Wall clock time and date at job start Tue Mar 31 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47172 * 2 1 4 4 C 1.50695 * 109.47222 * 239.99513 * 2 1 3 5 5 H 1.08005 * 120.00621 * 240.00309 * 4 2 1 6 6 C 1.37879 * 119.99861 * 60.00352 * 4 2 1 7 7 N 1.31513 * 119.99925 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00113 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47163 * 90.00289 * 8 6 4 10 10 H 1.48504 * 109.47032 * 210.00289 * 8 6 4 11 11 H 1.48500 * 109.47245 * 330.00103 * 8 6 4 12 12 C 1.53010 * 109.46637 * 119.99995 * 2 1 3 13 13 S 1.81389 * 109.47060 * 299.99812 * 12 2 1 14 14 O 1.42106 * 110.54745 * 291.44891 * 13 12 2 15 15 O 1.42098 * 110.54518 * 68.20225 * 13 12 2 16 16 N 1.65605 * 104.45029 * 179.82701 * 13 12 2 17 17 C 1.46497 * 119.99833 * 65.06406 * 16 13 12 18 18 H 1.09002 * 110.26957 * 352.53502 * 17 16 13 19 19 C 1.54342 * 110.30353 * 114.61500 * 17 16 13 20 20 C 1.54344 * 102.38721 * 92.57673 * 19 17 16 21 21 C 1.51358 * 105.16425 * 26.33835 * 20 19 17 22 22 C 1.38168 * 109.78140 * 342.82007 * 21 20 19 23 23 C 1.38498 * 119.88876 * 179.97438 * 22 21 20 24 24 C 1.38172 * 120.32902 * 0.03007 * 23 22 21 25 25 C 1.38123 * 119.99980 * 359.97438 * 24 23 22 26 26 C 1.38649 * 119.87028 * 0.02562 * 25 24 23 27 27 O 1.35899 * 119.95021 * 180.02562 * 26 25 24 28 28 H 1.09005 * 109.46659 * 60.00232 * 1 2 3 29 29 H 1.09000 * 109.47562 * 300.00175 * 1 2 3 30 30 H 1.08999 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47328 * 60.00197 * 3 2 1 32 32 H 1.09004 * 109.46994 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47248 * 299.99496 * 3 2 1 34 34 H 0.97003 * 119.99785 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46844 * 59.99993 * 12 2 1 36 36 H 1.09000 * 109.46772 * 180.02562 * 12 2 1 37 37 H 0.97003 * 119.99610 * 245.06852 * 16 13 12 38 38 H 1.09000 * 110.82335 * 210.80387 * 19 17 16 39 39 H 1.09002 * 110.82388 * 334.35163 * 19 17 16 40 40 H 1.08994 * 110.30794 * 145.26332 * 20 19 17 41 41 H 1.09007 * 110.30421 * 267.31730 * 20 19 17 42 42 H 1.07998 * 119.83621 * 180.02562 * 23 22 21 43 43 H 1.08004 * 120.00370 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.06435 * 180.02562 * 25 24 23 45 45 H 0.96700 * 114.00071 * 269.94185 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4875 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 6 2.0399 -0.7213 1.2494 13 16 1.4353 0.1338 2.7303 14 8 2.0509 1.4083 2.8567 15 8 0.0273 -0.0149 2.8522 16 7 2.0494 -0.7433 3.9937 17 6 3.4973 -0.8028 4.2086 18 1 4.0220 -0.3292 3.3789 19 6 3.8697 -0.1161 5.5398 20 6 3.8539 -1.2948 6.5361 21 6 4.1511 -2.5223 5.7020 22 6 3.9464 -2.2400 4.3650 23 6 4.1592 -3.2220 3.4118 24 6 4.5748 -4.4840 3.7909 25 6 4.7807 -4.7712 5.1262 26 6 4.5690 -3.7912 6.0839 27 8 4.7715 -4.0719 7.3981 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 0.7091 1.1613 -3.4844 35 1 1.6765 -1.7489 1.2493 36 1 3.1299 -0.7209 1.2496 37 1 1.4503 -1.2176 4.5912 38 1 4.8631 0.3288 5.4816 39 1 3.1246 0.6314 5.8120 40 1 4.6235 -1.1583 7.2958 41 1 2.8731 -1.3817 7.0037 42 1 3.9993 -3.0002 2.3670 43 1 4.7388 -5.2459 3.0432 44 1 5.1060 -5.7571 5.4237 45 1 3.9877 -4.4078 7.8539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295737250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:39 Heat of formation + Delta-G solvation = -115.688558 kcal Electronic energy + Delta-G solvation = -28389.449113 eV Core-core repulsion = 24497.982815 eV Total energy + Delta-G solvation = -3891.466298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.45299 -38.65952 -38.12324 -38.06555 -36.92218 -36.68675 -34.06298 -33.62354 -30.82861 -29.76659 -28.32479 -27.68363 -27.39791 -27.20427 -23.60317 -22.12659 -21.87683 -21.40375 -20.29998 -19.26624 -18.74983 -17.86691 -17.41538 -17.00068 -16.86018 -16.60912 -16.51899 -16.19166 -16.00614 -15.15053 -15.03802 -14.72087 -14.66416 -14.41399 -14.26587 -13.83794 -13.57240 -13.51697 -13.06369 -13.04769 -13.00225 -12.88502 -12.80267 -12.75276 -12.51288 -12.28442 -12.18737 -12.16476 -12.09418 -11.98576 -11.92136 -11.56036 -11.49881 -11.35961 -10.71951 -10.41125 -10.37818 -9.69262 -9.47162 -8.02044 -6.20334 -0.63680 0.26125 0.33119 1.44573 1.46750 1.54899 1.88431 2.44893 2.67710 2.84465 3.20438 3.28684 3.31682 3.35825 3.56265 3.93475 4.00003 4.07094 4.15109 4.19572 4.26446 4.32884 4.57518 4.58531 4.61457 4.78353 4.86521 4.87361 4.90096 4.98779 5.00072 5.06700 5.09451 5.16176 5.25549 5.39411 5.43947 5.49354 5.51785 5.59177 5.65905 5.89061 5.98437 6.07381 6.12728 6.35169 6.84476 6.88126 7.47985 8.97836 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.003646 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.084254 B = 7676.855843 C = 8971.563118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.071 3.929 3 C -0.160 4.160 4 C -0.515 4.515 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.266 1.266 12 C -0.586 4.586 13 S 2.612 3.388 14 O -0.985 6.985 15 O -0.992 6.992 16 N -1.099 6.099 17 C 0.183 3.817 18 H 0.099 0.901 19 C -0.131 4.131 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.106 4.106 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.141 4.141 26 C 0.105 3.895 27 O -0.506 6.506 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.261 0.739 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.422 0.578 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 -10.261 18.393 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 C -0.217 4.217 4 C -0.554 4.554 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.190 1.190 12 C -0.718 4.718 13 S 2.709 3.291 14 O -0.975 6.975 15 O -0.982 6.982 16 N -0.857 5.857 17 C 0.076 3.924 18 H 0.117 0.883 19 C -0.170 4.170 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.109 4.109 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.159 4.159 26 C 0.061 3.939 27 O -0.319 6.319 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.258 0.742 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.147 0.853 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 7.486 -9.047 18.149 21.617 hybrid contribution -0.320 -1.118 -1.150 1.636 sum 7.166 -10.166 16.999 21.064 Atomic orbital electron populations 1.22213 0.97883 1.00425 1.01293 1.17907 0.92215 0.92154 0.90864 1.22201 0.99875 0.98338 1.01329 1.21288 1.31556 1.12236 0.90292 0.91735 1.25666 0.95232 0.95624 1.01647 1.69946 1.37294 1.23684 1.23785 0.85636 0.78913 0.78231 0.79315 1.20472 1.21415 1.19048 1.30481 1.12479 1.13404 1.15476 1.04828 0.73490 0.74989 0.75758 1.93520 1.78280 1.39829 1.85887 1.93509 1.31421 1.87096 1.86215 1.55486 1.13969 1.70204 1.46075 1.20279 0.79400 0.92122 1.00627 0.88330 1.22758 1.03672 0.97693 0.92906 1.20988 1.03125 0.89567 0.97244 1.21081 0.99668 0.95678 0.95481 1.20644 1.00580 0.95722 0.93906 1.21021 0.99437 0.93102 0.99934 1.21214 0.98617 0.96566 0.96264 1.21607 1.01482 0.99931 0.92916 1.18157 0.99856 0.91443 0.84470 1.84762 1.40824 1.87089 1.19227 0.91070 0.94988 0.94194 0.94893 0.93997 0.91126 0.92989 0.84502 0.84581 0.74235 0.88674 0.89308 0.89362 0.89051 0.85304 0.83351 0.83432 0.73445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.90 7.77 71.98 0.56 -7.34 16 2 C 0.07 3.34 0.52 -52.93 -0.03 3.31 16 3 C -0.16 -7.79 7.78 71.98 0.56 -7.23 16 4 C -0.51 -26.21 8.01 25.60 0.21 -26.01 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 0.92 5.15 84.66 0.44 1.36 16 7 N -0.91 -49.91 9.35 21.45 0.20 -49.71 16 8 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 12 C -0.59 -21.39 5.01 71.99 0.36 -21.03 16 13 S 2.61 91.53 4.36 -56.49 -0.25 91.28 16 14 O -0.99 -39.36 15.40 -127.65 -1.97 -41.32 16 15 O -0.99 -40.36 15.68 -127.65 -2.00 -42.36 16 16 N -1.10 -27.52 5.32 -169.70 -0.90 -28.43 16 17 C 0.18 4.13 3.35 44.92 0.15 4.28 16 18 H 0.10 2.27 7.64 -2.39 -0.02 2.25 16 19 C -0.13 -2.48 6.78 31.51 0.21 -2.26 16 20 C -0.07 -1.17 6.71 30.51 0.20 -0.97 16 21 C -0.12 -2.27 6.11 -19.50 -0.12 -2.39 16 22 C -0.11 -2.27 5.77 -19.60 -0.11 -2.38 16 23 C -0.12 -2.42 10.04 22.32 0.22 -2.19 16 24 C -0.11 -1.90 10.04 22.23 0.22 -1.68 16 25 C -0.14 -2.34 9.98 22.34 0.22 -2.11 16 26 C 0.11 1.89 6.70 22.54 0.15 2.04 16 27 O -0.51 -7.56 13.45 -92.41 -1.24 -8.80 16 28 H 0.07 3.84 6.07 -2.38 -0.01 3.82 16 29 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.53 5.47 -2.39 -0.01 1.52 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 34 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 36 H 0.14 4.36 7.92 -2.39 -0.02 4.34 16 37 H 0.42 8.99 8.92 -96.74 -0.86 8.12 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 43 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.41 2.32 9.06 -74.06 -0.67 1.65 16 Total: -1.00 -69.18 367.92 -1.39 -70.57 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.51 Total: 29.76 kcal Atomic # 6 Polarization: -67.85 SS G_CDS: 3.25 Total: -64.60 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -0.70 Total: -78.14 kcal Atomic # 8 Polarization: -87.28 SS G_CDS: -5.21 Total: -92.49 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 91.53 SS G_CDS: -0.25 Total: 91.28 kcal Total: -69.18 -1.39 -70.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295737250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.118 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds