Wall clock time and date at job start Tue Mar 31 2020 22:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 C 1.50700 * 109.47356 * 239.99680 * 2 1 3 5 5 H 1.08002 * 120.00530 * 237.68990 * 4 2 1 6 6 C 1.37877 * 119.99892 * 57.69913 * 4 2 1 7 7 N 1.31522 * 120.00053 * 6.57418 * 6 4 2 8 8 Si 1.86796 * 120.00178 * 186.57963 * 6 4 2 9 9 H 1.48506 * 109.47146 * 84.99034 * 8 6 4 10 10 H 1.48503 * 109.47276 * 204.99160 * 8 6 4 11 11 H 1.48499 * 109.47299 * 324.99313 * 8 6 4 12 12 C 1.52997 * 109.47117 * 119.99743 * 2 1 3 13 13 S 1.81398 * 109.47445 * 300.00311 * 12 2 1 14 14 O 1.42099 * 110.54294 * 291.62422 * 13 12 2 15 15 O 1.42104 * 110.54199 * 68.37225 * 13 12 2 16 16 N 1.65595 * 104.45258 * 179.97438 * 13 12 2 17 17 C 1.46506 * 120.00048 * 65.00103 * 16 13 12 18 18 H 1.08998 * 110.26546 * 335.70138 * 17 16 13 19 19 C 1.51363 * 110.30191 * 97.77561 * 17 16 13 20 20 C 1.38366 * 130.50663 * 316.30207 * 19 17 16 21 21 C 1.38107 * 120.26212 * 179.89059 * 20 19 17 22 22 C 1.38255 * 119.93377 * 359.91851 * 21 20 19 23 23 C 1.38101 * 119.93523 * 359.97438 * 22 21 20 24 24 C 1.38383 * 109.66611 * 136.04499 * 19 17 16 25 25 C 1.51369 * 109.78335 * 0.12574 * 24 19 17 26 26 C 1.54340 * 110.30130 * 213.62645 * 17 16 13 27 27 H 1.09003 * 110.82939 * 332.94973 * 26 17 16 28 28 O 1.42895 * 110.82408 * 96.50225 * 26 17 16 29 29 H 1.08998 * 109.47299 * 306.67053 * 1 2 3 30 30 H 1.09000 * 109.47060 * 66.67497 * 1 2 3 31 31 H 1.09001 * 109.47215 * 186.66807 * 1 2 3 32 32 H 1.08994 * 109.47206 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46795 * 299.99992 * 3 2 1 34 34 H 1.08998 * 109.46808 * 59.99528 * 3 2 1 35 35 H 0.96997 * 119.99541 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.47575 * 180.02562 * 12 2 1 37 37 H 1.08998 * 109.47112 * 60.00293 * 12 2 1 38 38 H 0.96999 * 120.00340 * 244.99459 * 16 13 12 39 39 H 1.07994 * 119.84209 * 359.81015 * 20 19 17 40 40 H 1.07993 * 120.03167 * 179.88768 * 21 20 19 41 41 H 1.07998 * 120.03388 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.88932 * 179.97438 * 23 22 21 43 43 H 1.08997 * 110.30365 * 223.80459 * 25 24 19 44 44 H 1.09000 * 110.38582 * 101.69559 * 25 24 19 45 45 H 0.96706 * 114.00454 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6837 -1.5663 -1.1318 6 6 1.6606 -0.2678 -2.4821 7 7 0.9755 0.8478 -2.6085 8 14 2.1298 -1.2525 -3.9985 9 1 1.1194 -2.3158 -4.2305 10 1 2.1799 -0.3515 -5.1779 11 1 3.4631 -1.8731 -3.7928 12 6 2.0399 -0.7212 1.2492 13 16 1.4353 0.1339 2.7304 14 8 2.0478 1.4101 2.8544 15 8 0.0278 -0.0183 2.8544 16 7 2.0529 -0.7407 3.9936 17 6 3.5013 -0.7980 4.2060 18 1 4.0279 -0.6056 3.2713 19 6 3.9177 0.2057 5.2597 20 6 3.5361 1.5225 5.4472 21 6 4.0551 2.2547 6.4969 22 6 4.9582 1.6707 7.3656 23 6 5.3392 0.3560 7.1823 24 6 4.8202 -0.3799 6.1300 25 6 5.0727 -1.8143 5.7176 26 6 3.9051 -2.1749 4.7747 27 1 3.0811 -2.6211 5.3315 28 8 4.3454 -3.0461 3.7312 29 1 -0.3634 0.6137 0.8242 30 1 -0.3633 0.4069 -0.9437 31 1 -0.3634 -1.0207 0.1193 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 0.7137 1.1589 -3.4891 36 1 3.1300 -0.7208 1.2496 37 1 1.6767 -1.7488 1.2493 38 1 1.4557 -1.2151 4.5930 39 1 2.8307 1.9793 4.7690 40 1 3.7561 3.2827 6.6387 41 1 5.3647 2.2417 8.1872 42 1 6.0451 -0.0995 7.8611 43 1 5.0680 -2.4656 6.5916 44 1 6.0234 -1.8962 5.1908 45 1 4.6108 -3.9242 4.0375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296355211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:04 Heat of formation + Delta-G solvation = -118.646595 kcal Electronic energy + Delta-G solvation = -28636.789718 eV Core-core repulsion = 24745.195150 eV Total energy + Delta-G solvation = -3891.594568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.33230 -38.27669 -38.15209 -38.12026 -36.93740 -36.03187 -34.06842 -33.65202 -31.65713 -29.01455 -28.36402 -27.71987 -27.37272 -27.19481 -23.42091 -22.02533 -21.96917 -21.43728 -20.36517 -19.00057 -18.24032 -18.04427 -17.79834 -16.99635 -16.75066 -16.62649 -16.42177 -16.15196 -15.36593 -15.18361 -14.93518 -14.70450 -14.54205 -14.44856 -14.28097 -14.05829 -13.78886 -13.72759 -13.47338 -13.18261 -13.04546 -12.91035 -12.81977 -12.77877 -12.54536 -12.36476 -12.23327 -12.16733 -12.01152 -11.84207 -11.66341 -11.59188 -11.40027 -11.09918 -10.73670 -10.46462 -10.39565 -9.73506 -9.51599 -8.04568 -6.22577 -0.65944 0.37815 0.48927 1.43990 1.45170 1.53801 1.83076 2.43811 2.78516 2.82826 3.02077 3.17059 3.27841 3.39258 3.68942 3.83531 3.96531 4.08022 4.09351 4.20676 4.23994 4.30655 4.41798 4.56881 4.62483 4.70453 4.78327 4.82833 4.86443 4.89249 4.96085 5.04383 5.06079 5.14568 5.25060 5.35948 5.47287 5.54296 5.63253 5.65568 5.67898 5.95023 6.02877 6.09818 6.12742 6.33551 6.81368 6.93469 7.45228 8.95335 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.003578 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.679751 B = 7823.245528 C = 8441.822993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.070 3.930 3 C -0.158 4.158 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.018 3.982 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C -0.582 4.582 13 S 2.612 3.388 14 O -0.980 6.980 15 O -0.991 6.991 16 N -1.102 6.102 17 C 0.186 3.814 18 H 0.093 0.907 19 C -0.133 4.133 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.112 4.112 23 C -0.113 4.113 24 C -0.094 4.094 25 C -0.104 4.104 26 C 0.108 3.892 27 H 0.100 0.900 28 O -0.570 6.570 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.424 0.576 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -6.930 21.518 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.068 3.932 3 C -0.216 4.216 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.545 5.545 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.715 4.715 13 S 2.709 3.291 14 O -0.970 6.970 15 O -0.982 6.982 16 N -0.861 5.861 17 C 0.079 3.921 18 H 0.111 0.889 19 C -0.135 4.135 20 C -0.137 4.137 21 C -0.155 4.155 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.095 4.095 25 C -0.141 4.141 26 C 0.047 3.953 27 H 0.118 0.882 28 O -0.380 6.380 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.261 0.739 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 9.142 -5.436 20.991 23.532 hybrid contribution 0.043 -1.044 -1.034 1.470 sum 9.185 -6.480 19.957 22.905 Atomic orbital electron populations 1.22138 0.97683 0.99826 1.01778 1.17926 0.92304 0.92218 0.90787 1.22219 0.99605 0.98300 1.01472 1.21266 1.30096 1.13953 0.90460 0.92104 1.25680 0.95193 0.95645 1.01594 1.69953 1.39325 1.21294 1.23945 0.85626 0.78811 0.78607 0.78928 1.20100 1.21165 1.19299 1.30434 1.12051 1.13305 1.15687 1.04794 0.73481 0.75105 0.75717 1.93486 1.78224 1.39685 1.85582 1.93514 1.31290 1.87096 1.86275 1.55464 1.13941 1.70598 1.46082 1.20280 0.79451 0.94209 0.98155 0.88875 1.20743 0.99992 0.94710 0.98088 1.21141 1.00301 0.93938 0.98307 1.21340 0.98382 1.00596 0.95151 1.21447 0.96773 0.95341 0.99430 1.20954 1.00538 0.94142 0.97450 1.20735 0.96764 0.96947 0.95019 1.21784 0.99598 0.92063 1.00699 1.22639 0.96486 0.88486 0.87665 0.88231 1.86537 1.87474 1.29030 1.34933 0.95334 0.90960 0.93965 0.94489 0.90780 0.94811 0.92849 0.85386 0.84738 0.73946 0.86634 0.84755 0.82952 0.83054 0.86833 0.88143 0.74434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.97 7.58 71.98 0.55 -7.42 16 2 C 0.07 3.48 0.52 -52.93 -0.03 3.45 16 3 C -0.16 -8.10 7.80 71.98 0.56 -7.54 16 4 C -0.52 -27.79 8.01 25.60 0.20 -27.59 16 5 H 0.06 3.16 7.75 -2.91 -0.02 3.14 16 6 C 0.02 0.99 5.09 84.65 0.43 1.42 16 7 N -0.91 -50.97 9.39 21.45 0.20 -50.77 16 8 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 C -0.58 -23.43 4.91 71.98 0.35 -23.08 16 13 S 2.61 98.53 4.42 -56.49 -0.25 98.28 16 14 O -0.98 -41.19 12.99 -127.65 -1.66 -42.85 16 15 O -0.99 -42.31 15.84 -127.65 -2.02 -44.34 16 16 N -1.10 -30.53 5.40 -169.72 -0.92 -31.44 16 17 C 0.19 4.77 3.04 44.91 0.14 4.91 16 18 H 0.09 2.67 7.20 -2.39 -0.02 2.65 16 19 C -0.13 -3.49 5.80 -19.59 -0.11 -3.61 16 20 C -0.12 -3.47 9.83 22.27 0.22 -3.25 16 21 C -0.14 -3.17 10.05 22.24 0.22 -2.95 16 22 C -0.11 -1.98 10.05 22.24 0.22 -1.75 16 23 C -0.11 -1.86 10.04 22.30 0.22 -1.64 16 24 C -0.09 -1.84 6.14 -19.55 -0.12 -1.96 16 25 C -0.10 -1.38 6.52 30.52 0.20 -1.18 16 26 C 0.11 1.82 4.14 31.51 0.13 1.96 16 27 H 0.10 1.28 7.88 -2.39 -0.02 1.26 16 28 O -0.57 -9.82 13.39 -148.98 -1.99 -11.81 16 29 H 0.03 1.39 5.96 -2.39 -0.01 1.37 16 30 H 0.07 3.98 5.99 -2.39 -0.01 3.97 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 4.12 6.01 -2.39 -0.01 4.11 16 34 H 0.03 1.64 5.46 -2.39 -0.01 1.63 16 35 H 0.26 14.08 8.31 -92.71 -0.77 13.30 16 36 H 0.13 4.81 7.48 -2.39 -0.02 4.79 16 37 H 0.13 4.94 8.14 -2.39 -0.02 4.92 16 38 H 0.42 9.56 8.63 -96.75 -0.83 8.72 16 39 H 0.12 4.01 5.67 -2.91 -0.02 4.00 16 40 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 1.27 8.10 -2.39 -0.02 1.25 16 45 H 0.40 2.71 9.12 -74.05 -0.68 2.03 16 Total: -1.00 -73.28 362.09 -1.90 -75.18 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.48 Total: 33.17 kcal Atomic # 6 Polarization: -73.43 SS G_CDS: 3.19 Total: -70.24 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -0.71 Total: -82.22 kcal Atomic # 8 Polarization: -93.33 SS G_CDS: -5.68 Total: -99.00 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 98.53 SS G_CDS: -0.25 Total: 98.28 kcal Total: -73.28 -1.90 -75.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296355211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.465 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds