Wall clock time and date at job start Tue Mar 31 2020 22:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47230 * 2 1 4 4 C 1.50701 * 109.47205 * 240.00364 * 2 1 3 5 5 H 1.08002 * 120.00479 * 240.00222 * 4 2 1 6 6 C 1.37882 * 120.00152 * 59.99908 * 4 2 1 7 7 N 1.31523 * 119.99817 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00444 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46954 * 59.99579 * 8 6 4 10 10 H 1.48495 * 109.47461 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46586 * 299.99968 * 8 6 4 12 12 C 1.52997 * 109.47003 * 120.00498 * 2 1 3 13 13 S 1.81395 * 109.47169 * 299.99743 * 12 2 1 14 14 O 1.42103 * 110.54379 * 68.25083 * 13 12 2 15 15 O 1.42101 * 110.54366 * 291.50155 * 13 12 2 16 16 N 1.65600 * 104.45350 * 179.87605 * 13 12 2 17 17 C 1.46500 * 119.99915 * 64.02552 * 16 13 12 18 18 H 1.09001 * 110.27189 * 338.13993 * 17 16 13 19 19 C 1.51373 * 110.30103 * 216.06829 * 17 16 13 20 20 C 1.38494 * 130.39213 * 78.55720 * 19 17 16 21 21 C 1.38103 * 120.21191 * 180.19291 * 20 19 17 22 22 C 1.38249 * 119.93649 * 359.49822 * 21 20 19 23 23 C 1.38099 * 119.93476 * 0.24961 * 22 21 20 24 24 C 1.38218 * 109.75739 * 258.26930 * 19 17 16 25 25 C 1.51375 * 109.75686 * 359.97438 * 24 19 17 26 26 C 1.54342 * 110.30145 * 100.32195 * 17 16 13 27 27 H 1.09003 * 110.82243 * 334.34825 * 26 17 16 28 28 O 1.42901 * 110.82275 * 210.99416 * 26 17 16 29 29 H 1.09000 * 109.47166 * 300.00013 * 1 2 3 30 30 H 1.09000 * 109.47341 * 59.99735 * 1 2 3 31 31 H 1.08996 * 109.47240 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47022 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47175 * 300.00367 * 3 2 1 34 34 H 1.09006 * 109.46648 * 60.00454 * 3 2 1 35 35 H 0.96992 * 119.99649 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.46995 * 180.02562 * 12 2 1 37 37 H 1.08996 * 109.47225 * 59.99865 * 12 2 1 38 38 H 0.96999 * 120.00046 * 244.03780 * 16 13 12 39 39 H 1.07995 * 119.89251 * 359.94772 * 20 19 17 40 40 H 1.08002 * 120.02980 * 179.77130 * 21 20 19 41 41 H 1.08006 * 120.03116 * 180.27018 * 22 21 20 42 42 H 1.08004 * 119.89114 * 180.02562 * 23 22 21 43 43 H 1.08998 * 110.30004 * 101.74182 * 25 24 19 44 44 H 1.09001 * 110.30092 * 223.89217 * 25 24 19 45 45 H 0.96697 * 114.00205 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8259 -0.4203 -5.2205 11 1 3.8063 -1.1205 -4.0083 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1337 2.7303 14 8 0.0275 -0.0161 2.8528 15 8 2.0501 1.4086 2.8560 16 7 2.0506 -0.7427 3.9936 17 6 3.4998 -0.8197 4.1945 18 1 4.0224 -0.5979 3.2640 19 6 3.8876 -2.1928 4.7001 20 6 4.0344 -3.3908 4.0210 21 6 4.3980 -4.5358 4.7022 22 6 4.6265 -4.4847 6.0647 23 6 4.4856 -3.2900 6.7428 24 6 4.1161 -2.1417 6.0623 25 6 3.8980 -0.7307 6.5652 26 6 3.9393 0.1585 5.3045 27 1 3.2364 0.9871 5.3913 28 8 5.2623 0.6408 5.0619 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.7087 1.1614 -3.4843 36 1 3.1300 -0.7209 1.2494 37 1 1.6766 -1.7490 1.2491 38 1 1.4516 -1.2051 4.6003 39 1 3.8601 -3.4306 2.9559 40 1 4.5081 -5.4693 4.1702 41 1 4.9151 -5.3783 6.5983 42 1 4.6647 -3.2508 7.8072 43 1 2.9269 -0.6491 7.0534 44 1 4.6937 -0.4477 7.2543 45 1 5.5844 1.2595 5.7316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296355250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:12 Heat of formation + Delta-G solvation = -117.413370 kcal Electronic energy + Delta-G solvation = -28554.295064 eV Core-core repulsion = 24662.753973 eV Total energy + Delta-G solvation = -3891.541092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.40326 -38.33429 -38.14957 -38.04965 -36.95120 -36.15207 -33.71762 -33.64344 -31.78824 -29.12457 -28.36550 -27.70625 -27.49304 -27.22913 -23.48660 -21.98639 -21.95292 -21.44068 -20.31013 -18.95879 -18.69664 -17.94478 -17.45712 -16.96583 -16.73791 -16.61595 -16.43240 -16.20262 -15.59919 -15.40851 -15.02453 -14.75279 -14.52949 -14.43583 -14.34158 -13.91926 -13.86615 -13.62647 -13.32390 -13.10487 -13.05866 -12.87866 -12.81619 -12.72171 -12.54152 -12.43760 -12.19158 -12.18101 -12.06203 -11.99134 -11.70720 -11.57901 -11.40863 -11.09277 -10.77111 -10.45970 -10.41313 -9.77473 -9.53846 -8.03519 -6.22063 -0.70518 0.36407 0.47744 1.45123 1.45385 1.52699 1.78711 2.43836 2.75419 2.85671 3.05375 3.18841 3.28375 3.37216 3.54265 3.88104 3.95179 4.04555 4.06994 4.17489 4.18857 4.28638 4.53299 4.57728 4.62984 4.70072 4.74311 4.82386 4.84741 4.86002 4.95684 5.00173 5.06900 5.08407 5.20423 5.36809 5.49512 5.53529 5.61462 5.63788 5.66278 5.96365 5.98841 6.09189 6.10101 6.33234 6.81908 6.87822 7.46052 8.96353 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.003720 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.160346 B = 7524.586228 C = 8422.680061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.070 3.930 3 C -0.159 4.159 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.587 4.587 13 S 2.613 3.387 14 O -0.986 6.986 15 O -0.982 6.982 16 N -1.096 6.096 17 C 0.189 3.811 18 H 0.090 0.910 19 C -0.123 4.123 20 C -0.108 4.108 21 C -0.130 4.130 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.087 4.087 25 C -0.107 4.107 26 C 0.088 3.912 27 H 0.080 0.920 28 O -0.571 6.571 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.425 0.575 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 -8.374 20.911 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 C -0.217 4.217 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.546 5.546 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.720 4.720 13 S 2.711 3.289 14 O -0.977 6.977 15 O -0.972 6.972 16 N -0.855 5.855 17 C 0.082 3.918 18 H 0.108 0.892 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.088 4.088 25 C -0.144 4.144 26 C 0.027 3.973 27 H 0.098 0.902 28 O -0.380 6.380 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.261 0.739 39 H 0.140 0.860 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.579 -7.726 20.246 22.957 hybrid contribution 0.222 -0.514 -0.895 1.055 sum 7.801 -8.240 19.351 22.432 Atomic orbital electron populations 1.22205 0.97611 1.00529 1.01398 1.17917 0.92413 0.92137 0.90709 1.22199 0.99726 0.98338 1.01422 1.21245 1.31757 1.12333 0.90389 0.91978 1.25668 0.95142 0.95648 1.01622 1.69933 1.37076 1.23651 1.23942 0.85677 0.78714 0.78764 0.78858 1.19676 1.21219 1.19782 1.30466 1.12277 1.13544 1.15673 1.04833 0.73518 0.74904 0.75661 1.93520 1.31011 1.87012 1.86127 1.93526 1.78230 1.39691 1.85772 1.55421 1.13209 1.70864 1.45992 1.19918 0.79600 0.92353 0.99949 0.89170 1.20465 1.02579 0.93955 0.95530 1.20933 0.99140 0.91999 1.00574 1.21350 0.99929 0.98255 0.95276 1.21458 0.98506 0.98515 0.94348 1.20924 1.00175 0.91275 1.01014 1.20735 0.98259 0.96083 0.93748 1.21827 1.04647 0.90212 0.97703 1.22788 0.85171 0.95437 0.93924 0.90230 1.86440 1.30371 1.66578 1.54570 0.94902 0.90907 0.94095 0.94299 0.90938 0.94808 0.92880 0.85058 0.84417 0.73929 0.85964 0.83908 0.83101 0.83737 0.87798 0.87581 0.74835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.99 7.77 71.98 0.56 -7.43 16 2 C 0.07 3.43 0.52 -52.93 -0.03 3.40 16 3 C -0.16 -8.00 7.78 71.98 0.56 -7.44 16 4 C -0.52 -27.21 8.01 25.60 0.21 -27.00 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 1.00 5.15 84.65 0.44 1.43 16 7 N -0.91 -50.51 9.35 21.45 0.20 -50.31 16 8 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 C -0.59 -22.73 4.89 71.98 0.35 -22.37 16 13 S 2.61 95.37 4.41 -56.49 -0.25 95.12 16 14 O -0.99 -40.70 15.69 -127.65 -2.00 -42.71 16 15 O -0.98 -40.65 15.47 -127.65 -1.97 -42.63 16 16 N -1.10 -29.44 5.38 -169.71 -0.91 -30.35 16 17 C 0.19 4.92 3.05 44.91 0.14 5.06 16 18 H 0.09 2.59 7.16 -2.39 -0.02 2.57 16 19 C -0.12 -2.86 5.71 -19.59 -0.11 -2.97 16 20 C -0.11 -2.38 10.04 22.30 0.22 -2.16 16 21 C -0.13 -2.30 10.05 22.24 0.22 -2.07 16 22 C -0.11 -1.64 10.05 22.24 0.22 -1.41 16 23 C -0.12 -1.80 10.04 22.30 0.22 -1.58 16 24 C -0.09 -1.68 6.14 -19.59 -0.12 -1.80 16 25 C -0.11 -1.70 6.52 30.51 0.20 -1.50 16 26 C 0.09 1.96 4.15 31.50 0.13 2.09 16 27 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 28 O -0.57 -12.76 13.41 -148.98 -2.00 -14.76 16 29 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 30 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 34 H 0.03 1.61 5.47 -2.38 -0.01 1.60 16 35 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.13 4.65 7.46 -2.39 -0.02 4.63 16 37 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 38 H 0.42 9.57 8.83 -96.75 -0.85 8.72 16 39 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 42 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.11 1.20 8.11 -2.39 -0.02 1.18 16 45 H 0.40 4.83 9.12 -74.06 -0.68 4.15 16 Total: -1.00 -71.28 367.10 -2.20 -73.48 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.50 Total: 33.52 kcal Atomic # 6 Polarization: -68.98 SS G_CDS: 3.21 Total: -65.77 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -0.71 Total: -80.66 kcal Atomic # 8 Polarization: -94.12 SS G_CDS: -5.98 Total: -100.09 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 95.37 SS G_CDS: -0.25 Total: 95.12 kcal Total: -71.28 -2.20 -73.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296355250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.935 kcal (2) G-P(sol) polarization free energy of solvation -71.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds