Wall clock time and date at job start Tue Mar 31 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47516 * 2 1 4 4 C 1.50707 * 109.47204 * 239.99615 * 2 1 3 5 5 H 1.08001 * 119.99608 * 240.00589 * 4 2 1 6 6 C 1.37871 * 119.99869 * 60.00398 * 4 2 1 7 7 N 1.31520 * 119.99869 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47285 * 89.99841 * 8 6 4 10 10 H 1.48504 * 109.47506 * 210.00094 * 8 6 4 11 11 H 1.48502 * 109.47051 * 330.00121 * 8 6 4 12 12 C 1.53003 * 109.46517 * 119.99916 * 2 1 3 13 13 S 1.81394 * 109.47387 * 299.99470 * 12 2 1 14 14 O 1.42109 * 110.53807 * 68.37945 * 13 12 2 15 15 O 1.42098 * 110.54422 * 291.62974 * 13 12 2 16 16 N 1.65602 * 104.44973 * 179.97438 * 13 12 2 17 17 C 1.46498 * 119.99612 * 65.28269 * 16 13 12 18 18 C 1.53001 * 109.47089 * 164.71987 * 17 16 13 19 19 H 1.09005 * 110.82675 * 51.28874 * 18 17 16 20 20 C 1.54700 * 110.94089 * 287.53579 * 18 17 16 21 21 O 1.43771 * 102.78958 * 267.12561 * 20 18 17 22 22 C 1.36136 * 109.23626 * 332.26275 * 21 20 18 23 23 C 1.39285 * 129.88428 * 198.37566 * 22 21 20 24 24 C 1.37934 * 120.24180 * 180.96603 * 23 22 21 25 25 C 1.38287 * 120.34746 * 0.03882 * 24 23 22 26 26 C 1.38352 * 119.76709 * 359.81446 * 25 24 23 27 27 C 1.37741 * 119.97747 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47224 * 300.00735 * 1 2 3 29 29 H 1.09008 * 109.46641 * 59.99898 * 1 2 3 30 30 H 1.09001 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47371 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47114 * 299.99832 * 3 2 1 33 33 H 1.08998 * 109.47012 * 59.99397 * 3 2 1 34 34 H 0.97007 * 119.99442 * 180.02562 * 7 6 4 35 35 H 1.09009 * 109.46641 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47327 * 60.00523 * 12 2 1 37 37 H 0.97001 * 119.99942 * 244.99793 * 16 13 12 38 38 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 39 39 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 40 40 H 1.09005 * 110.74848 * 25.45414 * 20 18 17 41 41 H 1.09000 * 110.75206 * 148.80298 * 20 18 17 42 42 H 1.07996 * 119.88240 * 1.00865 * 23 22 21 43 43 H 1.08005 * 119.82605 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.11502 * 179.83387 * 25 24 23 45 45 H 1.08005 * 120.00847 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4868 -0.1416 -5.1123 11 1 3.6293 -1.7586 -3.7121 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0278 -0.0183 2.8543 15 8 2.0480 1.4100 2.8544 16 7 2.0528 -0.7409 3.9937 17 6 3.5008 -0.7933 4.2096 18 6 3.7878 -1.3247 5.6154 19 1 3.2503 -2.2558 5.7950 20 6 3.4373 -0.2670 6.6886 21 8 4.6884 0.4133 6.8855 22 6 5.7118 -0.4392 6.6039 23 6 7.0563 -0.3695 6.9609 24 6 7.9368 -1.3467 6.5457 25 6 7.4938 -2.4031 5.7711 26 6 6.1592 -2.4813 5.4148 27 6 5.2774 -1.5089 5.8320 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7083 1.1607 -3.4845 35 1 3.1300 -0.7217 1.2491 36 1 1.6766 -1.7490 1.2493 37 1 1.4555 -1.2151 4.5930 38 1 3.9545 -1.4547 3.4715 39 1 3.9200 0.2076 4.1070 40 1 2.6774 0.4214 6.3186 41 1 3.1092 -0.7466 7.6108 42 1 7.4105 0.4521 7.5656 43 1 8.9779 -1.2862 6.8267 44 1 8.1870 -3.1647 5.4459 45 1 5.8088 -3.3049 4.8103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296928335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:54 Heat of formation + Delta-G solvation = -78.669920 kcal Electronic energy + Delta-G solvation = -27857.791509 eV Core-core repulsion = 23967.930460 eV Total energy + Delta-G solvation = -3889.861049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48425 -37.67594 -36.61875 -36.29487 -35.91912 -35.30686 -32.43266 -31.68029 -30.30644 -29.42186 -26.65709 -25.88607 -25.72814 -25.23075 -23.29812 -22.33318 -21.27658 -19.63789 -18.84094 -17.66226 -17.24973 -16.94085 -16.49994 -16.09769 -15.93824 -15.62481 -15.31499 -14.76565 -14.53000 -14.33309 -14.11448 -13.60763 -13.48528 -13.07588 -13.02878 -12.79414 -12.54923 -12.51756 -12.14929 -12.11290 -11.70482 -11.68967 -11.46228 -11.17971 -11.08257 -11.03271 -10.98788 -10.92641 -10.72247 -10.40290 -10.29283 -10.13225 -9.68839 -9.66201 -9.32302 -9.17757 -8.69692 -8.41554 -8.39536 -6.04838 -4.16983 0.79723 1.02609 1.13565 3.03688 3.12524 3.24707 3.32127 3.33972 3.45875 4.06399 4.21384 4.28505 4.36393 4.49637 4.60408 4.76330 4.81278 4.90010 5.08218 5.12933 5.20407 5.24436 5.25043 5.33166 5.45003 5.53509 5.67296 5.71447 5.75862 5.91491 6.06469 6.16243 6.22535 6.35054 6.35538 6.68629 6.78174 6.88812 6.93484 6.98848 7.06601 7.30229 7.48999 7.66409 7.96885 8.08058 8.31397 8.81451 9.48554 10.96475 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003080 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.658559 B = 9089.285349 C =10259.730259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.581 4.581 13 S 2.593 3.407 14 O -0.964 6.964 15 O -0.962 6.962 16 N -1.132 6.132 17 C 0.127 3.873 18 C -0.082 4.082 19 H 0.106 0.894 20 C 0.053 3.947 21 O -0.300 6.300 22 C 0.112 3.888 23 C -0.142 4.142 24 C -0.083 4.083 25 C -0.152 4.152 26 C -0.063 4.063 27 C -0.171 4.171 28 H 0.027 0.973 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.411 0.589 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.630 -6.889 18.648 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.715 4.715 13 S 2.691 3.309 14 O -0.954 6.954 15 O -0.951 6.951 16 N -0.889 5.889 17 C 0.001 3.999 18 C -0.101 4.101 19 H 0.124 0.876 20 C -0.022 4.022 21 O -0.214 6.214 22 C 0.066 3.934 23 C -0.161 4.161 24 C -0.101 4.101 25 C -0.170 4.170 26 C -0.082 4.082 27 C -0.173 4.173 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.244 0.756 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.117 -5.637 18.582 21.452 hybrid contribution 0.378 -1.435 -0.961 1.768 sum 9.494 -7.072 17.621 21.229 Atomic orbital electron populations 1.22280 0.96914 1.00636 1.02351 1.17931 0.92821 0.92225 0.89035 1.22273 0.99721 0.97780 1.02372 1.20939 1.31767 1.12078 0.89407 0.92320 1.24940 0.94901 0.94968 0.98945 1.69807 1.36279 1.22559 1.23489 0.86531 0.79167 0.79376 0.82529 1.20653 1.21111 1.19957 1.30518 1.11236 1.12879 1.16859 1.05662 0.74386 0.75236 0.75635 1.93560 1.29403 1.86668 1.85762 1.93552 1.78083 1.38059 1.85456 1.55924 1.13729 1.71338 1.47940 1.21209 0.80630 1.02655 0.95422 1.21573 0.92724 1.00178 0.95654 0.87636 1.23982 0.85517 0.94740 0.98002 1.86876 1.13866 1.35684 1.84924 1.19650 0.90215 0.89297 0.94232 1.20280 0.89872 1.01583 1.04327 1.20901 0.99206 0.93332 0.96626 1.21053 0.95363 0.99564 1.00995 1.20377 0.92510 0.97313 0.97953 1.20609 0.95378 0.98425 1.02844 0.95372 0.88617 0.94464 0.94476 0.88643 0.95315 0.92730 0.86485 0.86230 0.75595 0.90913 0.89541 0.86849 0.90143 0.85420 0.85169 0.85398 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -4.02 7.77 37.15 0.29 -3.73 16 4 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -24.05 9.35 55.43 0.52 -23.53 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 C -0.58 -11.07 5.02 37.16 0.19 -10.89 16 13 S 2.59 46.42 4.49 -107.50 -0.48 45.94 16 14 O -0.96 -19.60 15.70 -57.54 -0.90 -20.50 16 15 O -0.96 -19.90 15.11 -57.54 -0.87 -20.77 16 16 N -1.13 -14.18 5.67 -10.61 -0.06 -14.24 16 17 C 0.13 1.47 5.54 -4.04 -0.02 1.45 16 18 C -0.08 -0.77 3.16 -90.41 -0.29 -1.06 16 19 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 20 C 0.05 0.51 7.50 38.05 0.29 0.80 16 21 O -0.30 -3.71 11.10 -20.17 -0.22 -3.93 16 22 C 0.11 1.28 7.04 -38.96 -0.27 1.00 16 23 C -0.14 -1.38 10.06 -39.30 -0.40 -1.78 16 24 C -0.08 -0.67 10.02 -39.67 -0.40 -1.07 16 25 C -0.15 -1.23 10.07 -39.52 -0.40 -1.63 16 26 C -0.06 -0.57 10.03 -39.72 -0.40 -0.97 16 27 C -0.17 -1.77 5.63 -104.10 -0.59 -2.35 16 28 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 29 H 0.10 2.53 6.07 -51.92 -0.32 2.21 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 33 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 36 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 37 H 0.41 4.07 8.62 -34.47 -0.30 3.78 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.16 7.66 -51.93 -0.40 0.76 16 40 H 0.11 1.12 7.77 -51.93 -0.40 0.72 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 43 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 44 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -32.88 367.96 -10.14 -43.02 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.49 Total: 6.78 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: -2.16 Total: -33.83 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.46 Total: -37.77 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -2.00 Total: -45.20 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 46.42 SS G_CDS: -0.48 Total: 45.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.88 -10.14 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296928335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.645 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds