Wall clock time and date at job start Tue Mar 31 2020 22:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46753 * 2 1 4 4 H 1.09000 * 108.56992 * 52.94855 * 3 2 1 5 5 C 1.46924 * 108.50647 * 170.82838 * 3 2 1 6 6 N 1.50113 * 106.77776 * 177.84906 * 5 3 2 7 7 S 1.65603 * 120.63606 * 111.32529 * 6 5 3 8 8 O 1.42100 * 106.39882 * 203.53773 * 7 6 5 9 9 O 1.42096 * 106.40109 * 336.46071 * 7 6 5 10 10 C 1.76194 * 107.21825 * 89.99975 * 7 6 5 11 11 C 1.38630 * 119.75200 * 269.72558 * 10 7 6 12 12 C 1.37620 * 120.25476 * 179.76475 * 11 10 7 13 13 C 1.40721 * 119.73883 * 0.48529 * 12 11 10 14 14 C 1.41395 * 120.24083 * 179.79435 * 13 12 11 15 15 H 1.08000 * 119.99501 * 204.35992 * 14 13 12 16 16 C 1.39945 * 120.00610 * 24.35436 * 14 13 12 17 17 N 1.30821 * 119.99579 * 17.87552 * 16 14 13 18 18 Si 1.86796 * 120.00422 * 197.87526 * 16 14 13 19 19 H 1.48509 * 109.46883 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47052 * 119.99950 * 18 16 14 21 21 H 1.48492 * 109.47201 * 240.00483 * 18 16 14 22 22 C 1.40716 * 119.51424 * 359.76512 * 13 12 11 23 23 C 1.37617 * 119.74152 * 0.02562 * 22 13 12 24 24 C 1.43421 * 118.72799 * 291.34820 * 6 5 3 25 25 C 1.55326 * 116.24184 * 89.34996 * 24 6 5 26 26 C 1.55187 * 108.87424 * 319.46445 * 25 24 6 27 27 O 1.39639 * 110.56954 * 322.14325 * 26 25 24 28 28 H 1.09001 * 109.47006 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47172 * 299.99951 * 1 2 3 30 30 H 1.09002 * 109.47327 * 60.00153 * 1 2 3 31 31 H 1.09001 * 109.46809 * 240.00577 * 2 1 3 32 32 H 1.08997 * 109.47057 * 120.00543 * 2 1 3 33 33 H 1.09002 * 109.98815 * 297.15919 * 5 3 2 34 34 H 1.08996 * 109.99001 * 58.43136 * 5 3 2 35 35 H 1.08004 * 119.87221 * 359.97438 * 11 10 7 36 36 H 1.08000 * 120.13067 * 180.23336 * 12 11 10 37 37 H 0.97005 * 120.00507 * 179.97438 * 17 16 14 38 38 H 1.07995 * 120.13035 * 179.97438 * 22 13 12 39 39 H 1.08006 * 119.87557 * 180.02562 * 23 22 13 40 40 H 1.09000 * 108.12717 * 327.58989 * 24 6 5 41 41 H 1.09005 * 108.12988 * 211.10837 * 24 6 5 42 42 H 1.08999 * 109.57699 * 199.64562 * 25 24 6 43 43 H 1.09000 * 109.56988 * 79.27907 * 25 24 6 44 44 H 1.09007 * 109.25931 * 82.42517 * 26 25 24 45 45 H 1.09003 * 109.26011 * 201.89672 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5687 1.9773 0.8246 5 6 3.4922 1.4238 0.2221 6 7 3.9582 2.8495 0.1617 7 16 4.5083 3.6159 1.5227 8 8 4.3409 5.0084 1.2943 9 8 3.9309 2.9346 2.6279 10 6 6.2448 3.3321 1.6153 11 6 6.7256 2.2257 2.2984 12 6 8.0796 1.9915 2.3731 13 6 8.9776 2.8857 1.7613 14 6 10.3710 2.6576 1.8351 15 1 11.0594 3.4836 1.7342 16 6 10.8582 1.3616 2.0390 17 7 10.0855 0.3298 1.8161 18 14 12.6117 1.1051 2.6295 19 1 13.2723 2.4233 2.8066 20 1 12.5965 0.3814 3.9262 21 1 13.3602 0.3067 1.6258 22 6 8.4785 4.0082 1.0750 23 6 7.1203 4.2202 1.0095 24 6 3.9174 3.5353 -1.0973 25 6 2.5982 4.2855 -1.4283 26 6 1.3973 3.4118 -0.9778 27 8 1.6539 2.0612 -1.2228 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.7139 1.0006 1.2018 34 1 3.9806 0.8373 -0.5560 35 1 6.0347 1.5432 2.7709 36 1 8.4518 1.1269 2.9026 37 1 10.4232 -0.5686 1.9570 38 1 9.1586 4.7012 0.6022 39 1 6.7348 5.0808 0.4830 40 1 4.1002 2.8063 -1.8867 41 1 4.7326 4.2586 -1.1161 42 1 2.5383 4.4626 -2.5021 43 1 2.5764 5.2374 -0.8977 44 1 1.2267 3.5576 0.0889 45 1 0.5064 3.7136 -1.5287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313407135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:25 Heat of formation + Delta-G solvation = -106.401307 kcal Electronic energy + Delta-G solvation = -28389.465759 eV Core-core repulsion = 24498.402187 eV Total energy + Delta-G solvation = -3891.063573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.97377 -37.59549 -36.63745 -35.44624 -35.14373 -34.50456 -34.06487 -31.23751 -30.28187 -29.49660 -28.26388 -25.92752 -25.82780 -23.04450 -21.60206 -21.30659 -21.22714 -21.15561 -18.39436 -17.66658 -17.42111 -16.83296 -16.49309 -15.90652 -15.60875 -15.46567 -14.82652 -14.44286 -14.18157 -13.96664 -13.76227 -13.49996 -13.32679 -13.20464 -12.59602 -12.44322 -12.39591 -12.19630 -12.10415 -11.97919 -11.78961 -11.59229 -11.48609 -11.35027 -11.31412 -11.21357 -11.10784 -10.95497 -10.93453 -10.64892 -10.42875 -10.35198 -9.78702 -9.63533 -9.57923 -9.52908 -8.71062 -7.97771 -7.73022 -7.17154 -4.82363 1.15458 2.22480 2.85687 2.87994 2.90681 2.93911 3.51960 3.64623 3.86734 4.21013 4.47832 4.66405 4.86634 4.94687 5.00793 5.07129 5.10123 5.13068 5.26887 5.33438 5.39055 5.47001 5.61202 5.63646 5.80250 5.86005 5.87588 5.89944 5.96323 6.00539 6.03710 6.08612 6.14773 6.22145 6.36644 6.64834 6.66719 6.82016 6.99172 7.03195 7.20329 7.31470 7.40041 7.60604 7.74748 7.94259 8.29423 8.48892 8.62556 9.74274 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.003239 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.909834 B = 8643.270681 C = 9364.155750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.066 3.934 4 H 0.067 0.933 5 C 0.104 3.896 6 N -1.000 6.000 7 S 2.687 3.313 8 O -0.980 6.980 9 O -0.983 6.983 10 C -0.786 4.786 11 C -0.016 4.016 12 C -0.182 4.182 13 C 0.139 3.861 14 C -0.434 4.434 15 H 0.088 0.912 16 C 0.072 3.928 17 N -0.765 5.765 18 Si 0.917 3.083 19 H -0.256 1.256 20 H -0.267 1.267 21 H -0.270 1.270 22 C -0.238 4.238 23 C 0.001 3.999 24 C 0.132 3.868 25 C -0.168 4.168 26 C 0.055 3.945 27 O -0.347 6.347 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.289 0.711 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 -1.359 -4.921 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.006 3.994 4 H 0.085 0.915 5 C -0.021 4.021 6 N -0.834 5.834 7 S 2.788 3.212 8 O -0.971 6.971 9 O -0.974 6.974 10 C -0.883 4.883 11 C -0.037 4.037 12 C -0.202 4.202 13 C 0.135 3.865 14 C -0.461 4.461 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.387 5.387 18 Si 0.740 3.260 19 H -0.180 1.180 20 H -0.192 1.192 21 H -0.195 1.195 22 C -0.259 4.259 23 C -0.019 4.019 24 C 0.005 3.995 25 C -0.208 4.208 26 C -0.023 4.023 27 O -0.264 6.264 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.095 -1.245 -4.555 12.984 hybrid contribution 1.561 -0.329 0.104 1.598 sum -10.535 -1.573 -4.451 11.544 Atomic orbital electron populations 1.21714 0.95335 1.01475 1.02066 1.21730 0.96792 0.94964 1.03125 1.21557 0.95359 0.95185 0.87251 0.91533 1.21520 0.94327 0.81997 1.04241 1.57913 1.79549 1.21378 1.24592 1.01500 0.75049 0.72691 0.71979 1.93474 1.87287 1.30970 1.85367 1.93466 1.78205 1.75624 1.50073 1.29188 1.20828 1.11350 1.26902 1.20236 0.96120 0.93175 0.94129 1.21333 0.91718 1.02467 1.04721 1.17858 0.93341 0.89811 0.85467 1.19982 0.92561 0.93952 1.39635 0.89376 1.26141 1.01041 0.95560 0.92275 1.69822 1.37919 1.00257 1.30740 0.86103 0.80646 0.79924 0.79334 1.17966 1.19203 1.19508 1.21051 0.93990 1.02616 1.08212 1.20158 0.93681 0.94468 0.93606 1.20551 0.96637 0.96334 0.86019 1.23450 0.95706 0.99592 1.02082 1.22549 0.96896 0.82617 1.00260 1.87650 1.87155 1.21082 1.30562 0.92778 0.92988 0.92132 0.90815 0.90382 0.87809 0.89778 0.88002 0.85949 0.90017 0.88168 0.87893 0.90915 0.91188 0.90336 0.90341 0.92931 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.79 37.16 0.36 -1.00 16 2 C -0.13 -1.30 5.54 -26.73 -0.15 -1.45 16 3 C 0.07 0.81 2.03 -29.64 -0.06 0.75 16 4 H 0.07 0.86 6.75 -51.93 -0.35 0.51 16 5 C 0.10 1.43 5.38 -4.93 -0.03 1.40 16 6 N -1.00 -15.91 2.90 -115.56 -0.33 -16.24 16 7 S 2.69 52.39 5.64 -107.50 -0.61 51.79 16 8 O -0.98 -20.53 16.35 -57.17 -0.93 -21.47 16 9 O -0.98 -20.63 16.05 -57.17 -0.92 -21.55 16 10 C -0.79 -17.41 6.00 -39.29 -0.24 -17.65 16 11 C -0.02 -0.38 9.49 -39.66 -0.38 -0.75 16 12 C -0.18 -4.53 8.70 -38.87 -0.34 -4.87 16 13 C 0.14 3.51 5.58 -106.82 -0.60 2.91 16 14 C -0.43 -10.59 9.05 -37.74 -0.34 -10.93 16 15 H 0.09 2.04 7.91 -52.49 -0.42 1.63 16 16 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 17 N -0.77 -17.94 10.95 55.55 0.61 -17.34 16 18 Si 0.92 16.86 29.60 -169.99 -5.03 11.83 16 19 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 20 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 22 C -0.24 -5.63 9.80 -38.87 -0.38 -6.01 16 23 C 0.00 0.02 9.49 -39.66 -0.38 -0.35 16 24 C 0.13 1.89 4.93 -4.44 -0.02 1.86 16 25 C -0.17 -2.07 6.75 -24.34 -0.16 -2.24 16 26 C 0.05 0.65 6.38 38.32 0.24 0.89 16 27 O -0.35 -4.39 9.32 -31.93 -0.30 -4.69 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 7.78 -51.93 -0.40 0.18 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 33 H 0.10 1.44 7.27 -51.93 -0.38 1.06 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 2.16 7.59 -52.48 -0.40 1.76 16 36 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 37 H 0.29 6.03 8.30 -40.82 -0.34 5.70 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.10 2.08 7.60 -52.48 -0.40 1.68 16 40 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 41 H 0.07 1.03 7.73 -51.93 -0.40 0.63 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.65 6.66 -51.93 -0.35 0.31 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -28.83 371.03 -11.23 -40.06 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.77 Total: 7.88 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: -2.55 Total: -35.87 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.27 Total: -33.58 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -2.15 Total: -47.70 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 52.39 SS G_CDS: -0.61 Total: 51.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.83 -11.23 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313407135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.342 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds