Wall clock time and date at job start Tue Mar 31 2020 22:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47102 * 2 1 4 4 C 1.50698 * 109.47507 * 239.99271 * 2 1 3 5 5 H 1.07993 * 120.00686 * 240.00261 * 4 2 1 6 6 C 1.37882 * 119.99578 * 60.00129 * 4 2 1 7 7 N 1.31517 * 119.99875 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00100 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47049 * 59.99992 * 8 6 4 10 10 H 1.48498 * 109.47328 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47150 * 300.00373 * 8 6 4 12 12 C 1.53006 * 109.46931 * 119.99693 * 2 1 3 13 13 S 1.81405 * 109.46890 * 299.99905 * 12 2 1 14 14 O 1.42099 * 110.54122 * 68.26017 * 13 12 2 15 15 O 1.42096 * 110.54431 * 291.50898 * 13 12 2 16 16 N 1.65597 * 104.44707 * 179.87926 * 13 12 2 17 17 C 1.46504 * 119.99981 * 63.49328 * 16 13 12 18 18 H 1.09006 * 110.34570 * 355.59681 * 17 16 13 19 19 C 1.51678 * 110.25713 * 233.25765 * 17 16 13 20 20 C 1.38498 * 130.30496 * 78.28837 * 19 17 16 21 21 C 1.38105 * 120.21382 * 179.79067 * 20 19 17 22 22 C 1.38257 * 119.93046 * 0.02562 * 21 20 19 23 23 C 1.38103 * 119.93934 * 0.02562 * 22 21 20 24 24 C 1.38214 * 109.83798 * 258.10587 * 19 17 16 25 25 C 1.51369 * 109.76122 * 0.15282 * 24 19 17 26 26 C 1.54344 * 110.30447 * 117.71730 * 17 16 13 27 27 H 1.09003 * 110.82516 * 210.99743 * 26 17 16 28 28 O 1.42893 * 110.82299 * 334.35856 * 26 17 16 29 29 H 1.08997 * 109.47252 * 300.00751 * 1 2 3 30 30 H 1.09004 * 109.46500 * 60.00442 * 1 2 3 31 31 H 1.08997 * 109.47290 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47013 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46602 * 299.99244 * 3 2 1 34 34 H 1.08995 * 109.47169 * 59.99527 * 3 2 1 35 35 H 0.97003 * 119.99460 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.46996 * 180.02562 * 12 2 1 37 37 H 1.08997 * 109.47002 * 59.99984 * 12 2 1 38 38 H 0.96995 * 120.00593 * 243.48601 * 16 13 12 39 39 H 1.07998 * 119.89430 * 359.80919 * 20 19 17 40 40 H 1.08000 * 120.03592 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.03111 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.89251 * 180.02562 * 23 22 21 43 43 H 1.08992 * 110.30204 * 223.89561 * 25 24 19 44 44 H 1.08999 * 110.30253 * 101.74267 * 25 24 19 45 45 H 0.96702 * 113.99987 * 177.29691 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8282 -2.5201 -4.0080 10 1 1.8281 -0.4195 -5.2204 11 1 3.8076 -1.1192 -4.0075 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1341 2.7304 14 8 0.0275 -0.0158 2.8529 15 8 2.0498 1.4091 2.8558 16 7 2.0506 -0.7421 3.9937 17 6 3.5002 -0.8286 4.1877 18 1 4.0223 -0.3271 3.3728 19 6 3.9317 -2.2797 4.2817 20 6 4.1187 -3.2250 3.2868 21 6 4.5253 -4.5043 3.6113 22 6 4.7461 -4.8435 4.9333 23 6 4.5592 -3.9026 5.9268 24 6 4.1528 -2.6187 5.6032 25 6 3.8823 -1.4225 6.4905 26 6 3.8974 -0.2046 5.5424 27 1 4.8943 0.2331 5.4899 28 8 2.9375 0.7708 5.9533 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 0.7090 1.1611 -3.4845 36 1 3.1300 -0.7208 1.2496 37 1 1.6766 -1.7488 1.2494 38 1 1.4515 -1.1979 4.6053 39 1 3.9463 -2.9607 2.2540 40 1 4.6706 -5.2390 2.8332 41 1 5.0645 -5.8434 5.1888 42 1 4.7323 -4.1683 6.9591 43 1 4.6645 -1.3255 7.2433 44 1 2.9070 -1.5184 6.9676 45 1 3.1202 1.1624 6.8184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296355234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:09 Heat of formation + Delta-G solvation = -91.333194 kcal Electronic energy + Delta-G solvation = -28752.177692 eV Core-core repulsion = 24861.767521 eV Total energy + Delta-G solvation = -3890.410170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.55217 -37.49218 -36.39068 -36.23406 -35.17753 -34.87317 -32.97490 -31.65108 -30.93033 -28.25651 -26.66596 -26.51492 -25.68077 -25.20031 -22.64972 -21.23416 -20.97527 -19.62551 -18.77380 -17.57068 -17.40171 -16.67691 -15.93692 -15.73098 -15.50793 -15.43643 -15.06940 -14.71283 -14.53461 -13.99633 -13.67922 -13.60718 -13.27818 -12.99907 -12.97460 -12.79517 -12.46732 -12.15003 -12.07445 -11.97161 -11.46501 -11.32501 -11.26738 -11.08617 -11.02294 -10.90495 -10.80685 -10.64585 -10.35662 -10.23204 -10.19700 -10.06923 -9.64299 -9.61963 -9.21825 -8.99645 -8.80117 -8.64393 -8.37910 -6.01303 -4.13332 0.88640 1.17032 1.22325 3.23856 3.27633 3.33352 3.34579 3.65308 3.82976 4.15649 4.33753 4.39341 4.49527 4.73903 4.79394 4.85935 4.90189 4.99723 5.14031 5.16790 5.24145 5.29496 5.39305 5.54826 5.56295 5.70759 5.75024 5.81307 5.91616 6.08239 6.24886 6.34331 6.40460 6.42944 6.73126 6.80324 6.83189 6.94927 7.06885 7.21719 7.34777 7.53636 7.57334 7.69497 8.00876 8.12062 8.35338 8.84669 9.51784 10.99953 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.004128 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.982892 B = 6781.383697 C = 8247.868210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.163 4.163 4 C -0.501 4.501 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.587 4.587 13 S 2.595 3.405 14 O -0.966 6.966 15 O -0.955 6.955 16 N -1.102 6.102 17 C 0.202 3.798 18 H 0.104 0.896 19 C -0.111 4.111 20 C -0.088 4.088 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.113 4.113 24 C -0.084 4.084 25 C -0.117 4.117 26 C 0.096 3.904 27 H 0.079 0.921 28 O -0.538 6.538 29 H 0.028 0.972 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.095 0.905 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.412 0.588 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.689 -7.805 18.047 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.081 3.919 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.720 4.720 13 S 2.693 3.307 14 O -0.956 6.956 15 O -0.945 6.945 16 N -0.855 5.855 17 C 0.094 3.906 18 H 0.122 0.878 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.139 4.139 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.085 4.085 25 C -0.154 4.154 26 C 0.034 3.966 27 H 0.097 0.903 28 O -0.342 6.342 29 H 0.046 0.954 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.245 0.755 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.891 -6.920 17.313 20.246 hybrid contribution 0.809 -1.332 -0.336 1.595 sum 8.700 -8.252 16.977 20.785 Atomic orbital electron populations 1.22270 0.96948 1.00597 1.02312 1.17909 0.92805 0.92183 0.88998 1.22269 0.99634 0.97830 1.02370 1.20892 1.31733 1.12038 0.89415 0.92414 1.24935 0.94914 0.94977 0.98883 1.69798 1.36261 1.22542 1.23535 0.86610 0.79118 0.79710 0.82245 1.20310 1.21197 1.20307 1.30612 1.10968 1.13018 1.17391 1.05616 0.74424 0.75311 0.75363 1.93543 1.29578 1.86705 1.85786 1.93554 1.77862 1.37858 1.85213 1.55608 1.11904 1.71425 1.46580 1.20017 0.81916 0.91004 0.97691 0.87822 1.20746 1.00678 0.95819 0.94099 1.20829 0.97730 0.92600 0.99475 1.21107 0.99942 0.96229 0.96588 1.21084 0.99869 0.99172 0.92938 1.20582 1.00900 0.92162 0.99417 1.20384 0.98806 0.94514 0.94764 1.21860 1.03063 0.92489 0.97969 1.22685 0.92426 0.87846 0.93606 0.90311 1.86680 1.50570 1.56847 1.40061 0.95368 0.88667 0.94524 0.94542 0.88681 0.95294 0.92711 0.86764 0.86345 0.75498 0.85301 0.85534 0.85849 0.86279 0.90264 0.89062 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 7.77 37.16 0.29 -3.82 16 2 C 0.08 2.03 0.52 -155.66 -0.08 1.95 16 3 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 4 C -0.50 -13.13 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.22 9.35 55.43 0.52 -23.70 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C -0.59 -11.57 4.97 37.16 0.18 -11.39 16 13 S 2.60 50.24 4.35 -107.50 -0.47 49.78 16 14 O -0.97 -21.33 15.69 -57.54 -0.90 -22.23 16 15 O -0.96 -20.86 15.43 -57.54 -0.89 -21.75 16 16 N -1.10 -16.33 4.63 -4.86 -0.02 -16.36 16 17 C 0.20 2.61 3.31 -67.89 -0.22 2.38 16 18 H 0.10 1.35 7.62 -51.93 -0.40 0.95 16 19 C -0.11 -1.31 5.78 -104.05 -0.60 -1.91 16 20 C -0.09 -1.02 10.04 -39.53 -0.40 -1.42 16 21 C -0.12 -1.21 10.05 -39.62 -0.40 -1.61 16 22 C -0.11 -1.01 10.05 -39.62 -0.40 -1.40 16 23 C -0.11 -1.02 10.04 -39.53 -0.40 -1.42 16 24 C -0.08 -0.85 6.14 -104.20 -0.64 -1.49 16 25 C -0.12 -0.99 6.52 -26.84 -0.18 -1.17 16 26 C 0.10 1.01 4.36 -25.32 -0.11 0.90 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 O -0.54 -6.29 12.67 -35.23 -0.45 -6.73 16 29 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 30 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 34 H 0.03 0.69 5.47 -51.93 -0.28 0.40 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.11 2.00 7.90 -51.92 -0.41 1.59 16 37 H 0.12 2.14 8.14 -51.93 -0.42 1.71 16 38 H 0.41 5.58 8.92 -34.47 -0.31 5.27 16 39 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.38 2.48 9.12 45.56 0.42 2.90 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -34.07 367.18 -10.39 -44.46 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.66 Total: 11.33 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: -3.03 Total: -35.94 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.50 Total: -40.06 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -2.24 Total: -50.71 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 50.24 SS G_CDS: -0.47 Total: 49.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.07 -10.39 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296355234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.878 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds