Wall clock time and date at job start Tue Mar 31 2020 22:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47036 * 2 1 4 4 N 1.46498 * 109.46949 * 179.97438 * 3 2 1 5 5 C 1.36874 * 119.99708 * 279.53077 * 4 3 2 6 6 H 1.07995 * 120.00153 * 40.14135 * 5 4 3 7 7 C 1.39051 * 119.99901 * 220.13413 * 5 4 3 8 8 N 1.31363 * 120.00014 * 20.48259 * 7 5 4 9 9 Si 1.86801 * 120.00002 * 200.48359 * 7 5 4 10 10 H 1.48504 * 109.47182 * 64.99914 * 9 7 5 11 11 H 1.48504 * 109.46956 * 184.99799 * 9 7 5 12 12 H 1.48498 * 109.47139 * 304.99814 * 9 7 5 13 13 C 1.34775 * 119.99996 * 99.53579 * 4 3 2 14 14 O 1.21599 * 119.99839 * 186.85613 * 13 4 3 15 15 C 1.47719 * 120.00110 * 6.85357 * 13 4 3 16 16 C 1.39647 * 120.15224 * 151.24065 * 15 13 4 17 17 C 1.37938 * 119.84912 * 180.02562 * 16 15 13 18 18 C 1.38376 * 120.15147 * 359.97438 * 17 16 15 19 19 S 1.76194 * 119.84564 * 179.97438 * 18 17 16 20 20 O 1.42103 * 104.27990 * 333.92673 * 19 18 17 21 21 O 1.42106 * 104.27750 * 206.07383 * 19 18 17 22 22 C 1.81401 * 104.45178 * 90.00186 * 19 18 17 23 23 C 1.52998 * 109.47336 * 179.97438 * 22 19 18 24 24 C 1.53002 * 109.47135 * 59.99737 * 22 19 18 25 25 C 1.38372 * 120.30303 * 0.25994 * 18 17 16 26 26 C 1.37942 * 120.15209 * 359.48235 * 25 18 17 27 27 H 1.08993 * 109.47567 * 300.00431 * 1 2 3 28 28 H 1.09000 * 109.46588 * 60.00229 * 1 2 3 29 29 H 1.09003 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47567 * 239.99569 * 2 1 3 31 31 H 1.09009 * 109.46773 * 119.99607 * 2 1 3 32 32 H 1.08997 * 109.47287 * 59.99920 * 3 2 1 33 33 H 1.08997 * 109.47051 * 299.99853 * 3 2 1 34 34 H 0.97002 * 119.99969 * 184.93906 * 8 7 5 35 35 H 1.08007 * 120.07511 * 359.97438 * 16 15 13 36 36 H 1.08001 * 119.92523 * 179.97438 * 17 16 15 37 37 H 1.08999 * 109.46921 * 300.00227 * 22 19 18 38 38 H 1.08994 * 109.47211 * 300.00253 * 23 22 19 39 39 H 1.09008 * 109.46624 * 60.00024 * 23 22 19 40 40 H 1.08996 * 109.47421 * 179.97438 * 23 22 19 41 41 H 1.09005 * 109.46902 * 300.00379 * 24 22 19 42 42 H 1.09002 * 109.47231 * 59.99799 * 24 22 19 43 43 H 1.08990 * 109.47551 * 180.02562 * 24 22 19 44 44 H 1.08001 * 119.92209 * 179.74351 * 25 18 17 45 45 H 1.08001 * 120.07864 * 180.26128 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1888 1.2464 1.1700 6 1 3.8393 0.5153 1.8838 7 6 5.3336 1.9884 1.4387 8 7 5.5439 3.1225 0.8100 9 14 6.5726 1.3726 2.6937 10 1 7.1837 0.1094 2.2074 11 1 7.6334 2.3942 2.8846 12 1 5.8859 1.1245 3.9868 13 6 4.1793 1.6357 -1.1502 14 8 5.3888 1.5123 -1.1742 15 6 3.4492 1.9972 -2.3824 16 6 4.0762 2.7576 -3.3717 17 6 3.3884 3.0921 -4.5196 18 6 2.0802 2.6755 -4.6923 19 16 1.2089 3.1080 -6.1614 20 8 1.8363 4.3046 -6.6017 21 8 -0.1583 3.0975 -5.7740 22 6 1.5554 1.7476 -7.3103 23 6 0.8448 2.0091 -8.6397 24 6 1.0495 0.4334 -6.7120 25 6 1.4512 1.9259 -3.7139 26 6 2.1290 1.5798 -2.5635 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 6.3751 3.6043 0.9437 35 1 5.0971 3.0838 -3.2380 36 1 3.8720 3.6805 -5.2853 37 1 2.6301 1.6798 -7.4795 38 1 -0.2298 2.0767 -8.4701 39 1 1.2049 2.9455 -9.0661 40 1 1.0533 1.1920 -9.3302 41 1 1.5555 0.2469 -5.7647 42 1 -0.0251 0.5012 -6.5427 43 1 1.2581 -0.3841 -7.4021 44 1 0.4286 1.6075 -3.8533 45 1 1.6383 0.9911 -1.8025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299056196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:01 Heat of formation + Delta-G solvation = -71.397207 kcal Electronic energy + Delta-G solvation = -28236.619505 eV Core-core repulsion = 24347.073824 eV Total energy + Delta-G solvation = -3889.545681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.40899 -39.17264 -38.20539 -37.16049 -37.00623 -35.91769 -34.86451 -33.08299 -32.31567 -32.09755 -28.24226 -27.68201 -26.81736 -24.65890 -23.92523 -23.37755 -22.43943 -21.52311 -19.98116 -19.14409 -18.69790 -17.93000 -17.64530 -17.16587 -16.74580 -16.52513 -16.18976 -15.79778 -15.40961 -15.34022 -15.28152 -14.90870 -14.26762 -14.25264 -14.11532 -14.06100 -13.87725 -13.61783 -13.52898 -13.20447 -13.14195 -13.03699 -12.97065 -12.86052 -12.74513 -12.57463 -12.32922 -12.28850 -12.21790 -12.17082 -12.02442 -11.72555 -11.56518 -11.18280 -10.87324 -10.41798 -10.15406 -9.97349 -9.28582 -8.33497 -6.08467 -0.95746 -0.45743 0.23637 1.34308 1.43034 1.47239 1.81566 1.99123 2.26643 2.66312 2.92176 3.04796 3.09059 3.20479 3.62071 3.63660 3.78906 3.85320 3.90074 4.04201 4.23284 4.23819 4.26587 4.37080 4.52831 4.55705 4.64742 4.67781 4.71416 4.78286 4.79127 4.88153 4.93656 4.95526 5.03511 5.08748 5.18240 5.21431 5.28168 5.29018 5.31760 5.41148 5.54804 5.73401 6.06613 6.86909 7.05890 7.50126 8.16187 8.73698 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.003359 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.452889 B = 8335.012511 C = 9208.404378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.059 3.941 4 N -0.447 5.447 5 C -0.360 4.360 6 H 0.092 0.908 7 C 0.018 3.982 8 N -0.867 5.867 9 Si 0.974 3.026 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.251 1.251 13 C 0.485 3.515 14 O -0.592 6.592 15 C -0.069 4.069 16 C -0.114 4.114 17 C -0.030 4.030 18 C -0.655 4.655 19 S 2.498 3.502 20 O -0.973 6.973 21 O -0.958 6.958 22 C -0.540 4.540 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.024 4.024 26 C -0.154 4.154 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.263 0.737 35 H 0.115 0.885 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.177 0.823 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 -6.314 -16.482 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.063 4.063 4 N -0.165 5.165 5 C -0.487 4.487 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.502 5.502 9 Si 0.798 3.202 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.175 1.175 13 C 0.275 3.725 14 O -0.475 6.475 15 C -0.072 4.072 16 C -0.134 4.134 17 C -0.049 4.049 18 C -0.741 4.741 19 S 2.681 3.319 20 O -0.970 6.970 21 O -0.955 6.955 22 C -0.654 4.654 23 C -0.215 4.215 24 C -0.214 4.214 25 C -0.043 4.043 26 C -0.173 4.173 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.072 0.928 35 H 0.133 0.867 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.194 0.806 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.572 -5.414 -16.469 22.016 hybrid contribution 2.037 -0.278 1.360 2.465 sum -11.534 -5.692 -15.109 19.842 Atomic orbital electron populations 1.21746 0.92423 1.03161 1.02933 1.21886 0.97925 0.95503 1.02166 1.22880 0.81415 0.98449 1.03605 1.43444 1.05096 1.62520 1.05468 1.19395 1.11372 1.20461 0.97510 0.89077 1.26136 1.00938 0.92959 0.98875 1.69956 1.24309 1.12593 1.43350 0.85313 0.78308 0.77713 0.78862 1.20707 1.21229 1.17520 1.18520 0.87211 0.83154 0.83591 1.90539 1.16061 1.55441 1.85483 1.20693 0.95420 0.96559 0.94571 1.21320 1.00339 0.97914 0.93832 1.20979 0.92436 0.94727 0.96715 1.30825 1.07315 1.13893 1.22048 1.05699 0.73889 0.77108 0.75232 1.93515 1.77470 1.44273 1.81784 1.93508 1.32484 1.87451 1.82038 1.29814 1.12440 1.12987 1.10159 1.21885 1.00970 1.05288 0.93321 1.21885 1.03038 0.94082 1.02359 1.21248 1.00335 0.92049 0.90624 1.22766 0.92945 1.02074 0.99473 0.92219 0.91033 0.90736 0.91817 0.92415 0.92081 0.87652 0.92791 0.86688 0.82226 0.82087 0.90221 0.90586 0.87184 0.91008 0.89635 0.87992 0.80604 0.80040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.84 71.98 0.71 -2.27 16 2 C -0.14 -4.07 5.25 30.59 0.16 -3.91 16 3 C 0.06 2.24 4.84 86.38 0.42 2.65 16 4 N -0.45 -22.72 2.55 -638.96 -1.63 -24.35 16 5 C -0.36 -20.00 9.17 84.10 0.77 -19.23 16 6 H 0.09 4.75 7.91 -2.91 -0.02 4.72 16 7 C 0.02 1.01 4.31 84.96 0.37 1.38 16 8 N -0.87 -53.44 11.74 21.68 0.25 -53.18 16 9 Si 0.97 45.64 29.60 68.60 2.03 47.67 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 13 C 0.49 25.96 6.61 86.75 0.57 26.53 16 14 O -0.59 -37.00 14.55 -4.03 -0.06 -37.06 16 15 C -0.07 -2.93 5.62 -20.09 -0.11 -3.04 16 16 C -0.11 -4.51 9.60 22.54 0.22 -4.30 16 17 C -0.03 -0.92 9.45 22.23 0.21 -0.71 16 18 C -0.66 -17.32 5.06 22.33 0.11 -17.21 16 19 S 2.50 53.85 4.65 -56.49 -0.26 53.59 16 20 O -0.97 -27.27 17.11 -127.65 -2.18 -29.46 16 21 O -0.96 -24.26 16.99 -127.65 -2.17 -26.43 16 22 C -0.54 -6.46 3.44 30.59 0.11 -6.36 16 23 C -0.16 -1.41 9.20 71.98 0.66 -0.74 16 24 C -0.16 -1.59 8.97 71.98 0.65 -0.94 16 25 C -0.02 -0.63 8.52 22.23 0.19 -0.44 16 26 C -0.15 -5.00 7.53 22.54 0.17 -4.83 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.23 7.83 -2.39 -0.02 1.21 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.88 7.23 -2.39 -0.02 1.86 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.06 2.37 8.11 -2.39 -0.02 2.35 16 33 H 0.11 3.68 3.81 -5.32 -0.02 3.66 16 34 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 35 H 0.12 4.97 7.91 -2.91 -0.02 4.95 16 36 H 0.16 4.07 7.56 -2.91 -0.02 4.05 16 37 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 0.83 6.72 -2.38 -0.02 0.81 16 42 H 0.08 0.77 8.11 -2.39 -0.02 0.75 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.18 3.24 7.55 -2.91 -0.02 3.22 16 45 H 0.18 5.29 2.26 -2.91 -0.01 5.28 16 Total: -1.00 -84.19 374.40 2.16 -82.02 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.99 Total: 20.60 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 5.20 Total: -33.40 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -1.38 Total: -77.53 kcal Atomic # 8 Polarization: -88.54 SS G_CDS: -4.41 Total: -92.95 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 53.85 SS G_CDS: -0.26 Total: 53.59 kcal Total: -84.19 2.16 -82.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299056196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.624 kcal (2) G-P(sol) polarization free energy of solvation -84.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds