Wall clock time and date at job start Tue Mar 31 2020 22:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46920 * 2 1 4 4 H 1.08994 * 109.40592 * 305.16435 * 3 2 1 5 5 C 1.54670 * 109.34918 * 185.54645 * 3 2 1 6 6 N 1.48175 * 110.48841 * 200.71963 * 5 3 2 7 7 S 1.65602 * 118.51216 * 138.65638 * 6 5 3 8 8 O 1.42097 * 106.40526 * 156.19437 * 7 6 5 9 9 O 1.42104 * 106.40008 * 23.27754 * 7 6 5 10 10 C 1.76195 * 107.22060 * 269.74015 * 7 6 5 11 11 C 1.38637 * 119.75543 * 89.99428 * 10 7 6 12 12 C 1.37613 * 120.25090 * 180.02562 * 11 10 7 13 13 C 1.40708 * 119.74502 * 359.97438 * 12 11 10 14 14 C 1.41402 * 120.24184 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00108 * 25.62872 * 14 13 12 16 16 C 1.39948 * 119.99923 * 205.62799 * 14 13 12 17 17 N 1.30823 * 120.00327 * 200.10188 * 16 14 13 18 18 Si 1.86802 * 120.00000 * 20.09903 * 16 14 13 19 19 H 1.48497 * 109.47210 * 264.67992 * 18 16 14 20 20 H 1.48500 * 109.47157 * 144.67988 * 18 16 14 21 21 H 1.48506 * 109.47147 * 24.68190 * 18 16 14 22 22 C 1.40711 * 119.51700 * 0.28037 * 13 12 11 23 23 C 1.37626 * 119.73773 * 359.44088 * 22 13 12 24 24 C 1.44460 * 122.97784 * 318.38138 * 6 5 3 25 25 C 1.54876 * 109.32551 * 89.21389 * 24 6 5 26 26 C 1.47698 * 109.67734 * 290.10083 * 25 24 6 27 27 O 1.40528 * 109.40219 * 65.00188 * 3 2 1 28 28 H 1.09002 * 109.47270 * 299.99893 * 1 2 3 29 29 H 1.08997 * 109.47341 * 59.99736 * 1 2 3 30 30 H 1.09002 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47270 * 240.00107 * 2 1 3 32 32 H 1.08997 * 109.47324 * 119.99708 * 2 1 3 33 33 H 1.09003 * 109.42697 * 80.40966 * 5 3 2 34 34 H 1.09001 * 109.23744 * 320.91706 * 5 3 2 35 35 H 1.08001 * 119.87136 * 0.04832 * 11 10 7 36 36 H 1.08001 * 120.12452 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99652 * 5.10920 * 17 16 14 38 38 H 1.07994 * 120.13347 * 179.72193 * 22 13 12 39 39 H 1.08000 * 119.87342 * 180.27504 * 23 22 13 40 40 H 1.09000 * 109.49819 * 209.16590 * 24 6 5 41 41 H 1.09002 * 109.49321 * 329.22764 * 24 6 5 42 42 H 1.08997 * 109.43801 * 50.16586 * 25 24 6 43 43 H 1.09000 * 109.43950 * 170.08432 * 25 24 6 44 44 H 1.09003 * 108.64200 * 181.88443 * 26 25 24 45 45 H 1.08996 * 108.64394 * 299.71914 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9813 -0.8404 5 6 3.5802 1.4416 -0.1410 6 7 4.1461 2.7230 0.3420 7 16 5.5342 2.6840 1.2443 8 8 6.1445 3.9588 1.0970 9 8 6.1900 1.4661 0.9190 10 6 5.0541 2.5545 2.9346 11 6 4.8886 1.3036 3.5089 12 6 4.5134 1.1905 4.8281 13 6 4.2982 2.3507 5.5945 14 6 3.9130 2.2468 6.9511 15 1 4.1703 1.3654 7.5195 16 6 3.1982 3.2862 7.5571 17 7 3.1777 3.3928 8.8608 18 14 2.2732 4.5214 6.5044 19 1 3.1233 5.7190 6.2843 20 1 1.0221 4.9229 7.1964 21 1 1.9389 3.9043 5.1957 22 6 4.4639 3.6151 4.9998 23 6 4.8452 3.7043 3.6804 24 6 3.5449 4.0052 0.0567 25 6 2.5155 4.3461 1.1625 26 6 1.3471 3.4500 1.0476 27 8 1.6674 2.0694 1.2013 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8483 1.3028 -1.1885 34 1 3.9941 0.6220 0.4464 35 1 5.0551 0.4145 2.9188 36 1 4.3854 0.2150 5.2735 37 1 3.7170 2.7975 9.4046 38 1 4.2970 4.5121 5.5776 39 1 4.9774 4.6736 3.2230 40 1 4.3189 4.7723 0.0314 41 1 3.0416 3.9642 -0.9093 42 1 2.9777 4.2157 2.1410 43 1 2.1909 5.3805 1.0496 44 1 0.6198 3.7261 1.8111 45 1 0.8917 3.5952 0.0680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313407137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:28 Heat of formation + Delta-G solvation = -131.151513 kcal Electronic energy + Delta-G solvation = -29387.561922 eV Core-core repulsion = 25495.425100 eV Total energy + Delta-G solvation = -3892.136822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.54853 -39.64536 -38.31902 -36.88379 -36.55406 -35.93575 -35.24778 -32.56507 -32.43186 -31.67324 -29.01105 -27.24298 -27.00606 -23.85175 -23.66242 -22.74372 -22.58782 -21.75433 -20.38650 -19.82830 -18.94840 -18.32819 -17.97392 -17.10468 -16.71213 -16.50116 -16.35833 -16.05944 -15.78333 -15.14844 -14.94574 -14.79576 -14.59337 -14.50068 -14.41860 -14.25556 -13.88572 -13.70372 -13.35404 -13.32116 -13.25906 -13.11637 -12.81627 -12.74624 -12.69620 -12.51571 -12.20409 -12.11660 -11.87627 -11.84955 -11.57298 -11.47166 -11.42228 -11.36003 -11.09504 -10.45645 -10.01150 -9.79459 -9.69102 -9.57069 -6.87495 -0.39581 0.32683 0.79516 1.30391 1.45225 1.72099 2.03623 2.08264 2.39033 2.85207 2.99545 3.28751 3.40712 3.74061 3.86336 3.94944 4.10629 4.12304 4.16082 4.21979 4.35689 4.42246 4.50950 4.53096 4.54832 4.68203 4.76518 4.79513 4.81788 4.87227 4.95655 4.99172 5.02359 5.17273 5.19125 5.22361 5.32213 5.32977 5.36173 5.37277 5.48989 5.50851 5.67046 5.81889 5.90121 6.20285 6.43031 6.57664 6.59839 7.73286 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.005153 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.639169 B = 5432.006014 C = 6212.563589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.081 3.919 4 H 0.089 0.911 5 C 0.091 3.909 6 N -0.983 5.983 7 S 2.710 3.290 8 O -0.994 6.994 9 O -0.998 6.998 10 C -0.786 4.786 11 C 0.013 3.987 12 C -0.245 4.245 13 C 0.109 3.891 14 C -0.519 4.519 15 H 0.061 0.939 16 C 0.017 3.983 17 N -0.810 5.810 18 Si 1.096 2.904 19 H -0.255 1.255 20 H -0.275 1.275 21 H -0.256 1.256 22 C -0.272 4.272 23 C 0.017 3.983 24 C 0.109 3.891 25 C -0.191 4.191 26 C 0.063 3.937 27 O -0.382 6.382 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.287 0.713 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.052 0.948 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 0.393 -19.996 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.021 3.979 4 H 0.107 0.893 5 C -0.034 4.034 6 N -0.821 5.821 7 S 2.805 3.195 8 O -0.985 6.985 9 O -0.988 6.988 10 C -0.878 4.878 11 C -0.007 4.007 12 C -0.265 4.265 13 C 0.106 3.894 14 C -0.546 4.546 15 H 0.079 0.921 16 C -0.201 4.201 17 N -0.431 5.431 18 Si 0.915 3.085 19 H -0.181 1.181 20 H -0.201 1.201 21 H -0.181 1.181 22 C -0.291 4.291 23 C -0.002 4.002 24 C -0.016 4.016 25 C -0.230 4.230 26 C -0.013 4.013 27 O -0.300 6.300 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.070 0.930 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.633 1.589 -19.975 21.443 hybrid contribution 1.007 -1.691 1.639 2.561 sum -6.626 -0.101 -18.336 19.497 Atomic orbital electron populations 1.21656 0.94637 1.02007 1.01865 1.21729 0.97210 0.94297 1.03204 1.22621 0.91893 0.95308 0.88072 0.89287 1.22848 0.95797 0.83359 1.01385 1.57024 1.45190 1.12463 1.67435 1.00915 0.73323 0.71936 0.73306 1.93450 1.75045 1.42998 1.86990 1.93457 1.73477 1.47488 1.84406 1.29896 1.34177 0.99176 1.24510 1.20411 0.90472 0.95205 0.94569 1.21173 1.13003 0.97302 0.95024 1.18079 0.86443 0.92600 0.92309 1.20954 1.32671 1.04624 0.96373 0.92050 1.28458 0.95507 0.98965 0.97181 1.70585 1.32161 1.33790 1.06561 0.83348 0.75804 0.74498 0.74804 1.18052 1.20119 1.18064 1.21157 1.14407 0.96555 0.97022 1.20420 0.90170 0.96487 0.93154 1.21597 0.97185 0.83102 0.99752 1.22307 0.98496 1.02096 1.00144 1.21544 0.96002 0.81056 1.02746 1.87562 1.87155 1.22924 1.32357 0.93832 0.91532 0.92077 0.88302 0.92732 0.87972 0.90718 0.85791 0.87666 0.90235 0.87196 0.85176 0.88979 0.86655 0.92969 0.86795 0.90590 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.81 71.98 0.71 -1.61 16 2 C -0.13 -2.22 5.54 30.60 0.17 -2.05 16 3 C 0.08 1.58 2.32 31.16 0.07 1.65 16 4 H 0.09 1.22 7.21 -2.39 -0.02 1.20 16 5 C 0.09 2.02 5.86 86.63 0.51 2.53 16 6 N -0.98 -26.14 2.84 -509.91 -1.45 -27.59 16 7 S 2.71 96.77 5.58 -56.49 -0.31 96.45 16 8 O -0.99 -38.29 15.67 -128.00 -2.01 -40.30 16 9 O -1.00 -39.13 15.96 -128.00 -2.04 -41.17 16 10 C -0.79 -32.62 5.79 22.46 0.13 -32.49 16 11 C 0.01 0.57 9.49 22.22 0.21 0.78 16 12 C -0.24 -11.69 9.80 22.73 0.22 -11.47 16 13 C 0.11 5.57 5.20 -21.29 -0.11 5.46 16 14 C -0.52 -27.86 9.44 23.46 0.22 -27.64 16 15 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 16 C 0.02 0.89 5.40 85.26 0.46 1.35 16 17 N -0.81 -42.33 13.65 21.83 0.30 -42.03 16 18 Si 1.10 46.41 24.83 68.60 1.70 48.11 16 19 H -0.25 -9.96 6.64 99.48 0.66 -9.30 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.26 -10.83 6.84 99.48 0.68 -10.15 16 22 C -0.27 -12.87 7.21 22.73 0.16 -12.70 16 23 C 0.02 0.74 7.76 22.22 0.17 0.91 16 24 C 0.11 2.29 5.65 87.40 0.49 2.78 16 25 C -0.19 -4.26 6.04 29.58 0.18 -4.08 16 26 C 0.06 1.33 6.04 70.32 0.42 1.75 16 27 O -0.38 -10.11 9.38 -144.93 -1.36 -11.47 16 28 H 0.04 0.87 7.82 -2.39 -0.02 0.85 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.92 7.10 -2.39 -0.02 1.90 16 35 H 0.12 4.81 7.60 -2.91 -0.02 4.78 16 36 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.29 14.72 8.73 -92.71 -0.81 13.91 16 38 H 0.11 5.03 4.26 -2.91 -0.01 5.02 16 39 H 0.13 4.90 7.57 -2.91 -0.02 4.88 16 40 H 0.09 2.02 6.80 -2.39 -0.02 2.01 16 41 H 0.12 1.55 8.10 -2.39 -0.02 1.53 16 42 H 0.05 1.55 6.03 -2.39 -0.01 1.54 16 43 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.08 1.10 7.28 -2.39 -0.02 1.08 16 Total: -1.00 -66.22 361.44 -0.27 -66.48 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.88 Total: 26.33 kcal Atomic # 6 Polarization: -78.85 SS G_CDS: 4.02 Total: -74.82 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -1.15 Total: -69.62 kcal Atomic # 8 Polarization: -87.53 SS G_CDS: -5.41 Total: -92.94 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.70 Total: 48.11 kcal Atomic # 16 Polarization: 96.77 SS G_CDS: -0.31 Total: 96.45 kcal Total: -66.22 -0.27 -66.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313407137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.668 kcal (2) G-P(sol) polarization free energy of solvation -66.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds