Wall clock time and date at job start Tue Mar 31 2020 22:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47440 * 2 1 4 4 C 1.50697 * 109.47437 * 120.00019 * 2 1 3 5 5 H 1.08003 * 120.00564 * 120.82920 * 4 2 1 6 6 C 1.37878 * 120.00169 * 300.83480 * 4 2 1 7 7 N 1.31512 * 120.00309 * 194.57435 * 6 4 2 8 8 Si 1.86803 * 119.99653 * 14.57701 * 6 4 2 9 9 H 1.48502 * 109.47296 * 84.45646 * 8 6 4 10 10 H 1.48503 * 109.47054 * 204.45426 * 8 6 4 11 11 H 1.48494 * 109.47103 * 324.45496 * 8 6 4 12 12 C 1.53002 * 109.47215 * 239.99913 * 2 1 3 13 13 S 1.81404 * 109.46825 * 59.99977 * 12 2 1 14 14 O 1.42105 * 110.54377 * 291.62384 * 13 12 2 15 15 O 1.42091 * 110.54176 * 68.37883 * 13 12 2 16 16 N 1.65601 * 104.44705 * 180.02562 * 13 12 2 17 17 C 1.46505 * 119.99910 * 65.00169 * 16 13 12 18 18 H 1.08991 * 110.26816 * 337.06975 * 17 16 13 19 19 C 1.54345 * 110.30003 * 214.99780 * 17 16 13 20 20 C 1.54353 * 102.38376 * 214.73762 * 19 17 16 21 21 C 1.51359 * 105.16273 * 26.33848 * 20 19 17 22 22 C 1.38165 * 109.78168 * 342.81450 * 21 20 19 23 23 C 1.38499 * 119.88254 * 179.97438 * 22 21 20 24 24 C 1.38175 * 120.33196 * 0.02562 * 23 22 21 25 25 C 1.38122 * 119.99773 * 359.97438 * 24 23 22 26 26 C 1.38646 * 119.87028 * 359.97438 * 25 24 23 27 27 O 1.35901 * 119.94888 * 180.02562 * 26 25 24 28 28 H 1.09000 * 109.46488 * 300.00005 * 1 2 3 29 29 H 1.08998 * 109.47107 * 59.99666 * 1 2 3 30 30 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47225 * 190.23330 * 3 2 1 32 32 H 1.08998 * 109.46631 * 310.23253 * 3 2 1 33 33 H 1.08999 * 109.47253 * 70.23442 * 3 2 1 34 34 H 0.97003 * 119.99788 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47258 * 180.02562 * 12 2 1 36 36 H 1.08999 * 109.47125 * 300.00103 * 12 2 1 37 37 H 0.97001 * 120.00069 * 245.00238 * 16 13 12 38 38 H 1.09000 * 110.82510 * 332.96248 * 19 17 16 39 39 H 1.09001 * 110.82500 * 96.51153 * 19 17 16 40 40 H 1.08999 * 110.29941 * 145.26230 * 20 19 17 41 41 H 1.09004 * 110.30103 * 267.31221 * 20 19 17 42 42 H 1.07996 * 119.83466 * 180.02562 * 23 22 21 43 43 H 1.07995 * 120.00363 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.06467 * 180.02562 * 25 24 23 45 45 H 0.96703 * 114.00201 * 269.97416 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6643 -1.5806 1.1314 6 6 1.6852 -0.2495 2.4826 7 7 2.3362 -0.6742 3.5435 8 14 0.2901 0.9781 2.6723 9 1 -1.0044 0.2523 2.7241 10 1 0.4761 1.7487 3.9281 11 1 0.2895 1.9093 1.5156 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1339 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0479 1.4099 -2.8544 16 7 2.0529 -0.7408 -3.9936 17 6 1.6231 -2.1253 -4.2054 18 1 1.2437 -2.5492 -3.2757 19 6 2.7954 -2.9738 -4.7418 20 6 2.0831 -3.9582 -5.6937 21 6 0.8276 -3.2398 -6.1391 22 6 0.5631 -2.1869 -5.2844 23 6 -0.5446 -1.3842 -5.5005 24 6 -1.3879 -1.6310 -6.5669 25 6 -1.1277 -2.6823 -7.4241 26 6 -0.0193 -3.4879 -7.2123 27 8 0.2385 -4.5224 -8.0550 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1147 1.4479 -0.1826 32 1 1.5354 2.0062 -0.7846 33 1 1.8336 1.9009 0.9671 34 1 2.0921 -0.3496 4.4244 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -1.7489 -1.2492 37 1 2.6993 -0.3365 -4.5933 38 1 3.5057 -2.3526 -5.2874 39 1 3.2899 -3.5084 -3.9307 40 1 2.7171 -4.1796 -6.5524 41 1 1.8280 -4.8771 -5.1658 42 1 -0.7503 -0.5612 -4.8321 43 1 -2.2499 -1.0014 -6.7307 44 1 -1.7858 -2.8759 -8.2582 45 1 -0.1725 -5.3569 -7.7907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295737248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:36 Heat of formation + Delta-G solvation = -73.092142 kcal Electronic energy + Delta-G solvation = -28428.320492 eV Core-core repulsion = 24538.701313 eV Total energy + Delta-G solvation = -3889.619179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.62762 -37.86534 -36.77043 -36.70277 -35.88533 -35.53146 -33.44989 -31.97905 -29.88242 -28.97670 -27.48023 -26.42049 -26.39345 -25.04128 -22.84115 -21.32146 -21.16223 -20.03163 -18.88479 -18.42726 -17.51354 -16.66121 -16.19454 -16.00312 -15.76109 -15.60731 -15.39139 -15.10569 -14.97731 -14.32314 -13.94694 -13.54519 -13.26227 -13.20807 -12.97451 -12.68744 -12.63466 -12.47318 -12.25740 -12.09881 -12.08052 -11.65269 -11.60914 -11.43661 -11.32874 -11.16075 -11.05014 -10.99239 -10.82049 -10.76033 -10.20172 -10.09454 -10.06310 -9.56086 -9.05420 -8.82450 -8.76202 -8.65300 -8.50250 -6.22310 -4.19885 0.62472 1.13763 1.14443 2.98472 3.23098 3.32261 3.36846 3.47016 4.01732 4.07484 4.13741 4.31463 4.37140 4.54202 4.67903 4.83394 4.87996 5.01717 5.07916 5.08406 5.30752 5.35851 5.40767 5.48280 5.59193 5.63176 5.67951 5.81064 5.86781 5.94454 5.98842 6.17266 6.22702 6.28593 6.38729 6.40527 6.45828 6.48581 6.66875 6.69723 6.83708 6.98625 7.10099 7.28078 7.45094 7.59402 8.35423 8.80184 9.41648 10.90169 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.003278 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.030971 B = 8540.155662 C = 8802.298174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.055 3.945 3 C -0.171 4.171 4 C -0.509 4.509 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.874 3.126 9 H -0.281 1.281 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.574 4.574 13 S 2.586 3.414 14 O -0.960 6.960 15 O -0.962 6.962 16 N -1.118 6.118 17 C 0.192 3.808 18 H 0.104 0.896 19 C -0.125 4.125 20 C -0.076 4.076 21 C -0.117 4.117 22 C -0.096 4.096 23 C -0.096 4.096 24 C -0.110 4.110 25 C -0.141 4.141 26 C 0.105 3.895 27 O -0.499 6.499 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.266 0.734 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.415 0.585 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.145 0.855 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -6.787 -20.219 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.052 3.948 3 C -0.228 4.228 4 C -0.548 4.548 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.705 3.295 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.708 4.708 13 S 2.684 3.316 14 O -0.950 6.950 15 O -0.953 6.953 16 N -0.873 5.873 17 C 0.084 3.916 18 H 0.122 0.878 19 C -0.164 4.164 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.098 4.098 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.160 4.160 26 C 0.061 3.939 27 O -0.309 6.309 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.248 0.752 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.162 0.838 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.054 -5.656 -20.313 21.306 hybrid contribution -0.501 -0.192 0.523 0.749 sum -3.555 -5.848 -19.790 20.940 Atomic orbital electron populations 1.22816 0.97844 1.02311 1.00838 1.18225 0.91718 0.92517 0.92324 1.22683 1.01358 0.97012 1.01770 1.20646 1.32147 1.14444 0.87522 0.90389 1.24965 0.96019 0.95808 0.95797 1.69933 1.38887 1.44719 0.98922 0.87442 0.83037 0.82444 0.76543 1.20796 1.22902 1.17191 1.30384 1.12075 1.12782 1.15518 1.05781 0.75179 0.74827 0.75819 1.93518 1.29802 1.86388 1.85310 1.93575 1.77987 1.37963 1.85745 1.55898 1.60724 1.23557 1.47155 1.20257 0.92175 0.81818 0.97357 0.87780 1.22688 0.96822 0.97375 0.99539 1.20948 0.93159 0.97985 0.99259 1.20812 0.98124 0.98459 0.94431 1.20777 0.96363 0.95737 0.96904 1.21180 0.92956 0.99846 0.97425 1.21003 0.99686 0.97480 0.94689 1.21329 0.96916 0.97215 1.00528 1.17986 0.94211 0.91616 0.90066 1.84813 1.76132 1.20060 1.49904 0.93036 0.93094 0.91803 0.92336 0.94463 0.91424 0.92389 0.85341 0.85840 0.75165 0.89806 0.89162 0.90123 0.89833 0.83767 0.85350 0.85430 0.75870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 7.22 37.16 0.27 -3.68 16 2 C 0.06 1.22 0.52 -155.66 -0.08 1.14 16 3 C -0.17 -3.78 6.95 37.16 0.26 -3.53 16 4 C -0.51 -13.41 8.62 -34.44 -0.30 -13.70 16 5 H 0.08 2.18 7.99 -52.48 -0.42 1.76 16 6 C 0.08 2.14 5.31 -17.82 -0.09 2.05 16 7 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 8 Si 0.87 21.26 22.79 -169.99 -3.87 17.39 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.25 -5.61 4.67 56.52 0.26 -5.34 16 12 C -0.57 -10.01 4.90 37.16 0.18 -9.82 16 13 S 2.59 42.09 4.42 -107.50 -0.48 41.62 16 14 O -0.96 -17.17 13.21 -57.54 -0.76 -17.93 16 15 O -0.96 -18.22 15.93 -57.54 -0.92 -19.13 16 16 N -1.12 -13.58 5.39 -4.99 -0.03 -13.61 16 17 C 0.19 2.14 3.30 -68.04 -0.22 1.91 16 18 H 0.10 1.11 7.25 -51.93 -0.38 0.73 16 19 C -0.13 -1.06 6.77 -25.32 -0.17 -1.23 16 20 C -0.08 -0.64 6.71 -26.85 -0.18 -0.82 16 21 C -0.12 -1.28 6.11 -104.06 -0.64 -1.92 16 22 C -0.10 -1.18 5.79 -104.22 -0.60 -1.78 16 23 C -0.10 -1.26 9.88 -39.51 -0.39 -1.65 16 24 C -0.11 -1.23 10.04 -39.65 -0.40 -1.63 16 25 C -0.14 -1.46 9.98 -39.47 -0.39 -1.86 16 26 C 0.11 1.13 6.70 -39.17 -0.26 0.86 16 27 O -0.50 -4.52 13.45 -19.43 -0.26 -4.78 16 28 H 0.05 1.17 2.28 -51.93 -0.12 1.05 16 29 H 0.05 1.03 5.46 -51.93 -0.28 0.74 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 32 H 0.04 0.77 6.21 -51.93 -0.32 0.45 16 33 H 0.07 1.55 4.32 -51.93 -0.22 1.32 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 36 H 0.12 1.90 7.50 -51.92 -0.39 1.51 16 37 H 0.41 4.28 8.65 -34.47 -0.30 3.98 16 38 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.14 2.11 5.85 -52.49 -0.31 1.80 16 43 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.39 1.70 9.06 45.56 0.41 2.11 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -34.12 352.52 -8.64 -42.76 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.39 Total: 9.37 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: -3.02 Total: -35.66 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.75 Total: -38.96 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.94 Total: -41.84 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -3.87 Total: 17.39 kcal Atomic # 16 Polarization: 42.09 SS G_CDS: -0.48 Total: 41.62 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.12 -8.64 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295737248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.331 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds