Wall clock time and date at job start Tue Mar 31 2020 22:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00109 * 2 1 4 4 N 1.46500 * 109.47189 * 125.00063 * 3 2 1 5 5 C 1.46501 * 119.99746 * 275.00065 * 4 3 2 6 6 C 1.50707 * 109.46904 * 274.99845 * 5 4 3 7 7 H 1.08000 * 119.99690 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99990 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99836 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99952 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47105 * 90.00030 * 10 8 6 12 12 H 1.48498 * 109.47136 * 209.99872 * 10 8 6 13 13 H 1.48498 * 109.47156 * 330.00058 * 10 8 6 14 14 S 1.65593 * 120.00082 * 94.99950 * 4 3 2 15 15 O 1.42100 * 104.27954 * 333.92553 * 14 4 3 16 16 O 1.42110 * 104.27550 * 206.07108 * 14 4 3 17 17 C 1.81400 * 104.45297 * 90.00005 * 14 4 3 18 18 C 1.52995 * 109.47237 * 179.97438 * 17 14 4 19 19 O 1.42903 * 109.46972 * 179.97438 * 18 17 14 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.08004 * 120.00376 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99951 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99532 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.46800 * 4.99405 * 3 2 1 31 31 H 1.09003 * 109.46654 * 245.00094 * 3 2 1 32 32 H 1.08999 * 109.47050 * 34.99566 * 5 4 3 33 33 H 1.08997 * 109.47416 * 155.00164 * 5 4 3 34 34 H 0.97006 * 119.99319 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46607 * 59.99749 * 17 14 4 36 36 H 1.09005 * 109.46800 * 300.00105 * 17 14 4 37 37 H 1.09005 * 109.47112 * 59.99967 * 18 17 14 38 38 H 1.08993 * 109.47202 * 300.00070 * 18 17 14 39 39 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 40 40 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5992 3.2646 2.5449 7 1 2.9547 3.8413 1.7038 8 6 2.2099 3.9030 3.7033 9 7 1.7765 3.2006 4.7273 10 14 2.2969 5.7654 3.8179 11 1 1.0115 6.3502 3.3583 12 1 2.5462 6.1636 5.2266 13 1 3.4019 6.2631 2.9598 14 16 4.5712 0.8759 0.9173 15 8 4.5315 -0.0150 -0.1890 16 8 4.9847 0.4306 2.2019 17 6 5.4291 2.4099 0.4687 18 6 6.9136 2.1168 0.2426 19 8 7.5892 3.3252 -0.1114 20 6 8.9891 3.1610 -0.3462 21 6 9.5968 4.4911 -0.7107 22 6 10.0950 5.3177 0.2790 23 6 10.6529 6.5375 -0.0553 24 6 10.7131 6.9304 -1.3793 25 6 10.2101 6.1061 -2.3684 26 6 9.6564 4.8843 -2.0345 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1315 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4983 1.4372 2.5981 33 1 3.1612 1.3205 3.2221 34 1 1.5030 3.6498 5.5424 35 1 5.3211 3.1356 1.2749 36 1 4.9949 2.8150 -0.4454 37 1 7.0219 1.3909 -0.5634 38 1 7.3474 1.7119 1.1569 39 1 9.1402 2.4566 -1.1643 40 1 9.4665 2.7780 0.5558 41 1 10.0483 5.0105 1.3134 42 1 11.0417 7.1835 0.7179 43 1 11.1493 7.8833 -1.6405 44 1 10.2531 6.4150 -3.4024 45 1 9.2679 4.2381 -2.8078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297030085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:28 Heat of formation + Delta-G solvation = -89.830322 kcal Electronic energy + Delta-G solvation = -26840.159906 eV Core-core repulsion = 22949.814906 eV Total energy + Delta-G solvation = -3890.345001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.34314 -38.81276 -38.23701 -37.91953 -36.98981 -35.00008 -33.71959 -33.53384 -31.93110 -31.82312 -29.33252 -27.00388 -26.53368 -24.76979 -23.80439 -23.51360 -22.28587 -20.97864 -19.77891 -18.71745 -18.48095 -18.02469 -17.70773 -17.58914 -17.16831 -16.88506 -16.44437 -16.29025 -16.01453 -15.76333 -15.18688 -15.16244 -14.61854 -14.41616 -14.21651 -14.19985 -13.80559 -13.74569 -13.56882 -13.40330 -13.20055 -13.04699 -12.93751 -12.70139 -12.66320 -12.44909 -12.38194 -12.29484 -12.09548 -11.93852 -11.89464 -11.74732 -11.60052 -10.76845 -10.58295 -10.29271 -9.85573 -9.82986 -9.75038 -8.17697 -6.32330 -0.74249 0.30069 0.46706 1.32718 1.42659 1.44298 1.53713 1.86667 2.40010 2.46735 2.85004 3.13001 3.16179 3.21057 3.52343 3.75577 3.88118 3.91910 3.94579 4.09529 4.12285 4.18108 4.26565 4.29289 4.37709 4.41875 4.45680 4.61375 4.72266 4.73491 4.83107 4.96831 5.04043 5.10295 5.12469 5.32818 5.46101 5.51440 5.57723 5.63007 5.71829 5.77805 5.81130 6.00853 6.01816 6.07734 6.08839 6.80997 7.38684 8.90314 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.003219 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.707408 B = 8694.985443 C =10534.729609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.186 4.186 3 C 0.148 3.852 4 N -0.984 5.984 5 C 0.260 3.740 6 C -0.552 4.552 7 H 0.075 0.925 8 C 0.014 3.986 9 N -0.926 5.926 10 Si 0.956 3.044 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.264 1.264 14 S 2.624 3.376 15 O -0.974 6.974 16 O -0.991 6.991 17 C -0.622 4.622 18 C 0.070 3.930 19 O -0.390 6.390 20 C 0.089 3.911 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.112 4.112 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.266 0.734 35 H 0.137 0.863 36 H 0.155 0.845 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.822 3.319 -14.760 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.206 4.206 3 C 0.023 3.977 4 N -0.821 5.821 5 C 0.137 3.863 6 C -0.591 4.591 7 H 0.093 0.907 8 C -0.186 4.186 9 N -0.565 5.565 10 Si 0.781 3.219 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.189 1.189 14 S 2.718 3.282 15 O -0.964 6.964 16 O -0.982 6.982 17 C -0.752 4.752 18 C -0.008 4.008 19 O -0.310 6.310 20 C 0.013 3.987 21 C -0.111 4.111 22 C -0.136 4.136 23 C -0.151 4.151 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.130 4.130 27 H 0.131 0.869 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.156 0.844 36 H 0.173 0.827 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.144 0.856 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.002 2.638 -14.488 20.320 hybrid contribution -0.199 1.211 0.672 1.399 sum 13.803 3.848 -13.817 19.906 Atomic orbital electron populations 1.24015 0.95308 1.02839 0.98796 1.23417 0.96997 0.98837 1.01352 1.20456 0.93264 0.96119 0.87815 1.57249 1.24947 1.82912 1.16999 1.18746 0.95476 0.93993 0.78129 1.21942 1.44327 0.92759 1.00048 0.90716 1.25787 0.94636 1.02957 0.95264 1.70069 1.44155 1.37539 1.04754 0.85581 0.78935 0.79999 0.77361 1.19630 1.21185 1.18868 1.04307 0.74016 0.76650 0.73187 1.93526 1.86311 1.61386 1.55207 1.93530 1.82541 1.80395 1.41707 1.30728 1.06558 1.23683 1.14188 1.22174 0.88886 0.88439 1.01335 1.88006 1.21305 1.31430 1.90233 1.21612 0.80614 0.94921 1.01543 1.19783 1.00295 0.96544 0.94458 1.21338 0.98027 0.94791 0.99423 1.21466 0.99732 0.96299 0.97581 1.21572 0.98904 1.00490 0.92807 1.21497 0.98397 0.94049 1.00861 1.21342 0.98591 0.97404 0.95641 0.86908 0.87815 0.87972 0.89506 0.88215 0.96035 0.95917 0.92508 0.84444 0.82674 0.89687 0.91319 0.90217 0.91165 0.85638 0.84136 0.83584 0.83614 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.77 14.32 67.78 0.97 -3.80 16 2 C -0.19 -5.99 9.84 25.65 0.25 -5.74 16 3 C 0.15 4.96 5.69 85.63 0.49 5.45 16 4 N -0.98 -39.59 2.68 -523.91 -1.41 -40.99 16 5 C 0.26 13.05 5.41 85.63 0.46 13.52 16 6 C -0.55 -28.58 9.38 25.60 0.24 -28.34 16 7 H 0.07 3.60 7.81 -2.91 -0.02 3.58 16 8 C 0.01 0.73 5.46 84.65 0.46 1.19 16 9 N -0.93 -53.63 13.29 21.45 0.28 -53.35 16 10 Si 0.96 42.18 29.54 68.60 2.03 44.21 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 14 S 2.62 97.41 5.37 -56.49 -0.30 97.11 16 15 O -0.97 -35.84 16.99 -127.65 -2.17 -38.01 16 16 O -0.99 -44.91 16.53 -127.65 -2.11 -47.02 16 17 C -0.62 -19.17 6.55 71.98 0.47 -18.70 16 18 C 0.07 1.89 5.95 71.98 0.43 2.31 16 19 O -0.39 -10.98 10.33 -148.98 -1.54 -12.52 16 20 C 0.09 1.93 6.06 71.24 0.43 2.36 16 21 C -0.11 -2.44 5.51 -19.86 -0.11 -2.55 16 22 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 23 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 24 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 25 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 26 C -0.11 -2.16 9.70 22.27 0.22 -1.94 16 27 H 0.11 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.10 2.75 7.84 -2.91 -0.02 2.72 16 29 H 0.10 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.09 2.87 7.76 -2.39 -0.02 2.85 16 31 H 0.10 2.76 7.61 -2.39 -0.02 2.74 16 32 H 0.02 1.15 8.11 -2.39 -0.02 1.13 16 33 H 0.02 1.28 6.82 -2.39 -0.02 1.27 16 34 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 35 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 36 H 0.16 4.06 8.14 -2.39 -0.02 4.04 16 37 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 1.37 8.08 -2.38 -0.02 1.35 16 40 H 0.07 1.35 8.09 -2.39 -0.02 1.34 16 41 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 44 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -70.38 399.16 0.94 -69.44 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.95 Total: 25.43 kcal Atomic # 6 Polarization: -49.51 SS G_CDS: 5.20 Total: -44.31 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -1.12 Total: -94.34 kcal Atomic # 8 Polarization: -91.73 SS G_CDS: -5.82 Total: -97.54 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 97.41 SS G_CDS: -0.30 Total: 97.11 kcal Total: -70.38 0.94 -69.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297030085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.392 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds