Wall clock time and date at job start Tue Mar 31 2020 22:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.46843 * 2 1 4 4 C 1.50696 * 109.47429 * 239.99810 * 2 1 3 5 5 H 1.08000 * 120.00290 * 240.00044 * 4 2 1 6 6 C 1.37870 * 119.99993 * 59.99671 * 4 2 1 7 7 N 1.31515 * 120.00258 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47183 * 60.00346 * 8 6 4 10 10 H 1.48503 * 109.47086 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47288 * 300.00006 * 8 6 4 12 12 C 1.53005 * 109.47212 * 119.99283 * 2 1 3 13 13 S 1.81399 * 109.47445 * 300.00460 * 12 2 1 14 14 O 1.42104 * 110.53977 * 291.62365 * 13 12 2 15 15 O 1.42102 * 110.53976 * 68.37356 * 13 12 2 16 16 N 1.65593 * 104.45079 * 179.97438 * 13 12 2 17 17 C 1.46499 * 119.99833 * 64.99683 * 16 13 12 18 18 C 1.53007 * 109.47083 * 165.00158 * 17 16 13 19 19 H 1.09001 * 110.83273 * 305.70192 * 18 17 16 20 20 C 1.54709 * 110.94170 * 69.42233 * 18 17 16 21 21 O 1.43763 * 102.79525 * 92.79400 * 20 18 17 22 22 C 1.36140 * 109.28430 * 27.55212 * 21 20 18 23 23 C 1.39287 * 129.87197 * 161.46322 * 22 21 20 24 24 C 1.37938 * 120.23761 * 179.58237 * 23 22 21 25 25 C 1.38277 * 120.34982 * 0.02562 * 24 23 22 26 26 C 1.38348 * 119.77050 * 0.15393 * 25 24 23 27 27 C 1.37666 * 120.00379 * 0.02703 * 26 25 24 28 28 H 1.09002 * 109.47722 * 300.00207 * 1 2 3 29 29 H 1.09000 * 109.47250 * 60.00281 * 1 2 3 30 30 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46968 * 299.99892 * 3 2 1 33 33 H 1.09002 * 109.47398 * 59.99910 * 3 2 1 34 34 H 0.96999 * 120.00397 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46962 * 180.02562 * 12 2 1 36 36 H 1.09004 * 109.46832 * 60.00440 * 12 2 1 37 37 H 0.97001 * 120.00285 * 245.00211 * 16 13 12 38 38 H 1.08996 * 109.47829 * 284.99831 * 17 16 13 39 39 H 1.09000 * 109.47092 * 45.00291 * 17 16 13 40 40 H 1.09009 * 110.74718 * 211.12271 * 20 18 17 41 41 H 1.08996 * 110.75079 * 334.46812 * 20 18 17 42 42 H 1.07994 * 119.88161 * 359.55528 * 23 22 21 43 43 H 1.07995 * 119.81925 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.11525 * 180.13091 * 25 24 23 45 45 H 1.08004 * 120.01338 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4826 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.8259 -2.5205 -4.0076 10 1 1.8270 -0.4201 -5.2203 11 1 3.8063 -1.1210 -4.0080 12 6 2.0400 -0.7211 1.2494 13 16 1.4353 0.1340 2.7304 14 8 2.0479 1.4103 2.8543 15 8 0.0279 -0.0183 2.8544 16 7 2.0529 -0.7405 3.9937 17 6 3.5013 -0.7978 4.2060 18 6 3.7902 -1.3342 5.6095 19 1 3.2666 -0.7473 6.3642 20 6 3.4174 -2.8318 5.7167 21 8 4.6558 -3.4914 5.4034 22 6 5.6955 -2.6811 5.7437 23 6 7.0369 -2.9907 5.9550 24 6 7.9347 -1.9982 6.2891 25 6 7.5118 -0.6880 6.4178 26 6 6.1804 -0.3727 6.2133 27 6 5.2815 -1.3618 5.8833 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 0.7094 1.1616 -3.4844 35 1 3.1300 -0.7207 1.2496 36 1 1.6767 -1.7488 1.2494 37 1 1.4558 -1.2149 4.5931 38 1 3.9514 -1.4583 3.4650 39 1 3.9231 0.2022 4.1053 40 1 3.0940 -3.0778 6.7282 41 1 2.6473 -3.0910 4.9903 42 1 7.3753 -4.0117 5.8573 43 1 8.9732 -2.2460 6.4518 44 1 8.2184 0.0864 6.6775 45 1 5.8457 0.6493 6.3132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296928341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:56 Heat of formation + Delta-G solvation = -100.103170 kcal Electronic energy + Delta-G solvation = -27871.673073 eV Core-core repulsion = 23980.882608 eV Total energy + Delta-G solvation = -3890.790465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.21244 -38.36706 -38.14356 -38.12485 -37.01577 -36.78438 -33.64263 -33.25616 -30.99470 -30.13074 -28.32275 -27.69033 -27.26625 -26.78320 -23.99577 -23.02783 -22.01818 -21.36063 -20.29460 -18.88883 -18.23598 -17.90482 -17.82434 -17.33495 -16.94373 -16.85430 -16.59962 -16.44091 -15.74943 -15.21518 -15.05563 -14.80671 -14.66975 -14.42739 -14.33352 -14.23851 -13.83815 -13.53371 -13.38998 -13.31638 -13.04210 -12.91258 -12.87141 -12.80033 -12.51996 -12.48734 -12.43815 -12.17581 -12.16391 -11.96957 -11.78250 -11.65765 -11.56774 -11.37485 -10.73348 -10.41672 -10.39383 -9.85082 -9.11175 -8.03550 -6.22201 -0.63814 0.33342 0.44498 1.44748 1.45156 1.52343 1.84942 2.33707 2.43712 2.76991 2.83434 3.18507 3.28826 3.34225 3.54875 3.73703 3.93676 3.98982 4.15877 4.18049 4.24730 4.34547 4.46048 4.51787 4.55220 4.60213 4.62118 4.70638 4.77632 4.85998 4.86992 4.96330 5.00220 5.08714 5.11370 5.38474 5.41161 5.48837 5.50984 5.58668 5.64080 5.70684 5.97929 6.06410 6.11766 6.24943 6.34060 6.82311 7.46134 8.96046 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.003117 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.711933 B = 8981.463218 C = 9855.686489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 C -0.159 4.159 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.589 4.589 13 S 2.618 3.382 14 O -0.989 6.989 15 O -0.988 6.988 16 N -1.111 6.111 17 C 0.122 3.878 18 C -0.077 4.077 19 H 0.122 0.878 20 C 0.047 3.953 21 O -0.321 6.321 22 C 0.086 3.914 23 C -0.155 4.155 24 C -0.082 4.082 25 C -0.152 4.152 26 C -0.076 4.076 27 C -0.183 4.183 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.425 0.575 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.136 0.864 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.036 -6.609 20.469 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 C -0.217 4.217 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.721 4.721 13 S 2.715 3.285 14 O -0.978 6.978 15 O -0.979 6.979 16 N -0.873 5.873 17 C -0.004 4.004 18 C -0.097 4.097 19 H 0.140 0.860 20 C -0.027 4.027 21 O -0.236 6.236 22 C 0.041 3.959 23 C -0.174 4.174 24 C -0.100 4.100 25 C -0.170 4.170 26 C -0.094 4.094 27 C -0.185 4.185 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.262 0.738 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.138 0.862 42 H 0.154 0.846 43 H 0.175 0.825 44 H 0.169 0.831 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.504 -5.837 20.225 23.526 hybrid contribution 0.040 -0.853 -1.187 1.463 sum 10.544 -6.690 19.038 22.768 Atomic orbital electron populations 1.22212 0.97672 1.00533 1.01417 1.17909 0.92383 0.92137 0.90814 1.22203 0.99752 0.98351 1.01420 1.21270 1.31735 1.12328 0.90523 0.92053 1.25659 0.95166 0.95650 1.01618 1.69931 1.37118 1.23615 1.23917 0.85692 0.78722 0.78754 0.78923 1.19742 1.21226 1.19787 1.30474 1.12374 1.13513 1.15729 1.04602 0.73447 0.74777 0.75645 1.93506 1.78481 1.39952 1.85905 1.93517 1.31172 1.87009 1.86169 1.55358 1.14639 1.70870 1.46419 1.21345 0.79284 1.02484 0.97257 1.21543 0.92721 0.97952 0.97466 0.85977 1.24190 0.85301 0.89253 1.03985 1.86814 1.14534 1.43014 1.79215 1.19955 0.90488 0.89400 0.96101 1.20590 0.89690 1.01663 1.05452 1.21264 1.00229 0.92110 0.96398 1.21415 0.95500 0.97485 1.02618 1.20674 0.92908 0.99034 0.96741 1.20750 0.95762 0.94090 1.07889 0.94749 0.91050 0.94089 0.94227 0.91082 0.94710 0.92898 0.84914 0.84441 0.73807 0.90955 0.89990 0.88055 0.86167 0.84608 0.82498 0.83064 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.93 7.77 71.98 0.56 -7.37 16 2 C 0.07 3.34 0.52 -52.93 -0.03 3.31 16 3 C -0.16 -7.88 7.77 71.98 0.56 -7.32 16 4 C -0.52 -27.11 8.01 25.60 0.21 -26.90 16 5 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 6 C 0.02 0.99 5.15 84.65 0.44 1.42 16 7 N -0.91 -50.29 9.35 21.44 0.20 -50.09 16 8 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 C -0.59 -21.90 5.01 71.98 0.36 -21.54 16 13 S 2.62 90.51 4.49 -56.49 -0.25 90.25 16 14 O -0.99 -39.59 15.12 -127.65 -1.93 -41.52 16 15 O -0.99 -39.17 15.70 -127.65 -2.00 -41.18 16 16 N -1.11 -25.83 5.66 -187.49 -1.06 -26.89 16 17 C 0.12 2.63 5.56 86.38 0.48 3.11 16 18 C -0.08 -1.32 3.22 -10.65 -0.03 -1.36 16 19 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 20 C 0.05 0.74 7.35 72.56 0.53 1.28 16 21 O -0.32 -7.05 11.10 -95.15 -1.06 -8.11 16 22 C 0.09 1.81 7.04 22.70 0.16 1.97 16 23 C -0.16 -2.76 10.06 22.45 0.23 -2.54 16 24 C -0.08 -1.15 10.02 22.21 0.22 -0.92 16 25 C -0.15 -2.15 10.07 22.31 0.22 -1.92 16 26 C -0.08 -1.27 10.03 22.16 0.22 -1.05 16 27 C -0.18 -3.54 5.63 -19.52 -0.11 -3.65 16 28 H 0.03 1.61 5.46 -2.39 -0.01 1.59 16 29 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 30 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 33 H 0.03 1.63 5.46 -2.39 -0.01 1.61 16 34 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.13 4.46 8.14 -2.39 -0.02 4.44 16 36 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 37 H 0.43 7.51 8.09 -96.75 -0.78 6.73 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.89 7.70 -2.39 -0.02 1.88 16 40 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.12 1.62 7.37 -2.39 -0.02 1.60 16 42 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 44 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 45 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -70.14 366.99 0.16 -69.98 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.22 Total: 26.74 kcal Atomic # 6 Polarization: -67.51 SS G_CDS: 4.02 Total: -63.49 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -0.86 Total: -76.98 kcal Atomic # 8 Polarization: -85.81 SS G_CDS: -4.99 Total: -90.80 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 90.51 SS G_CDS: -0.25 Total: 90.25 kcal Total: -70.14 0.16 -69.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296928341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.123 kcal (2) G-P(sol) polarization free energy of solvation -70.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds