Wall clock time and date at job start Tue Mar 31 2020 22:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00109 * 2 1 4 4 N 1.46500 * 109.47189 * 125.00063 * 3 2 1 5 5 C 1.46501 * 119.99746 * 275.00065 * 4 3 2 6 6 C 1.50707 * 109.46904 * 274.99845 * 5 4 3 7 7 H 1.08000 * 119.99690 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99990 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99836 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99952 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47105 * 90.00030 * 10 8 6 12 12 H 1.48498 * 109.47136 * 209.99872 * 10 8 6 13 13 H 1.48498 * 109.47156 * 330.00058 * 10 8 6 14 14 S 1.65593 * 120.00082 * 94.99950 * 4 3 2 15 15 O 1.42100 * 104.27954 * 333.92553 * 14 4 3 16 16 O 1.42110 * 104.27550 * 206.07108 * 14 4 3 17 17 C 1.81400 * 104.45297 * 90.00005 * 14 4 3 18 18 C 1.52995 * 109.47237 * 179.97438 * 17 14 4 19 19 O 1.42903 * 109.46972 * 179.97438 * 18 17 14 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.08004 * 120.00376 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99951 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99532 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.46800 * 4.99405 * 3 2 1 31 31 H 1.09003 * 109.46654 * 245.00094 * 3 2 1 32 32 H 1.08999 * 109.47050 * 34.99566 * 5 4 3 33 33 H 1.08997 * 109.47416 * 155.00164 * 5 4 3 34 34 H 0.97006 * 119.99319 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46607 * 59.99749 * 17 14 4 36 36 H 1.09005 * 109.46800 * 300.00105 * 17 14 4 37 37 H 1.09005 * 109.47112 * 59.99967 * 18 17 14 38 38 H 1.08993 * 109.47202 * 300.00070 * 18 17 14 39 39 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 40 40 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5992 3.2646 2.5449 7 1 2.9547 3.8413 1.7038 8 6 2.2099 3.9030 3.7033 9 7 1.7765 3.2006 4.7273 10 14 2.2969 5.7654 3.8179 11 1 1.0115 6.3502 3.3583 12 1 2.5462 6.1636 5.2266 13 1 3.4019 6.2631 2.9598 14 16 4.5712 0.8759 0.9173 15 8 4.5315 -0.0150 -0.1890 16 8 4.9847 0.4306 2.2019 17 6 5.4291 2.4099 0.4687 18 6 6.9136 2.1168 0.2426 19 8 7.5892 3.3252 -0.1114 20 6 8.9891 3.1610 -0.3462 21 6 9.5968 4.4911 -0.7107 22 6 10.0950 5.3177 0.2790 23 6 10.6529 6.5375 -0.0553 24 6 10.7131 6.9304 -1.3793 25 6 10.2101 6.1061 -2.3684 26 6 9.6564 4.8843 -2.0345 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1315 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4983 1.4372 2.5981 33 1 3.1612 1.3205 3.2221 34 1 1.5030 3.6498 5.5424 35 1 5.3211 3.1356 1.2749 36 1 4.9949 2.8150 -0.4454 37 1 7.0219 1.3909 -0.5634 38 1 7.3474 1.7119 1.1569 39 1 9.1402 2.4566 -1.1643 40 1 9.4665 2.7780 0.5558 41 1 10.0483 5.0105 1.3134 42 1 11.0417 7.1835 0.7179 43 1 11.1493 7.8833 -1.6405 44 1 10.2531 6.4150 -3.4024 45 1 9.2679 4.2381 -2.8078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297030085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:29 Heat of formation + Delta-G solvation = -69.902910 kcal Electronic energy + Delta-G solvation = -26839.295789 eV Core-core repulsion = 22949.814906 eV Total energy + Delta-G solvation = -3889.480883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.57072 -37.83211 -36.68863 -36.35055 -35.40624 -33.22444 -32.76702 -31.91124 -31.10889 -30.89446 -27.51228 -26.16025 -24.95617 -23.41896 -22.79288 -22.11981 -21.52515 -19.68135 -18.28566 -17.31633 -17.11099 -16.61902 -16.49850 -16.35046 -15.82248 -15.69600 -15.30207 -15.09497 -14.59965 -14.46368 -14.23942 -13.70111 -13.61704 -13.22778 -13.03353 -12.94685 -12.72284 -12.48994 -12.16300 -11.78488 -11.68492 -11.62625 -11.55046 -11.28959 -11.21694 -11.20791 -11.17861 -10.89730 -10.76700 -10.56615 -10.42937 -10.06488 -9.81458 -9.76872 -9.12240 -9.05201 -9.04024 -8.51916 -8.10372 -6.13756 -4.21704 0.73519 1.06797 1.20034 2.61594 3.24167 3.25589 3.31982 3.34454 3.44111 3.90146 4.32681 4.36946 4.59709 4.60700 4.65130 4.78694 4.84951 4.94827 4.96740 5.06770 5.14130 5.17842 5.20500 5.31283 5.32946 5.43654 5.47454 5.65841 5.68270 5.74999 5.82994 6.02822 6.13920 6.22802 6.28817 6.31198 6.38855 6.45023 6.76717 6.99812 7.02145 7.07852 7.35279 7.40720 7.60684 7.82475 8.10769 8.83178 9.45330 10.93957 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.003219 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.707408 B = 8694.985443 C =10534.729609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 C 0.156 3.844 4 N -0.976 5.976 5 C 0.243 3.757 6 C -0.549 4.549 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.886 5.886 10 Si 0.892 3.108 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.272 1.272 14 S 2.615 3.385 15 O -0.972 6.972 16 O -0.950 6.950 17 C -0.639 4.639 18 C 0.078 3.922 19 O -0.369 6.369 20 C 0.095 3.905 21 C -0.089 4.089 22 C -0.097 4.097 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.099 4.099 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.098 1.722 -12.658 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.178 4.178 3 C 0.030 3.970 4 N -0.815 5.815 5 C 0.121 3.879 6 C -0.589 4.589 7 H 0.081 0.919 8 C -0.137 4.137 9 N -0.524 5.524 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.197 1.197 14 S 2.705 3.295 15 O -0.962 6.962 16 O -0.940 6.940 17 C -0.765 4.765 18 C 0.000 4.000 19 O -0.289 6.289 20 C 0.019 3.981 21 C -0.089 4.089 22 C -0.116 4.116 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.117 4.117 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.169 0.831 36 H 0.151 0.849 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.294 1.075 -12.362 18.185 hybrid contribution -0.021 1.718 0.102 1.721 sum 13.273 2.793 -12.260 18.284 Atomic orbital electron populations 1.23772 0.95819 1.01540 1.01574 1.23431 0.96246 0.99351 0.98770 1.20211 0.93168 0.95636 0.87973 1.57364 1.23636 1.82732 1.17725 1.19273 0.97342 0.94637 0.76611 1.21591 1.45377 0.92053 0.99849 0.91943 1.24941 0.94794 0.98482 0.95469 1.69939 1.42712 1.35663 1.04092 0.86588 0.78552 0.85367 0.77507 1.20519 1.21025 1.19710 1.04746 0.74547 0.76087 0.74082 1.93537 1.86359 1.60551 1.55776 1.93580 1.82070 1.78917 1.39471 1.31008 1.05126 1.26670 1.13710 1.22062 0.90216 0.87802 0.99943 1.88059 1.19516 1.31276 1.90033 1.21388 0.82269 0.94116 1.00323 1.19622 0.99370 0.96195 0.93713 1.21137 0.97208 0.93973 0.99235 1.21170 0.99995 0.96491 0.96519 1.21203 0.99526 0.99565 0.93144 1.21147 0.99157 0.94506 0.99499 1.21090 0.98310 0.96585 0.95736 0.88918 0.88438 0.87403 0.89493 0.90776 0.93941 0.92674 0.92508 0.83109 0.84942 0.92153 0.91770 0.92154 0.92012 0.85704 0.85850 0.86051 0.85921 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 14.32 29.01 0.42 -2.34 16 2 C -0.16 -2.59 9.84 -36.03 -0.35 -2.94 16 3 C 0.16 2.67 5.69 -5.19 -0.03 2.64 16 4 N -0.98 -19.55 2.68 -116.95 -0.31 -19.86 16 5 C 0.24 5.93 5.41 -5.19 -0.03 5.91 16 6 C -0.55 -14.18 9.38 -34.44 -0.32 -14.50 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 10 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 14 S 2.61 48.68 5.37 -107.50 -0.58 48.11 16 15 O -0.97 -18.33 16.99 -57.54 -0.98 -19.31 16 16 O -0.95 -20.92 16.53 -57.54 -0.95 -21.87 16 17 C -0.64 -10.24 6.55 37.16 0.24 -10.00 16 18 C 0.08 1.11 5.95 37.16 0.22 1.33 16 19 O -0.37 -5.47 10.33 -35.23 -0.36 -5.83 16 20 C 0.10 1.10 6.06 36.01 0.22 1.31 16 21 C -0.09 -1.03 5.51 -104.62 -0.58 -1.60 16 22 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.13 -1.17 10.05 -39.58 -0.40 -1.56 16 26 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 27 H 0.09 1.18 8.06 -52.48 -0.42 0.76 16 28 H 0.10 1.36 7.84 -52.49 -0.41 0.95 16 29 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.09 1.47 7.76 -51.93 -0.40 1.07 16 31 H 0.07 1.09 7.61 -51.93 -0.40 0.69 16 32 H 0.04 1.09 8.11 -51.93 -0.42 0.67 16 33 H 0.06 1.48 6.82 -51.93 -0.35 1.13 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.15 2.64 8.14 -51.92 -0.42 2.21 16 36 H 0.13 1.89 8.14 -51.92 -0.42 1.47 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -32.61 399.16 -10.75 -43.35 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.02 Total: 4.16 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -2.27 Total: -25.99 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.42 Total: -44.29 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -2.29 Total: -47.01 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 48.68 SS G_CDS: -0.58 Total: 48.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.61 -10.75 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297030085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.551 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds