Wall clock time and date at job start Tue Mar 31 2020 22:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47102 * 2 1 4 4 C 1.50698 * 109.47507 * 239.99271 * 2 1 3 5 5 H 1.07993 * 120.00686 * 240.00261 * 4 2 1 6 6 C 1.37882 * 119.99578 * 60.00129 * 4 2 1 7 7 N 1.31517 * 119.99875 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00100 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47049 * 59.99992 * 8 6 4 10 10 H 1.48498 * 109.47328 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47150 * 300.00373 * 8 6 4 12 12 C 1.53006 * 109.46931 * 119.99693 * 2 1 3 13 13 S 1.81405 * 109.46890 * 299.99905 * 12 2 1 14 14 O 1.42099 * 110.54122 * 68.26017 * 13 12 2 15 15 O 1.42096 * 110.54431 * 291.50898 * 13 12 2 16 16 N 1.65597 * 104.44707 * 179.87926 * 13 12 2 17 17 C 1.46504 * 119.99981 * 63.49328 * 16 13 12 18 18 H 1.09006 * 110.34570 * 355.59681 * 17 16 13 19 19 C 1.51678 * 110.25713 * 233.25765 * 17 16 13 20 20 C 1.38498 * 130.30496 * 78.28837 * 19 17 16 21 21 C 1.38105 * 120.21382 * 179.79067 * 20 19 17 22 22 C 1.38257 * 119.93046 * 0.02562 * 21 20 19 23 23 C 1.38103 * 119.93934 * 0.02562 * 22 21 20 24 24 C 1.38214 * 109.83798 * 258.10587 * 19 17 16 25 25 C 1.51369 * 109.76122 * 0.15282 * 24 19 17 26 26 C 1.54344 * 110.30447 * 117.71730 * 17 16 13 27 27 H 1.09003 * 110.82516 * 210.99743 * 26 17 16 28 28 O 1.42893 * 110.82299 * 334.35856 * 26 17 16 29 29 H 1.08997 * 109.47252 * 300.00751 * 1 2 3 30 30 H 1.09004 * 109.46500 * 60.00442 * 1 2 3 31 31 H 1.08997 * 109.47290 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47013 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46602 * 299.99244 * 3 2 1 34 34 H 1.08995 * 109.47169 * 59.99527 * 3 2 1 35 35 H 0.97003 * 119.99460 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.46996 * 180.02562 * 12 2 1 37 37 H 1.08997 * 109.47002 * 59.99984 * 12 2 1 38 38 H 0.96995 * 120.00593 * 243.48601 * 16 13 12 39 39 H 1.07998 * 119.89430 * 359.80919 * 20 19 17 40 40 H 1.08000 * 120.03592 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.03111 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.89251 * 180.02562 * 23 22 21 43 43 H 1.08992 * 110.30204 * 223.89561 * 25 24 19 44 44 H 1.08999 * 110.30253 * 101.74267 * 25 24 19 45 45 H 0.96702 * 113.99987 * 177.29691 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8282 -2.5201 -4.0080 10 1 1.8281 -0.4195 -5.2204 11 1 3.8076 -1.1192 -4.0075 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1341 2.7304 14 8 0.0275 -0.0158 2.8529 15 8 2.0498 1.4091 2.8558 16 7 2.0506 -0.7421 3.9937 17 6 3.5002 -0.8286 4.1877 18 1 4.0223 -0.3271 3.3728 19 6 3.9317 -2.2797 4.2817 20 6 4.1187 -3.2250 3.2868 21 6 4.5253 -4.5043 3.6113 22 6 4.7461 -4.8435 4.9333 23 6 4.5592 -3.9026 5.9268 24 6 4.1528 -2.6187 5.6032 25 6 3.8823 -1.4225 6.4905 26 6 3.8974 -0.2046 5.5424 27 1 4.8943 0.2331 5.4899 28 8 2.9375 0.7708 5.9533 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 0.7090 1.1611 -3.4845 36 1 3.1300 -0.7208 1.2496 37 1 1.6766 -1.7488 1.2494 38 1 1.4515 -1.1979 4.6053 39 1 3.9463 -2.9607 2.2540 40 1 4.6706 -5.2390 2.8332 41 1 5.0645 -5.8434 5.1888 42 1 4.7323 -4.1683 6.9591 43 1 4.6645 -1.3255 7.2433 44 1 2.9070 -1.5184 6.9676 45 1 3.1202 1.1624 6.8184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296355234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:08 Heat of formation + Delta-G solvation = -115.894294 kcal Electronic energy + Delta-G solvation = -28753.242741 eV Core-core repulsion = 24861.767521 eV Total energy + Delta-G solvation = -3891.475219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.33570 -38.33062 -38.12809 -38.00793 -36.84511 -35.82986 -33.86182 -33.63446 -31.75356 -29.00345 -28.34349 -27.70404 -27.46184 -27.21875 -23.40027 -21.95325 -21.87346 -21.40549 -20.29881 -18.89626 -18.44246 -17.96065 -17.52802 -16.91645 -16.70123 -16.63254 -16.44653 -16.08705 -15.79978 -15.02870 -14.78448 -14.70719 -14.44480 -14.40197 -14.31822 -14.00580 -13.82370 -13.58671 -13.47955 -13.04512 -12.95484 -12.88453 -12.84817 -12.78727 -12.52567 -12.27833 -12.17370 -12.16051 -12.03154 -11.91173 -11.66776 -11.57133 -11.39358 -10.96016 -10.69473 -10.40939 -10.32203 -9.76943 -9.53715 -8.02333 -6.21079 -0.61375 0.36611 0.47668 1.45770 1.45812 1.53299 1.92876 2.44619 2.83263 2.90223 3.05505 3.19806 3.35355 3.44385 3.64599 3.89170 3.98743 4.07139 4.12542 4.19234 4.28401 4.31187 4.44579 4.58293 4.63092 4.70682 4.78348 4.85290 4.86535 4.87403 4.97642 5.05293 5.07894 5.12523 5.23563 5.37004 5.49779 5.54118 5.62923 5.64299 5.65821 5.95782 6.07588 6.10249 6.11072 6.33751 6.83022 6.99770 7.46978 8.97588 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.004128 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.982892 B = 6781.383697 C = 8247.868210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.071 3.929 3 C -0.158 4.158 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.586 4.586 13 S 2.614 3.386 14 O -0.997 6.997 15 O -0.982 6.982 16 N -1.086 6.086 17 C 0.186 3.814 18 H 0.095 0.905 19 C -0.128 4.128 20 C -0.109 4.109 21 C -0.130 4.130 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.088 4.088 25 C -0.106 4.106 26 C 0.095 3.905 27 H 0.095 0.905 28 O -0.565 6.565 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.420 0.580 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.379 -9.826 19.883 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 C -0.216 4.216 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.196 1.196 12 C -0.719 4.719 13 S 2.711 3.289 14 O -0.987 6.987 15 O -0.972 6.972 16 N -0.844 5.844 17 C 0.079 3.921 18 H 0.113 0.887 19 C -0.130 4.130 20 C -0.128 4.128 21 C -0.148 4.148 22 C -0.128 4.128 23 C -0.132 4.132 24 C -0.088 4.088 25 C -0.143 4.143 26 C 0.034 3.966 27 H 0.113 0.887 28 O -0.373 6.373 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.254 0.746 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.126 0.874 44 H 0.112 0.888 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.586 -8.940 19.168 23.221 hybrid contribution 0.322 -0.735 -0.836 1.159 sum 9.909 -9.676 18.331 22.975 Atomic orbital electron populations 1.22206 0.97912 1.00382 1.01246 1.17908 0.92210 0.92164 0.90815 1.22192 0.99812 0.98338 1.01288 1.21234 1.31719 1.12297 0.90263 0.91795 1.25685 0.95163 0.95639 1.01675 1.69945 1.37160 1.23690 1.23897 0.85663 0.78770 0.78695 0.78788 1.19722 1.21350 1.19616 1.30508 1.12277 1.13328 1.15737 1.04761 0.73462 0.75012 0.75662 1.93490 1.31723 1.87157 1.86346 1.93514 1.78168 1.39792 1.85733 1.55110 1.13316 1.70915 1.45038 1.20360 0.80115 0.92503 0.99172 0.88748 1.20657 1.02183 0.95064 0.95129 1.20945 0.98989 0.93619 0.99243 1.21342 0.99817 0.95845 0.97805 1.21449 0.98622 1.00416 0.92341 1.20928 0.99854 0.91542 1.00839 1.20639 0.98410 0.95519 0.94273 1.21802 1.04208 0.90577 0.97691 1.22748 0.92695 0.88561 0.92609 0.88713 1.86619 1.51361 1.57414 1.41864 0.95203 0.90908 0.94235 0.94052 0.90982 0.95089 0.92928 0.84804 0.84753 0.74550 0.86227 0.84267 0.83224 0.83655 0.87442 0.88800 0.75365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.19 7.77 71.98 0.56 -7.63 16 2 C 0.07 3.50 0.52 -52.93 -0.03 3.48 16 3 C -0.16 -8.05 7.78 71.98 0.56 -7.49 16 4 C -0.52 -27.02 8.01 25.60 0.21 -26.81 16 5 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 6 C 0.02 0.95 5.15 84.66 0.44 1.38 16 7 N -0.91 -50.80 9.35 21.45 0.20 -50.60 16 8 Si 0.95 42.25 29.54 68.60 2.03 44.27 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 12 C -0.59 -23.01 4.97 71.98 0.36 -22.65 16 13 S 2.61 101.48 4.35 -56.49 -0.25 101.24 16 14 O -1.00 -44.43 15.69 -127.65 -2.00 -46.44 16 15 O -0.98 -43.27 15.43 -127.65 -1.97 -45.24 16 16 N -1.09 -31.57 4.63 -169.28 -0.78 -32.35 16 17 C 0.19 4.62 3.31 45.01 0.15 4.77 16 18 H 0.09 2.45 7.62 -2.38 -0.02 2.43 16 19 C -0.13 -2.83 5.78 -19.50 -0.11 -2.94 16 20 C -0.11 -2.43 10.04 22.30 0.22 -2.21 16 21 C -0.13 -2.36 10.05 22.24 0.22 -2.14 16 22 C -0.11 -1.63 10.05 22.24 0.22 -1.40 16 23 C -0.11 -1.67 10.04 22.30 0.22 -1.45 16 24 C -0.09 -1.55 6.14 -19.59 -0.12 -1.67 16 25 C -0.11 -1.48 6.52 30.52 0.20 -1.28 16 26 C 0.09 1.82 4.36 31.51 0.14 1.95 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 O -0.56 -12.36 12.67 -148.98 -1.89 -14.25 16 29 H 0.03 1.48 5.46 -2.39 -0.01 1.46 16 30 H 0.07 4.04 6.07 -2.38 -0.01 4.03 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 34 H 0.03 1.51 5.47 -2.39 -0.01 1.50 16 35 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.13 4.65 7.90 -2.39 -0.02 4.63 16 37 H 0.13 4.78 8.14 -2.39 -0.02 4.76 16 38 H 0.42 11.03 8.92 -96.75 -0.86 10.17 16 39 H 0.12 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 45 H 0.40 4.48 9.12 -74.06 -0.68 3.81 16 Total: -1.00 -73.34 367.18 -1.94 -75.28 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.51 Total: 34.18 kcal Atomic # 6 Polarization: -69.33 SS G_CDS: 3.24 Total: -66.09 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -0.58 Total: -82.95 kcal Atomic # 8 Polarization: -100.06 SS G_CDS: -5.86 Total: -105.92 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 101.48 SS G_CDS: -0.25 Total: 101.24 kcal Total: -73.34 -1.94 -75.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296355234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.614 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds