4827 7 7 1.8970 -0.9846 -3.5435 8 14 1.0212 1.4952 -2.6723 9 1 2.1371 2.4737 -2.7240 10 1 0.2328 1.5768 -3.9281 11 1 0.1434 1.8062 -1.5156 12 6 2.0400 -0.7212 1.2492 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0540 -0.7400 3.9936 17 6 3.5025 -0.7962 4.2054 18 1 4.0289 -0.5798 3.2758 19 6 3.9162 0.1826 5.2833 20 6 4.0894 1.5557 5.2301 21 6 4.4771 2.2516 6.3583 22 6 4.6864 1.5772 7.5468 23 6 4.5204 0.2071 7.6003 24 6 4.1329 -0.4926 6.4696 25 6 3.8802 -1.9717 6.2700 26 6 3.9128 -2.1844 4.7417 27 1 4.9159 -2.4511 4.4089 28 8 2.9675 -3.1807 4.3473 29 1 -0.3634 0.6637 0.7845 30 1 -0.3633 0.3476 -0.9671 31 1 -0.3633 -1.0114 0.1825 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6724 -0.6463 -4.4244 36 1 3.1300 -0.7208 1.2494 37 1 1.6767 -1.7488 1.2492 38 1 1.4574 -1.2146 4.5933 39 1 3.9208 2.0840 4.3034 40 1 4.6109 3.3223 6.3136 41 1 4.9844 2.1204 8.4315 42 1 4.6895 -0.3198 8.5278 43 1 4.6641 -2.5574 6.7503 44 1 2.9045 -2.2461 6.6709 45 1 3.1331 -4.0533 4.7294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295659688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:00 Heat of formation + Delta-G solvation = -100.231552 kcal Electronic energy + Delta-G solvation = -28799.662704 eV Core-core repulsion = 24908.866672 eV Total energy + Delta-G solvation = -3890.796032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.33764 -38.51362 -38.29321 -38.11315 -36.93431 -35.79077 -34.05749 -33.85491 -31.73717 -29.00133 -28.98093 -28.16746 -27.46993 -27.07367 -23.38517 -21.95809 -21.86251 -21.67960 -20.31516 -18.99041 -18.29632 -18.14596 -17.72723 -17.17799 -16.95371 -16.68483 -16.40281 -16.18906 -15.85086 -15.12440 -15.00624 -14.81022 -14.78233 -14.34697 -14.31787 -14.20782 -14.13481 -14.09338 -13.54555 -13.30085 -13.17563 -13.03255 -12.83317 -12.73859 -12.66872 -12.60239 -12.32273 -12.02100 -11.95305 -11.86866 -11.74014 -11.64024 -10.98245 -10.96872 -10.69294 -10.57564 -10.35740 -9.73875 -9.52605 -8.35440 -6.34778 -0.67032 0.38181 0.49665 1.29335 1.34335 1.42270 1.84249 2.28916 2.77269 2.86039 2.98643 3.03500 3.29614 3.43609 3.64008 3.74364 3.87426 4.05823 4.09985 4.22696 4.23479 4.28014 4.31415 4.45829 4.49957 4.58350 4.64120 4.67686 4.73152 4.75034 4.85112 4.89839 4.93473 5.05740 5.13170 5.15425 5.26465 5.36644 5.51280 5.55127 5.62067 5.65083 5.69295 6.08194 6.13682 6.26223 6.67769 6.98683 7.29333 8.80521 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018621 B = 0.003735 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.283923 B = 7494.764066 C = 8076.246833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.045 3.955 3 C -0.185 4.185 4 C -0.503 4.503 5 H 0.049 0.951 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.917 3.083 9 H -0.274 1.274 10 H -0.305 1.305 11 H -0.223 1.223 12 C -0.580 4.580 13 S 2.615 3.385 14 O -0.990 6.990 15 O -0.976 6.976 16 N -1.087 6.087 17 C 0.184 3.816 18 H 0.095 0.905 19 C -0.136 4.136 20 C -0.106 4.106 21 C -0.138 4.138 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.089 4.089 25 C -0.108 4.108 26 C 0.105 3.895 27 H 0.102 0.898 28 O -0.564 6.564 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.266 0.734 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.423 0.577 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.345 -1.289 25.469 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.043 3.957 3 C -0.242 4.242 4 C -0.542 4.542 5 H 0.067 0.933 6 C -0.172 4.172 7 N -0.574 5.574 8 Si 0.747 3.253 9 H -0.201 1.201 10 H -0.233 1.233 11 H -0.148 1.148 12 C -0.711 4.711 13 S 2.711 3.289 14 O -0.981 6.981 15 O -0.966 6.966 16 N -0.845 5.845 17 C 0.077 3.923 18 H 0.113 0.887 19 C -0.138 4.138 20 C -0.125 4.125 21 C -0.156 4.156 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.090 4.090 25 C -0.145 4.145 26 C 0.044 3.956 27 H 0.120 0.880 28 O -0.373 6.373 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.259 0.741 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.168 0.832 42 H 0.165 0.835 43 H 0.127 0.873 44 H 0.114 0.886 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 6.637 0.027 24.931 25.799 hybrid contribution 0.062 -0.293 -0.785 0.840 sum 6.700 -0.267 24.146 25.060 Atomic orbital electron populations 1.22688 0.96972 1.01986 1.01552 1.18209 0.92640 0.92242 0.92626 1.22833 1.02965 0.97315 1.01083 1.20915 1.32458 1.11575 0.89240 0.93298 1.25665 0.95367 1.00527 0.95663 1.70053 1.50312 1.37594 0.99459 0.86705 0.79867 0.81799 0.76976 1.20081 1.23330 1.14778 1.30362 1.12660 1.13402 1.14715 1.04718 0.73562 0.74987 0.75640 1.93522 1.31294 1.87083 1.86173 1.93510 1.78193 1.39219 1.85666 1.55103 1.13783 1.70113 1.45528 1.20345 0.80130 0.93929 0.97924 0.88664 1.20789 1.02045 0.94200 0.96763 1.21041 0.98042 0.93649 0.99768 1.21342 1.00548 1.00843 0.92849 1.21442 0.98781 0.94529 0.98214 1.20942 1.00301 0.94251 0.98132 1.20716 0.98343 0.96633 0.93333 1.21841 1.04478 0.91638 0.96504 1.22631 0.93272 0.86628 0.93042 0.88002 1.86508 1.53507 1.22938 1.74316 0.93260 0.92382 0.91931 0.91042 0.93808 0.91651 0.92455 0.84553 0.84657 0.74072 0.86528 0.84576 0.83207 0.83525 0.87266 0.88567 0.74719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.91 6.95 71.98 0.50 -7.41 16 2 C 0.05 2.08 0.52 -52.93 -0.03 2.05 16 3 C -0.19 -8.12 7.22 71.98 0.52 -7.60 16 4 C -0.50 -27.68 8.62 25.60 0.22 -27.46 16 5 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 6 C 0.03 1.52 5.31 84.65 0.45 1.97 16 7 N -0.94 -57.42 13.96 21.45 0.30 -57.12 16 8 Si 0.92 44.58 22.79 68.60 1.56 46.14 16 9 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 10 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 11 H -0.22 -9.98 4.67 99.48 0.46 -9.51 16 12 C -0.58 -21.48 4.90 71.98 0.35 -21.13 16 13 S 2.61 89.98 4.42 -56.49 -0.25 89.73 16 14 O -0.99 -39.31 15.93 -127.65 -2.03 -41.34 16 15 O -0.98 -36.42 14.21 -127.65 -1.81 -38.23 16 16 N -1.09 -28.62 4.88 -169.68 -0.83 -29.45 16 17 C 0.18 4.21 3.23 44.92 0.15 4.36 16 18 H 0.10 2.18 7.25 -2.39 -0.02 2.16 16 19 C -0.14 -3.20 5.77 -19.60 -0.11 -3.31 16 20 C -0.11 -2.74 9.85 22.30 0.22 -2.53 16 21 C -0.14 -2.86 10.05 22.24 0.22 -2.63 16 22 C -0.11 -1.82 10.05 22.24 0.22 -1.60 16 23 C -0.12 -1.84 10.04 22.30 0.22 -1.62 16 24 C -0.09 -1.61 6.14 -19.60 -0.12 -1.73 16 25 C -0.11 -1.30 6.51 30.52 0.20 -1.11 16 26 C 0.11 1.60 4.34 31.51 0.14 1.73 16 27 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 28 O -0.56 -8.67 12.42 -148.98 -1.85 -10.52 16 29 H 0.05 2.08 6.21 -2.39 -0.01 2.07 16 30 H 0.06 2.69 4.32 -2.39 -0.01 2.68 16 31 H 0.06 2.72 8.11 -2.39 -0.02 2.70 16 32 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 33 H 0.04 1.97 2.28 -2.39 -0.01 1.97 16 34 H 0.06 2.66 5.46 -2.39 -0.01 2.64 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.14 4.53 7.50 -2.39 -0.02 4.52 16 37 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 38 H 0.42 10.05 8.46 -96.75 -0.82 9.23 16 39 H 0.12 3.43 7.02 -2.91 -0.02 3.41 16 40 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.10 1.11 8.10 -2.39 -0.02 1.09 16 45 H 0.40 2.31 9.11 -74.06 -0.67 1.63 16 Total: -1.00 -75.76 353.83 -2.46 -78.22 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.70 Total: 30.58 kcal Atomic # 6 Polarization: -71.16 SS G_CDS: 3.15 Total: -68.01 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -0.53 Total: -86.57 kcal Atomic # 8 Polarization: -84.40 SS G_CDS: -5.70 Total: -90.10 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.56 Total: 46.14 kcal Atomic # 16 Polarization: 89.98 SS G_CDS: -0.25 Total: 89.73 kcal Total: -75.76 -2.46 -78.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295659688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.012 kcal (2) G-P(sol) polarization free energy of solvation -75.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds