Wall clock time and date at job start Tue Mar 31 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47172 * 2 1 4 4 C 1.50695 * 109.47222 * 239.99513 * 2 1 3 5 5 H 1.08005 * 120.00621 * 240.00309 * 4 2 1 6 6 C 1.37879 * 119.99861 * 60.00352 * 4 2 1 7 7 N 1.31513 * 119.99925 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00113 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47163 * 90.00289 * 8 6 4 10 10 H 1.48504 * 109.47032 * 210.00289 * 8 6 4 11 11 H 1.48500 * 109.47245 * 330.00103 * 8 6 4 12 12 C 1.53010 * 109.46637 * 119.99995 * 2 1 3 13 13 S 1.81389 * 109.47060 * 299.99812 * 12 2 1 14 14 O 1.42106 * 110.54745 * 291.44891 * 13 12 2 15 15 O 1.42098 * 110.54518 * 68.20225 * 13 12 2 16 16 N 1.65605 * 104.45029 * 179.82701 * 13 12 2 17 17 C 1.46497 * 119.99833 * 65.06406 * 16 13 12 18 18 H 1.09002 * 110.26957 * 352.53502 * 17 16 13 19 19 C 1.54342 * 110.30353 * 114.61500 * 17 16 13 20 20 C 1.54344 * 102.38721 * 92.57673 * 19 17 16 21 21 C 1.51358 * 105.16425 * 26.33835 * 20 19 17 22 22 C 1.38168 * 109.78140 * 342.82007 * 21 20 19 23 23 C 1.38498 * 119.88876 * 179.97438 * 22 21 20 24 24 C 1.38172 * 120.32902 * 0.03007 * 23 22 21 25 25 C 1.38123 * 119.99980 * 359.97438 * 24 23 22 26 26 C 1.38649 * 119.87028 * 0.02562 * 25 24 23 27 27 O 1.35899 * 119.95021 * 180.02562 * 26 25 24 28 28 H 1.09005 * 109.46659 * 60.00232 * 1 2 3 29 29 H 1.09000 * 109.47562 * 300.00175 * 1 2 3 30 30 H 1.08999 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47328 * 60.00197 * 3 2 1 32 32 H 1.09004 * 109.46994 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47248 * 299.99496 * 3 2 1 34 34 H 0.97003 * 119.99785 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46844 * 59.99993 * 12 2 1 36 36 H 1.09000 * 109.46772 * 180.02562 * 12 2 1 37 37 H 0.97003 * 119.99610 * 245.06852 * 16 13 12 38 38 H 1.09000 * 110.82335 * 210.80387 * 19 17 16 39 39 H 1.09002 * 110.82388 * 334.35163 * 19 17 16 40 40 H 1.08994 * 110.30794 * 145.26332 * 20 19 17 41 41 H 1.09007 * 110.30421 * 267.31730 * 20 19 17 42 42 H 1.07998 * 119.83621 * 180.02562 * 23 22 21 43 43 H 1.08004 * 120.00370 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.06435 * 180.02562 * 25 24 23 45 45 H 0.96700 * 114.00071 * 269.94185 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4875 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 6 2.0399 -0.7213 1.2494 13 16 1.4353 0.1338 2.7303 14 8 2.0509 1.4083 2.8567 15 8 0.0273 -0.0149 2.8522 16 7 2.0494 -0.7433 3.9937 17 6 3.4973 -0.8028 4.2086 18 1 4.0220 -0.3292 3.3789 19 6 3.8697 -0.1161 5.5398 20 6 3.8539 -1.2948 6.5361 21 6 4.1511 -2.5223 5.7020 22 6 3.9464 -2.2400 4.3650 23 6 4.1592 -3.2220 3.4118 24 6 4.5748 -4.4840 3.7909 25 6 4.7807 -4.7712 5.1262 26 6 4.5690 -3.7912 6.0839 27 8 4.7715 -4.0719 7.3981 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 0.7091 1.1613 -3.4844 35 1 1.6765 -1.7489 1.2493 36 1 3.1299 -0.7209 1.2496 37 1 1.4503 -1.2176 4.5912 38 1 4.8631 0.3288 5.4816 39 1 3.1246 0.6314 5.8120 40 1 4.6235 -1.1583 7.2958 41 1 2.8731 -1.3817 7.0037 42 1 3.9993 -3.0002 2.3670 43 1 4.7388 -5.2459 3.0432 44 1 5.1060 -5.7571 5.4237 45 1 3.9877 -4.4078 7.8539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295737250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:40 Heat of formation + Delta-G solvation = -92.970550 kcal Electronic energy + Delta-G solvation = -28388.463987 eV Core-core repulsion = 24497.982815 eV Total energy + Delta-G solvation = -3890.481171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.68141 -37.88139 -36.56056 -36.30323 -35.93859 -35.31676 -33.09363 -31.69089 -30.04894 -28.98900 -26.69611 -26.50283 -25.73613 -25.24357 -22.84323 -21.34450 -21.05073 -19.70554 -18.83367 -18.44074 -17.37018 -16.51098 -16.12169 -15.94568 -15.66712 -15.42684 -15.27988 -14.90658 -14.75498 -14.17952 -13.99835 -13.52843 -13.12043 -13.03959 -12.74806 -12.53035 -12.37219 -12.18596 -12.11291 -11.98259 -11.51852 -11.47705 -11.31697 -11.28223 -11.08994 -11.03227 -10.94345 -10.77534 -10.68937 -10.39732 -10.30014 -10.13358 -9.74883 -9.67401 -9.32163 -8.91002 -8.73327 -8.69884 -8.42080 -6.05393 -4.17463 0.76572 1.05511 1.10226 3.10055 3.24218 3.31785 3.33313 3.49022 3.98566 4.10510 4.24483 4.33915 4.39641 4.72706 4.78027 4.82799 4.94862 5.03416 5.13464 5.20386 5.30186 5.32408 5.53826 5.61910 5.64981 5.73114 5.77972 5.80333 5.90355 6.08597 6.18698 6.24140 6.34599 6.38113 6.59242 6.67818 6.77448 6.88376 6.99557 7.09376 7.29508 7.40519 7.48315 7.65798 7.96156 8.07375 8.30771 8.80895 9.48091 10.95928 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.003646 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.084254 B = 7676.855843 C = 8971.563118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.582 4.582 13 S 2.590 3.410 14 O -0.961 6.961 15 O -0.964 6.964 16 N -1.117 6.117 17 C 0.192 3.808 18 H 0.102 0.898 19 C -0.130 4.130 20 C -0.078 4.078 21 C -0.109 4.109 22 C -0.095 4.095 23 C -0.099 4.099 24 C -0.106 4.106 25 C -0.139 4.139 26 C 0.108 3.892 27 O -0.499 6.499 28 H 0.095 0.905 29 H 0.027 0.973 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.262 0.738 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.412 0.588 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -8.441 17.003 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.716 4.716 13 S 2.689 3.311 14 O -0.951 6.951 15 O -0.954 6.954 16 N -0.871 5.871 17 C 0.085 3.915 18 H 0.120 0.880 19 C -0.169 4.169 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.097 4.097 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.158 4.158 26 C 0.064 3.936 27 O -0.309 6.309 28 H 0.114 0.886 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.244 0.756 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.275 -7.212 16.748 19.284 hybrid contribution 0.027 -1.636 -0.816 1.829 sum 6.302 -8.848 15.932 19.283 Atomic orbital electron populations 1.22278 0.96930 1.00622 1.02325 1.17924 0.92809 0.92195 0.89016 1.22273 0.99697 0.97801 1.02360 1.20927 1.31750 1.12061 0.89371 0.92316 1.24936 0.94901 0.94953 0.98928 1.69801 1.36319 1.22520 1.23487 0.86544 0.79174 0.79385 0.82577 1.20662 1.21129 1.19953 1.30556 1.11117 1.12956 1.16968 1.05751 0.74443 0.75335 0.75617 1.93555 1.77997 1.38093 1.85462 1.93556 1.29429 1.86689 1.85724 1.55974 1.12922 1.70622 1.47616 1.20045 0.80724 0.91071 0.99704 0.87981 1.22725 1.03232 0.97335 0.93627 1.20997 1.02182 0.90726 0.97585 1.20910 0.99538 0.94994 0.95612 1.20704 0.99531 0.96157 0.93293 1.20867 0.98585 0.92391 0.99903 1.20974 0.99256 0.96675 0.95542 1.21344 1.02135 0.99147 0.93136 1.18037 1.00353 0.91482 0.83748 1.84815 1.39316 1.86963 1.19767 0.88634 0.95396 0.94494 0.95359 0.94471 0.88636 0.92733 0.86213 0.86563 0.75558 0.89629 0.89138 0.90199 0.90202 0.85149 0.85131 0.85301 0.75776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 2 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 3 C -0.16 -3.95 7.78 37.15 0.29 -3.66 16 4 C -0.50 -12.88 8.01 -34.44 -0.28 -13.16 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -23.84 9.35 55.43 0.52 -23.32 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 C -0.58 -10.94 5.01 37.16 0.19 -10.75 16 13 S 2.59 46.40 4.36 -107.50 -0.47 45.93 16 14 O -0.96 -19.44 15.40 -57.54 -0.89 -20.33 16 15 O -0.96 -19.84 15.68 -57.54 -0.90 -20.74 16 16 N -1.12 -14.78 5.32 -4.99 -0.03 -14.81 16 17 C 0.19 2.32 3.35 -68.04 -0.23 2.09 16 18 H 0.10 1.23 7.64 -51.93 -0.40 0.84 16 19 C -0.13 -1.34 6.78 -25.32 -0.17 -1.52 16 20 C -0.08 -0.72 6.71 -26.86 -0.18 -0.90 16 21 C -0.11 -1.17 6.11 -104.06 -0.64 -1.81 16 22 C -0.09 -1.09 5.77 -104.22 -0.60 -1.69 16 23 C -0.10 -1.11 10.04 -39.51 -0.40 -1.51 16 24 C -0.11 -1.05 10.04 -39.65 -0.40 -1.45 16 25 C -0.14 -1.33 9.98 -39.47 -0.39 -1.73 16 26 C 0.11 1.11 6.70 -39.17 -0.26 0.84 16 27 O -0.50 -4.42 13.45 -19.42 -0.26 -4.68 16 28 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 29 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.65 5.47 -51.93 -0.28 0.36 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.12 2.05 8.14 -51.93 -0.42 1.62 16 36 H 0.12 1.94 7.92 -51.92 -0.41 1.53 16 37 H 0.41 4.73 8.92 -34.47 -0.31 4.42 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.39 1.66 9.06 45.56 0.41 2.08 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -32.71 367.92 -10.12 -42.83 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.67 Total: 9.68 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: -2.95 Total: -35.45 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.49 Total: -38.13 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.05 Total: -45.74 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 46.40 SS G_CDS: -0.47 Total: 45.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.71 -10.12 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295737250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.139 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds