Wall clock time and date at job start Tue Mar 31 2020 23:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00096 * 2 1 4 4 C 1.52997 * 109.47281 * 305.18050 * 3 2 1 5 5 C 1.53001 * 109.46726 * 65.17857 * 3 2 1 6 6 N 1.46504 * 109.47168 * 65.00376 * 5 3 2 7 7 S 1.65596 * 120.00101 * 164.99886 * 6 5 3 8 8 O 1.42105 * 106.40281 * 178.53637 * 7 6 5 9 9 O 1.42104 * 106.40182 * 311.45804 * 7 6 5 10 10 C 1.76199 * 107.22035 * 64.99883 * 7 6 5 11 11 C 1.38641 * 119.75084 * 269.73038 * 10 7 6 12 12 C 1.37614 * 120.25103 * 179.71518 * 11 10 7 13 13 C 1.40720 * 119.74267 * 0.57528 * 12 11 10 14 14 C 1.41394 * 120.24128 * 179.67632 * 13 12 11 15 15 H 1.07997 * 119.99739 * 154.33457 * 14 13 12 16 16 C 1.39947 * 120.00292 * 334.34209 * 14 13 12 17 17 N 1.30816 * 119.99642 * 341.40030 * 16 14 13 18 18 Si 1.86794 * 119.99922 * 161.40630 * 16 14 13 19 19 H 1.48503 * 109.47207 * 94.97775 * 18 16 14 20 20 H 1.48507 * 109.46937 * 214.97387 * 18 16 14 21 21 H 1.48495 * 109.47421 * 334.97592 * 18 16 14 22 22 C 1.40715 * 119.51414 * 359.69868 * 13 12 11 23 23 C 1.37627 * 119.74140 * 359.97438 * 22 13 12 24 24 C 1.52997 * 109.47126 * 185.17507 * 3 2 1 25 25 C 1.53007 * 117.49541 * 132.63032 * 24 3 2 26 26 C 1.53001 * 117.49731 * 63.97705 * 24 3 2 27 27 H 1.08997 * 109.47302 * 304.63394 * 1 2 3 28 28 H 1.08995 * 109.46971 * 64.63753 * 1 2 3 29 29 H 1.09001 * 109.47163 * 184.63768 * 1 2 3 30 30 H 1.08995 * 109.46907 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47012 * 300.00005 * 4 3 2 32 32 H 1.09004 * 109.47172 * 59.99602 * 4 3 2 33 33 H 1.09001 * 109.47223 * 305.00005 * 5 3 2 34 34 H 1.08995 * 109.46882 * 184.99756 * 5 3 2 35 35 H 0.96999 * 119.99935 * 344.99571 * 6 5 3 36 36 H 1.08003 * 119.87229 * 359.97438 * 11 10 7 37 37 H 1.08002 * 120.13116 * 180.27177 * 12 11 10 38 38 H 0.97009 * 119.99893 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.12894 * 179.97438 * 22 13 12 40 40 H 1.07995 * 119.87024 * 180.02562 * 23 22 13 41 41 H 1.09000 * 115.55637 * 278.29962 * 24 3 2 42 42 H 1.08998 * 117.49936 * 0.02562 * 25 24 3 43 43 H 1.09006 * 117.49363 * 145.02161 * 25 24 3 44 44 H 1.09005 * 117.50094 * 214.97795 * 26 24 3 45 45 H 1.09004 * 117.50101 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4585 2.1095 -1.1790 5 6 1.6644 2.0176 1.3093 6 7 2.2936 1.3133 2.4293 7 16 2.4089 2.0472 3.9092 8 8 3.0269 1.1065 4.7766 9 8 2.9321 3.3471 3.6728 10 6 0.7675 2.2730 4.5087 11 6 0.0829 3.4426 4.2160 12 6 -1.2015 3.6272 4.6740 13 6 -1.8155 2.6286 5.4524 14 6 -3.1323 2.8102 5.9343 15 1 -3.7500 1.9521 6.1544 16 6 -3.6354 4.1020 6.1258 17 7 -2.8147 5.1166 6.2171 18 14 -5.4787 4.3773 6.2513 19 1 -5.8811 4.3908 7.6807 20 1 -5.8285 5.6783 5.6263 21 1 -6.1920 3.2820 5.5466 22 6 -1.1091 1.4480 5.7482 23 6 0.1721 1.2820 5.2738 24 6 3.5300 1.1870 -0.1301 25 6 4.2232 2.0848 -1.1570 26 6 4.0835 0.5839 -1.4227 27 1 -0.3634 0.5840 0.8455 28 1 -0.3633 0.4402 -0.9286 29 1 -0.3633 -1.0243 0.0831 30 1 1.9015 3.1053 -1.1787 31 1 1.7048 1.6021 -2.1118 32 1 0.3757 2.1938 -1.0862 33 1 0.5829 2.0234 1.4451 34 1 2.0315 3.0432 1.2729 35 1 2.6426 0.4170 2.3039 36 1 0.5581 4.2098 3.6227 37 1 -1.7346 4.5372 4.4411 38 1 -3.1634 6.0120 6.3502 39 1 -1.5706 0.6753 6.3450 40 1 0.7160 0.3766 5.4992 41 1 4.0659 0.9735 0.7947 42 1 3.5965 2.7601 -1.7396 43 1 5.2153 2.4616 -0.9078 44 1 4.9837 -0.0263 -1.3483 45 1 3.3649 0.2710 -2.1802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314079291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:59 Heat of formation + Delta-G solvation = -81.428353 kcal Electronic energy + Delta-G solvation = -28040.839534 eV Core-core repulsion = 24150.858870 eV Total energy + Delta-G solvation = -3889.980664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.88200 -37.58468 -36.49436 -36.45793 -35.10467 -34.45367 -34.03814 -30.70277 -30.27144 -29.48819 -27.32412 -25.84172 -25.79276 -23.15589 -22.45580 -21.51531 -21.14620 -19.39432 -18.84163 -17.62572 -17.20594 -16.89220 -16.79901 -16.16228 -15.54486 -15.32281 -15.17772 -14.79530 -14.20607 -14.08303 -13.67721 -13.41113 -13.26687 -13.14466 -12.72681 -12.64228 -12.44017 -12.21080 -12.12622 -11.75794 -11.63326 -11.45161 -11.37479 -11.34672 -11.28739 -11.22778 -11.20578 -10.93481 -10.87794 -10.48755 -10.45925 -10.15031 -9.76916 -9.68618 -9.58747 -9.49570 -8.97997 -7.96571 -7.72173 -7.16137 -4.81019 1.27589 2.24663 2.85773 2.87773 2.90449 2.94355 3.33133 3.64848 3.75866 4.03957 4.23544 4.44161 4.54192 4.58885 4.76322 4.91551 4.97849 5.19526 5.22970 5.32530 5.35110 5.38248 5.42288 5.50347 5.58505 5.59046 5.69208 5.83852 5.86064 5.97908 6.00037 6.06618 6.09268 6.12055 6.22675 6.66686 6.70336 6.88939 7.03551 7.14705 7.32014 7.37429 7.41702 7.61126 7.74987 7.95855 8.30025 8.49764 8.63287 9.76471 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.003291 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.902176 B = 8505.051744 C = 9288.710116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.371 6.371 3 C 0.141 3.859 4 C -0.184 4.184 5 C 0.102 3.898 6 N -1.119 6.119 7 S 2.694 3.306 8 O -0.986 6.986 9 O -0.984 6.984 10 C -0.788 4.788 11 C -0.017 4.017 12 C -0.183 4.183 13 C 0.141 3.859 14 C -0.438 4.438 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.764 5.764 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.257 1.257 22 C -0.239 4.239 23 C 0.004 3.996 24 C -0.142 4.142 25 C -0.177 4.177 26 C -0.168 4.168 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.413 0.587 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.289 0.711 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -4.309 -14.025 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.290 6.290 3 C 0.100 3.900 4 C -0.242 4.242 5 C -0.025 4.025 6 N -0.876 5.876 7 S 2.792 3.208 8 O -0.976 6.976 9 O -0.974 6.974 10 C -0.884 4.884 11 C -0.037 4.037 12 C -0.203 4.203 13 C 0.138 3.862 14 C -0.465 4.465 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.387 5.387 18 Si 0.738 3.262 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.180 1.180 22 C -0.259 4.259 23 C -0.016 4.016 24 C -0.160 4.160 25 C -0.214 4.214 26 C -0.205 4.205 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.247 0.753 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.240 -3.781 -13.564 15.024 hybrid contribution -1.709 0.050 0.200 1.722 sum 3.531 -3.731 -13.364 14.317 Atomic orbital electron populations 1.22860 0.81252 1.02949 1.00521 1.87966 1.19579 1.26567 1.94868 1.21038 0.91728 0.83799 0.93398 1.22541 1.02092 1.01151 0.98415 1.21715 0.98241 0.96546 0.86007 1.55607 1.75912 1.29486 1.26576 1.01208 0.75115 0.72693 0.71778 1.93493 1.76439 1.63757 1.63956 1.93482 1.78869 1.39841 1.85220 1.29165 1.25092 1.06334 1.27769 1.20251 0.94323 0.93216 0.95914 1.21280 0.95242 1.01293 1.02510 1.17838 0.91808 0.90430 0.86166 1.19918 0.98007 0.93058 1.35550 0.89461 1.26128 1.01166 0.95538 0.92101 1.69830 1.37613 1.01252 1.29966 0.86169 0.81158 0.79196 0.79652 1.19109 1.19585 1.18009 1.21032 0.95383 1.00870 1.08661 1.20168 0.94351 0.94950 0.92180 1.22095 0.92655 1.06088 0.95148 1.23182 1.02044 0.93785 1.02379 1.22875 1.02777 0.95584 0.99232 0.92856 0.93964 0.89705 0.90567 0.91250 0.91468 0.91023 0.89563 0.75288 0.87942 0.86311 0.89946 0.88208 0.87815 0.86867 0.88020 0.88508 0.88874 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.13 101.05 1.02 1.24 16 2 O -0.37 -4.53 10.11 -35.23 -0.36 -4.88 16 3 C 0.14 1.61 0.61 -90.62 -0.06 1.55 16 4 C -0.18 -1.70 6.72 37.16 0.25 -1.45 16 5 C 0.10 1.38 5.07 -4.04 -0.02 1.36 16 6 N -1.12 -16.87 5.21 -10.61 -0.06 -16.93 16 7 S 2.69 52.07 5.73 -107.50 -0.62 51.46 16 8 O -0.99 -21.20 17.26 -57.17 -0.99 -22.18 16 9 O -0.98 -21.05 16.72 -57.17 -0.96 -22.01 16 10 C -0.79 -17.24 5.97 -39.29 -0.23 -17.47 16 11 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 12 C -0.18 -4.50 8.69 -38.87 -0.34 -4.84 16 13 C 0.14 3.54 5.56 -106.82 -0.59 2.95 16 14 C -0.44 -10.64 9.04 -37.74 -0.34 -10.99 16 15 H 0.09 2.00 7.91 -52.49 -0.42 1.59 16 16 C 0.07 1.67 5.11 -17.34 -0.09 1.58 16 17 N -0.76 -18.24 11.09 55.55 0.62 -17.63 16 18 Si 0.92 16.82 29.60 -169.99 -5.03 11.78 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 20 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 22 C -0.24 -5.63 9.80 -38.87 -0.38 -6.01 16 23 C 0.00 0.08 9.49 -39.66 -0.38 -0.30 16 24 C -0.14 -1.55 5.10 -90.62 -0.46 -2.01 16 25 C -0.18 -1.61 9.64 -26.69 -0.26 -1.87 16 26 C -0.17 -1.55 9.84 -26.70 -0.26 -1.81 16 27 H 0.05 0.62 6.25 -51.93 -0.32 0.30 16 28 H 0.04 0.38 6.61 -51.93 -0.34 0.04 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.64 6.79 -51.93 -0.35 0.29 16 31 H 0.07 0.58 6.99 -51.93 -0.36 0.22 16 32 H 0.07 0.59 6.59 -51.93 -0.34 0.25 16 33 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 34 H 0.09 1.17 7.75 -51.93 -0.40 0.77 16 35 H 0.41 5.64 7.87 -34.47 -0.27 5.36 16 36 H 0.10 2.15 7.59 -52.48 -0.40 1.75 16 37 H 0.12 2.95 6.28 -52.49 -0.33 2.62 16 38 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 39 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.10 2.12 7.60 -52.49 -0.40 1.72 16 41 H 0.11 1.33 7.03 -51.93 -0.37 0.97 16 42 H 0.10 0.82 5.88 -51.93 -0.31 0.52 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.10 0.86 7.36 -51.93 -0.38 0.47 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -30.06 372.93 -10.43 -40.49 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -6.15 Total: 13.09 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: -2.51 Total: -38.82 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.56 Total: -34.55 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -2.30 Total: -49.07 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.78 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.62 Total: 51.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.06 -10.43 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314079291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.937 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds