Wall clock time and date at job start Tue Mar 31 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 C 1.50700 * 109.47356 * 239.99680 * 2 1 3 5 5 H 1.08002 * 120.00530 * 237.68990 * 4 2 1 6 6 C 1.37877 * 119.99892 * 57.69913 * 4 2 1 7 7 N 1.31522 * 120.00053 * 6.57418 * 6 4 2 8 8 Si 1.86796 * 120.00178 * 186.57963 * 6 4 2 9 9 H 1.48506 * 109.47146 * 84.99034 * 8 6 4 10 10 H 1.48503 * 109.47276 * 204.99160 * 8 6 4 11 11 H 1.48499 * 109.47299 * 324.99313 * 8 6 4 12 12 C 1.52997 * 109.47117 * 119.99743 * 2 1 3 13 13 S 1.81398 * 109.47445 * 300.00311 * 12 2 1 14 14 O 1.42099 * 110.54294 * 291.62422 * 13 12 2 15 15 O 1.42104 * 110.54199 * 68.37225 * 13 12 2 16 16 N 1.65595 * 104.45258 * 179.97438 * 13 12 2 17 17 C 1.46506 * 120.00048 * 65.00103 * 16 13 12 18 18 H 1.08998 * 110.26546 * 335.70138 * 17 16 13 19 19 C 1.51363 * 110.30191 * 97.77561 * 17 16 13 20 20 C 1.38366 * 130.50663 * 316.30207 * 19 17 16 21 21 C 1.38107 * 120.26212 * 179.89059 * 20 19 17 22 22 C 1.38255 * 119.93377 * 359.91851 * 21 20 19 23 23 C 1.38101 * 119.93523 * 359.97438 * 22 21 20 24 24 C 1.38383 * 109.66611 * 136.04499 * 19 17 16 25 25 C 1.51369 * 109.78335 * 0.12574 * 24 19 17 26 26 C 1.54340 * 110.30130 * 213.62645 * 17 16 13 27 27 H 1.09003 * 110.82939 * 332.94973 * 26 17 16 28 28 O 1.42895 * 110.82408 * 96.50225 * 26 17 16 29 29 H 1.08998 * 109.47299 * 306.67053 * 1 2 3 30 30 H 1.09000 * 109.47060 * 66.67497 * 1 2 3 31 31 H 1.09001 * 109.47215 * 186.66807 * 1 2 3 32 32 H 1.08994 * 109.47206 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46795 * 299.99992 * 3 2 1 34 34 H 1.08998 * 109.46808 * 59.99528 * 3 2 1 35 35 H 0.96997 * 119.99541 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.47575 * 180.02562 * 12 2 1 37 37 H 1.08998 * 109.47112 * 60.00293 * 12 2 1 38 38 H 0.96999 * 120.00340 * 244.99459 * 16 13 12 39 39 H 1.07994 * 119.84209 * 359.81015 * 20 19 17 40 40 H 1.07993 * 120.03167 * 179.88768 * 21 20 19 41 41 H 1.07998 * 120.03388 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.88932 * 179.97438 * 23 22 21 43 43 H 1.08997 * 110.30365 * 223.80459 * 25 24 19 44 44 H 1.09000 * 110.38582 * 101.69559 * 25 24 19 45 45 H 0.96706 * 114.00454 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6837 -1.5663 -1.1318 6 6 1.6606 -0.2678 -2.4821 7 7 0.9755 0.8478 -2.6085 8 14 2.1298 -1.2525 -3.9985 9 1 1.1194 -2.3158 -4.2305 10 1 2.1799 -0.3515 -5.1779 11 1 3.4631 -1.8731 -3.7928 12 6 2.0399 -0.7212 1.2492 13 16 1.4353 0.1339 2.7304 14 8 2.0478 1.4101 2.8544 15 8 0.0278 -0.0183 2.8544 16 7 2.0529 -0.7407 3.9936 17 6 3.5013 -0.7980 4.2060 18 1 4.0279 -0.6056 3.2713 19 6 3.9177 0.2057 5.2597 20 6 3.5361 1.5225 5.4472 21 6 4.0551 2.2547 6.4969 22 6 4.9582 1.6707 7.3656 23 6 5.3392 0.3560 7.1823 24 6 4.8202 -0.3799 6.1300 25 6 5.0727 -1.8143 5.7176 26 6 3.9051 -2.1749 4.7747 27 1 3.0811 -2.6211 5.3315 28 8 4.3454 -3.0461 3.7312 29 1 -0.3634 0.6137 0.8242 30 1 -0.3633 0.4069 -0.9437 31 1 -0.3634 -1.0207 0.1193 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 0.7137 1.1589 -3.4891 36 1 3.1300 -0.7208 1.2496 37 1 1.6767 -1.7488 1.2493 38 1 1.4557 -1.2151 4.5930 39 1 2.8307 1.9793 4.7690 40 1 3.7561 3.2827 6.6387 41 1 5.3647 2.2417 8.1872 42 1 6.0451 -0.0995 7.8611 43 1 5.0680 -2.4656 6.5916 44 1 6.0234 -1.8962 5.1908 45 1 4.6108 -3.9242 4.0375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296355211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:05 Heat of formation + Delta-G solvation = -94.428066 kcal Electronic energy + Delta-G solvation = -28635.739524 eV Core-core repulsion = 24745.195150 eV Total energy + Delta-G solvation = -3890.544374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.49275 -37.48917 -36.53284 -36.25137 -35.35330 -35.05594 -33.17294 -31.64829 -30.75157 -28.23324 -26.62903 -26.39157 -25.69922 -25.19551 -22.60635 -21.21624 -21.04813 -19.69216 -18.86031 -17.78025 -17.15111 -16.93233 -16.01568 -15.89519 -15.43331 -15.18359 -15.07266 -14.73172 -14.35713 -14.18338 -13.71747 -13.47899 -13.28011 -13.13409 -12.93033 -12.85600 -12.48872 -12.44096 -12.01614 -11.86343 -11.54119 -11.42111 -11.20168 -11.08684 -10.96260 -10.94132 -10.83001 -10.64416 -10.43184 -10.33248 -10.26915 -10.08081 -9.67642 -9.62731 -9.31315 -8.85299 -8.70658 -8.66541 -8.35514 -6.01716 -4.12733 0.84277 1.24239 1.36632 3.15696 3.28295 3.34998 3.37173 3.67635 3.76802 4.12648 4.26603 4.39523 4.51386 4.68930 4.71874 4.86344 4.96115 5.07887 5.13357 5.15310 5.23362 5.32421 5.46889 5.52582 5.69892 5.73354 5.75306 5.87843 6.00899 6.10504 6.35664 6.42289 6.53150 6.58198 6.71957 6.80635 6.92654 6.94875 7.03331 7.10697 7.33603 7.37783 7.50901 7.70358 7.99625 8.12479 8.36208 8.85804 9.52201 10.99477 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.003578 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.679751 B = 7823.245528 C = 8441.822993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.501 4.501 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.577 4.577 13 S 2.589 3.411 14 O -0.961 6.961 15 O -0.965 6.965 16 N -1.119 6.119 17 C 0.201 3.799 18 H 0.111 0.889 19 C -0.109 4.109 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.093 4.093 25 C -0.113 4.113 26 C 0.101 3.899 27 H 0.080 0.920 28 O -0.551 6.551 29 H 0.025 0.975 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.097 0.903 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.412 0.588 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.913 -4.813 19.308 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.711 4.711 13 S 2.688 3.312 14 O -0.950 6.950 15 O -0.955 6.955 16 N -0.874 5.874 17 C 0.093 3.907 18 H 0.129 0.871 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.094 4.094 25 C -0.151 4.151 26 C 0.040 3.960 27 H 0.097 0.903 28 O -0.356 6.356 29 H 0.044 0.956 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.245 0.755 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 7.250 -3.293 18.782 20.401 hybrid contribution 0.581 -1.736 -0.434 1.882 sum 7.832 -5.029 18.348 20.574 Atomic orbital electron populations 1.22210 0.97035 0.99635 1.02959 1.17937 0.92666 0.92325 0.89114 1.22303 0.99725 0.97711 1.02378 1.20946 1.29950 1.13761 0.89373 0.92230 1.24937 0.95105 0.94826 0.98874 1.69817 1.38611 1.20197 1.23492 0.86564 0.78899 0.79962 0.82301 1.20561 1.21221 1.19974 1.30498 1.11323 1.12833 1.16480 1.05738 0.74379 0.75402 0.75662 1.93501 1.78028 1.38210 1.85299 1.93560 1.29460 1.86696 1.85806 1.55967 1.12823 1.70985 1.47595 1.19986 0.80862 0.91469 0.98422 0.87121 1.20661 0.98445 0.94910 0.97037 1.21173 0.99161 0.92769 0.97200 1.21136 0.97782 1.00040 0.95259 1.21067 0.97991 0.94856 0.99454 1.20522 1.00819 0.94328 0.97657 1.20372 0.97819 0.95654 0.95530 1.21771 1.00166 0.93299 0.99865 1.22686 0.95209 0.90258 0.87845 0.90256 1.86589 1.87288 1.27503 1.34247 0.95584 0.88734 0.94608 0.94514 0.88459 0.95391 0.92753 0.86425 0.86155 0.75500 0.83600 0.85706 0.85976 0.86365 0.90166 0.88746 0.76987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 7.58 37.16 0.28 -3.72 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 3 C -0.16 -4.06 7.80 37.16 0.29 -3.77 16 4 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.55 7.75 -52.49 -0.41 1.15 16 6 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 7 N -0.88 -24.27 9.39 55.43 0.52 -23.75 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C -0.58 -11.58 4.91 37.16 0.18 -11.40 16 13 S 2.59 48.11 4.42 -107.50 -0.48 47.64 16 14 O -0.96 -19.45 12.99 -57.54 -0.75 -20.20 16 15 O -0.96 -20.35 15.84 -57.54 -0.91 -21.26 16 16 N -1.12 -15.73 5.40 -5.00 -0.03 -15.76 16 17 C 0.20 2.65 3.04 -68.05 -0.21 2.44 16 18 H 0.11 1.57 7.20 -51.93 -0.37 1.20 16 19 C -0.11 -1.46 5.80 -104.20 -0.60 -2.06 16 20 C -0.08 -1.22 9.83 -39.58 -0.39 -1.60 16 21 C -0.12 -1.47 10.05 -39.62 -0.40 -1.87 16 22 C -0.12 -1.17 10.05 -39.63 -0.40 -1.57 16 23 C -0.12 -1.16 10.04 -39.54 -0.40 -1.55 16 24 C -0.09 -1.03 6.14 -104.14 -0.64 -1.67 16 25 C -0.11 -0.97 6.52 -26.85 -0.18 -1.14 16 26 C 0.10 0.99 4.14 -25.32 -0.10 0.89 16 27 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 28 O -0.55 -5.47 13.39 -35.23 -0.47 -5.95 16 29 H 0.03 0.61 5.96 -51.93 -0.31 0.30 16 30 H 0.09 2.53 5.99 -51.93 -0.31 2.21 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 2.61 6.01 -51.93 -0.31 2.29 16 34 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.12 2.20 7.48 -51.92 -0.39 1.81 16 37 H 0.12 2.24 8.14 -51.92 -0.42 1.82 16 38 H 0.41 4.84 8.63 -34.47 -0.30 4.54 16 39 H 0.15 2.36 5.67 -52.49 -0.30 2.06 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.38 1.92 9.12 45.56 0.42 2.33 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -33.18 362.09 -10.17 -43.36 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.49 Total: 11.72 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: -3.01 Total: -37.06 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.49 Total: -39.51 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -2.13 Total: -47.40 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 48.11 SS G_CDS: -0.48 Total: 47.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.18 -10.17 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296355211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.071 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds