Wall clock time and date at job start Tue Mar 31 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46753 * 2 1 4 4 H 1.09000 * 108.56992 * 52.94855 * 3 2 1 5 5 C 1.46924 * 108.50647 * 170.82838 * 3 2 1 6 6 N 1.50113 * 106.77776 * 177.84906 * 5 3 2 7 7 S 1.65603 * 120.63606 * 111.32529 * 6 5 3 8 8 O 1.42100 * 106.39882 * 203.53773 * 7 6 5 9 9 O 1.42096 * 106.40109 * 336.46071 * 7 6 5 10 10 C 1.76194 * 107.21825 * 89.99975 * 7 6 5 11 11 C 1.38630 * 119.75200 * 269.72558 * 10 7 6 12 12 C 1.37620 * 120.25476 * 179.76475 * 11 10 7 13 13 C 1.40721 * 119.73883 * 0.48529 * 12 11 10 14 14 C 1.41395 * 120.24083 * 179.79435 * 13 12 11 15 15 H 1.08000 * 119.99501 * 204.35992 * 14 13 12 16 16 C 1.39945 * 120.00610 * 24.35436 * 14 13 12 17 17 N 1.30821 * 119.99579 * 17.87552 * 16 14 13 18 18 Si 1.86796 * 120.00422 * 197.87526 * 16 14 13 19 19 H 1.48509 * 109.46883 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47052 * 119.99950 * 18 16 14 21 21 H 1.48492 * 109.47201 * 240.00483 * 18 16 14 22 22 C 1.40716 * 119.51424 * 359.76512 * 13 12 11 23 23 C 1.37617 * 119.74152 * 0.02562 * 22 13 12 24 24 C 1.43421 * 118.72799 * 291.34820 * 6 5 3 25 25 C 1.55326 * 116.24184 * 89.34996 * 24 6 5 26 26 C 1.55187 * 108.87424 * 319.46445 * 25 24 6 27 27 O 1.39639 * 110.56954 * 322.14325 * 26 25 24 28 28 H 1.09001 * 109.47006 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47172 * 299.99951 * 1 2 3 30 30 H 1.09002 * 109.47327 * 60.00153 * 1 2 3 31 31 H 1.09001 * 109.46809 * 240.00577 * 2 1 3 32 32 H 1.08997 * 109.47057 * 120.00543 * 2 1 3 33 33 H 1.09002 * 109.98815 * 297.15919 * 5 3 2 34 34 H 1.08996 * 109.99001 * 58.43136 * 5 3 2 35 35 H 1.08004 * 119.87221 * 359.97438 * 11 10 7 36 36 H 1.08000 * 120.13067 * 180.23336 * 12 11 10 37 37 H 0.97005 * 120.00507 * 179.97438 * 17 16 14 38 38 H 1.07995 * 120.13035 * 179.97438 * 22 13 12 39 39 H 1.08006 * 119.87557 * 180.02562 * 23 22 13 40 40 H 1.09000 * 108.12717 * 327.58989 * 24 6 5 41 41 H 1.09005 * 108.12988 * 211.10837 * 24 6 5 42 42 H 1.08999 * 109.57699 * 199.64562 * 25 24 6 43 43 H 1.09000 * 109.56988 * 79.27907 * 25 24 6 44 44 H 1.09007 * 109.25931 * 82.42517 * 26 25 24 45 45 H 1.09003 * 109.26011 * 201.89672 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5687 1.9773 0.8246 5 6 3.4922 1.4238 0.2221 6 7 3.9582 2.8495 0.1617 7 16 4.5083 3.6159 1.5227 8 8 4.3409 5.0084 1.2943 9 8 3.9309 2.9346 2.6279 10 6 6.2448 3.3321 1.6153 11 6 6.7256 2.2257 2.2984 12 6 8.0796 1.9915 2.3731 13 6 8.9776 2.8857 1.7613 14 6 10.3710 2.6576 1.8351 15 1 11.0594 3.4836 1.7342 16 6 10.8582 1.3616 2.0390 17 7 10.0855 0.3298 1.8161 18 14 12.6117 1.1051 2.6295 19 1 13.2723 2.4233 2.8066 20 1 12.5965 0.3814 3.9262 21 1 13.3602 0.3067 1.6258 22 6 8.4785 4.0082 1.0750 23 6 7.1203 4.2202 1.0095 24 6 3.9174 3.5353 -1.0973 25 6 2.5982 4.2855 -1.4283 26 6 1.3973 3.4118 -0.9778 27 8 1.6539 2.0612 -1.2228 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.7139 1.0006 1.2018 34 1 3.9806 0.8373 -0.5560 35 1 6.0347 1.5432 2.7709 36 1 8.4518 1.1269 2.9026 37 1 10.4232 -0.5686 1.9570 38 1 9.1586 4.7012 0.6022 39 1 6.7348 5.0808 0.4830 40 1 4.1002 2.8063 -1.8867 41 1 4.7326 4.2586 -1.1161 42 1 2.5383 4.4626 -2.5021 43 1 2.5764 5.2374 -0.8977 44 1 1.2267 3.5576 0.0889 45 1 0.5064 3.7136 -1.5287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313407135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:24 Heat of formation + Delta-G solvation = -123.031619 kcal Electronic energy + Delta-G solvation = -28390.186904 eV Core-core repulsion = 24498.402187 eV Total energy + Delta-G solvation = -3891.784717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.97345 -39.40173 -38.26806 -36.83976 -36.57376 -35.82274 -35.41451 -32.18274 -32.07633 -31.32054 -29.29595 -27.63200 -26.95665 -24.03071 -23.32237 -22.96546 -22.38091 -22.21591 -19.84092 -19.45381 -18.80901 -18.31926 -17.71083 -17.19751 -17.15489 -16.55431 -16.11492 -15.86149 -15.70834 -15.20373 -15.00844 -14.80160 -14.69641 -14.37042 -14.13217 -13.98847 -13.65494 -13.60374 -13.47556 -13.32273 -13.12754 -12.98633 -12.93933 -12.90122 -12.82709 -12.62418 -12.45812 -12.06019 -11.99091 -11.81402 -11.60225 -11.58497 -11.43998 -11.29438 -11.23800 -10.57167 -9.99310 -9.77988 -9.57863 -8.89055 -6.66530 -0.40383 0.45836 1.03136 1.35389 1.41117 1.52396 2.07978 2.11329 2.49450 2.85487 2.95680 3.38715 3.49754 3.74422 3.85312 3.97174 4.08342 4.11404 4.24806 4.25893 4.27720 4.29517 4.44835 4.52038 4.68659 4.72539 4.83985 4.85086 4.88250 4.90678 4.93440 5.00224 5.07693 5.09490 5.16387 5.21835 5.23393 5.28326 5.46578 5.49748 5.56546 5.67773 5.77274 5.91630 6.13131 6.24797 6.46891 6.66320 6.78777 8.06271 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.003239 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.909834 B = 8643.270681 C = 9364.155750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.066 3.934 4 H 0.059 0.941 5 C 0.097 3.903 6 N -0.994 5.994 7 S 2.714 3.286 8 O -0.994 6.994 9 O -0.998 6.998 10 C -0.799 4.799 11 C -0.021 4.021 12 C -0.206 4.206 13 C 0.111 3.889 14 C -0.464 4.464 15 H 0.091 0.909 16 C 0.035 3.965 17 N -0.793 5.793 18 Si 0.991 3.009 19 H -0.255 1.255 20 H -0.261 1.261 21 H -0.260 1.260 22 C -0.257 4.257 23 C -0.003 4.003 24 C 0.120 3.880 25 C -0.165 4.165 26 C 0.050 3.950 27 O -0.349 6.349 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.299 0.701 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.210 -1.873 -5.769 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.006 3.994 4 H 0.077 0.923 5 C -0.027 4.027 6 N -0.831 5.831 7 S 2.811 3.189 8 O -0.984 6.984 9 O -0.988 6.988 10 C -0.892 4.892 11 C -0.041 4.041 12 C -0.226 4.226 13 C 0.107 3.893 14 C -0.491 4.491 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.416 5.416 18 Si 0.810 3.190 19 H -0.178 1.178 20 H -0.186 1.186 21 H -0.185 1.185 22 C -0.277 4.277 23 C -0.023 4.023 24 C -0.006 4.006 25 C -0.205 4.205 26 C -0.028 4.028 27 O -0.267 6.267 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.777 -1.755 -5.402 13.982 hybrid contribution 1.640 -0.165 0.296 1.675 sum -11.136 -1.921 -5.106 12.401 Atomic orbital electron populations 1.21694 0.94489 1.02320 1.01830 1.21745 0.97506 0.93398 1.03776 1.21547 0.94177 0.96561 0.87087 0.92254 1.21795 0.95573 0.80643 1.04673 1.57623 1.78856 1.22443 1.24194 1.00726 0.73635 0.72248 0.72256 1.93449 1.87007 1.32158 1.85805 1.93440 1.77869 1.75898 1.51623 1.29702 1.23048 1.10515 1.25910 1.20448 0.95816 0.93796 0.94037 1.21356 0.92620 1.02776 1.05861 1.18207 0.94190 0.90648 0.86250 1.20255 0.92521 0.95111 1.41208 0.89096 1.27000 1.05224 0.94636 0.91618 1.69842 1.39927 1.01035 1.30819 0.85008 0.75190 0.79815 0.78943 1.17835 1.18585 1.18473 1.21281 0.94955 1.02824 1.08667 1.20437 0.93395 0.95053 0.93405 1.20814 0.97841 0.96706 0.85271 1.23459 0.94644 0.98918 1.03509 1.22665 0.97592 0.82273 1.00229 1.87650 1.87086 1.21395 1.30560 0.91417 0.93090 0.92496 0.90287 0.89640 0.88074 0.88511 0.86639 0.86975 0.88968 0.87057 0.85893 0.89632 0.91878 0.87964 0.91090 0.93770 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.79 71.98 0.70 -1.68 16 2 C -0.13 -2.31 5.54 30.60 0.17 -2.14 16 3 C 0.07 1.52 2.03 28.71 0.06 1.57 16 4 H 0.06 1.47 6.75 -2.39 -0.02 1.45 16 5 C 0.10 2.55 5.38 83.79 0.45 3.00 16 6 N -0.99 -30.52 2.90 -519.54 -1.51 -32.03 16 7 S 2.71 104.34 5.64 -56.49 -0.32 104.02 16 8 O -0.99 -40.89 16.35 -128.00 -2.09 -42.98 16 9 O -1.00 -41.38 16.05 -128.00 -2.05 -43.43 16 10 C -0.80 -35.53 6.00 22.46 0.13 -35.39 16 11 C -0.02 -0.99 9.49 22.22 0.21 -0.78 16 12 C -0.21 -10.58 8.70 22.73 0.20 -10.38 16 13 C 0.11 5.76 5.58 -21.29 -0.12 5.64 16 14 C -0.46 -23.19 9.05 23.46 0.21 -22.98 16 15 H 0.09 4.31 7.91 -2.91 -0.02 4.29 16 16 C 0.03 1.60 5.14 85.26 0.44 2.04 16 17 N -0.79 -37.76 10.95 21.83 0.24 -37.52 16 18 Si 0.99 34.29 29.60 68.60 2.03 36.32 16 19 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 20 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 21 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 22 C -0.26 -12.41 9.80 22.73 0.22 -12.18 16 23 C 0.00 -0.14 9.49 22.22 0.21 0.07 16 24 C 0.12 3.25 4.93 87.75 0.43 3.68 16 25 C -0.17 -3.72 6.75 32.14 0.22 -3.50 16 26 C 0.05 1.08 6.38 72.73 0.46 1.54 16 27 O -0.35 -8.04 9.32 -137.18 -1.28 -9.32 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.97 7.78 -2.39 -0.02 0.95 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 33 H 0.10 2.71 7.27 -2.39 -0.02 2.70 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.12 4.96 7.59 -2.91 -0.02 4.94 16 36 H 0.11 5.86 6.16 -2.91 -0.02 5.84 16 37 H 0.30 12.55 8.30 -92.70 -0.77 11.78 16 38 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 39 H 0.12 4.92 7.60 -2.91 -0.02 4.90 16 40 H 0.09 2.09 7.99 -2.39 -0.02 2.08 16 41 H 0.06 1.78 7.73 -2.38 -0.02 1.76 16 42 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.03 6.66 -2.38 -0.02 1.01 16 45 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -61.81 371.03 0.01 -61.80 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.98 Total: 34.64 kcal Atomic # 6 Polarization: -75.50 SS G_CDS: 4.01 Total: -71.49 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -1.27 Total: -69.55 kcal Atomic # 8 Polarization: -90.31 SS G_CDS: -5.42 Total: -95.74 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.32 kcal Atomic # 16 Polarization: 104.34 SS G_CDS: -0.32 Total: 104.02 kcal Total: -61.81 0.01 -61.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313407135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.232 kcal (2) G-P(sol) polarization free energy of solvation -61.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds