Wall clock time and date at job start Tue Mar 31 2020 23:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00096 * 2 1 4 4 C 1.52997 * 109.47281 * 305.18050 * 3 2 1 5 5 C 1.53001 * 109.46726 * 65.17857 * 3 2 1 6 6 N 1.46504 * 109.47168 * 65.00376 * 5 3 2 7 7 S 1.65596 * 120.00101 * 164.99886 * 6 5 3 8 8 O 1.42105 * 106.40281 * 178.53637 * 7 6 5 9 9 O 1.42104 * 106.40182 * 311.45804 * 7 6 5 10 10 C 1.76199 * 107.22035 * 64.99883 * 7 6 5 11 11 C 1.38641 * 119.75084 * 269.73038 * 10 7 6 12 12 C 1.37614 * 120.25103 * 179.71518 * 11 10 7 13 13 C 1.40720 * 119.74267 * 0.57528 * 12 11 10 14 14 C 1.41394 * 120.24128 * 179.67632 * 13 12 11 15 15 H 1.07997 * 119.99739 * 154.33457 * 14 13 12 16 16 C 1.39947 * 120.00292 * 334.34209 * 14 13 12 17 17 N 1.30816 * 119.99642 * 341.40030 * 16 14 13 18 18 Si 1.86794 * 119.99922 * 161.40630 * 16 14 13 19 19 H 1.48503 * 109.47207 * 94.97775 * 18 16 14 20 20 H 1.48507 * 109.46937 * 214.97387 * 18 16 14 21 21 H 1.48495 * 109.47421 * 334.97592 * 18 16 14 22 22 C 1.40715 * 119.51414 * 359.69868 * 13 12 11 23 23 C 1.37627 * 119.74140 * 359.97438 * 22 13 12 24 24 C 1.52997 * 109.47126 * 185.17507 * 3 2 1 25 25 C 1.53007 * 117.49541 * 132.63032 * 24 3 2 26 26 C 1.53001 * 117.49731 * 63.97705 * 24 3 2 27 27 H 1.08997 * 109.47302 * 304.63394 * 1 2 3 28 28 H 1.08995 * 109.46971 * 64.63753 * 1 2 3 29 29 H 1.09001 * 109.47163 * 184.63768 * 1 2 3 30 30 H 1.08995 * 109.46907 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47012 * 300.00005 * 4 3 2 32 32 H 1.09004 * 109.47172 * 59.99602 * 4 3 2 33 33 H 1.09001 * 109.47223 * 305.00005 * 5 3 2 34 34 H 1.08995 * 109.46882 * 184.99756 * 5 3 2 35 35 H 0.96999 * 119.99935 * 344.99571 * 6 5 3 36 36 H 1.08003 * 119.87229 * 359.97438 * 11 10 7 37 37 H 1.08002 * 120.13116 * 180.27177 * 12 11 10 38 38 H 0.97009 * 119.99893 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.12894 * 179.97438 * 22 13 12 40 40 H 1.07995 * 119.87024 * 180.02562 * 23 22 13 41 41 H 1.09000 * 115.55637 * 278.29962 * 24 3 2 42 42 H 1.08998 * 117.49936 * 0.02562 * 25 24 3 43 43 H 1.09006 * 117.49363 * 145.02161 * 25 24 3 44 44 H 1.09005 * 117.50094 * 214.97795 * 26 24 3 45 45 H 1.09004 * 117.50101 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4585 2.1095 -1.1790 5 6 1.6644 2.0176 1.3093 6 7 2.2936 1.3133 2.4293 7 16 2.4089 2.0472 3.9092 8 8 3.0269 1.1065 4.7766 9 8 2.9321 3.3471 3.6728 10 6 0.7675 2.2730 4.5087 11 6 0.0829 3.4426 4.2160 12 6 -1.2015 3.6272 4.6740 13 6 -1.8155 2.6286 5.4524 14 6 -3.1323 2.8102 5.9343 15 1 -3.7500 1.9521 6.1544 16 6 -3.6354 4.1020 6.1258 17 7 -2.8147 5.1166 6.2171 18 14 -5.4787 4.3773 6.2513 19 1 -5.8811 4.3908 7.6807 20 1 -5.8285 5.6783 5.6263 21 1 -6.1920 3.2820 5.5466 22 6 -1.1091 1.4480 5.7482 23 6 0.1721 1.2820 5.2738 24 6 3.5300 1.1870 -0.1301 25 6 4.2232 2.0848 -1.1570 26 6 4.0835 0.5839 -1.4227 27 1 -0.3634 0.5840 0.8455 28 1 -0.3633 0.4402 -0.9286 29 1 -0.3633 -1.0243 0.0831 30 1 1.9015 3.1053 -1.1787 31 1 1.7048 1.6021 -2.1118 32 1 0.3757 2.1938 -1.0862 33 1 0.5829 2.0234 1.4451 34 1 2.0315 3.0432 1.2729 35 1 2.6426 0.4170 2.3039 36 1 0.5581 4.2098 3.6227 37 1 -1.7346 4.5372 4.4411 38 1 -3.1634 6.0120 6.3502 39 1 -1.5706 0.6753 6.3450 40 1 0.7160 0.3766 5.4992 41 1 4.0659 0.9735 0.7947 42 1 3.5965 2.7601 -1.7396 43 1 5.2153 2.4616 -0.9078 44 1 4.9837 -0.0263 -1.3483 45 1 3.3649 0.2710 -2.1802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314079291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:58 Heat of formation + Delta-G solvation = -100.534806 kcal Electronic energy + Delta-G solvation = -28041.668052 eV Core-core repulsion = 24150.858870 eV Total energy + Delta-G solvation = -3890.809182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.75506 -39.38993 -38.14742 -37.28774 -36.79526 -35.82217 -35.62938 -32.07962 -31.58741 -31.31111 -28.15828 -27.62017 -26.83237 -24.04368 -23.30149 -23.14731 -22.95752 -20.39982 -20.24287 -19.42557 -18.66690 -18.34101 -17.67461 -17.50623 -17.21349 -16.42268 -16.21084 -15.90547 -15.81714 -15.43235 -15.09465 -14.95525 -14.47792 -14.19697 -14.11184 -13.99138 -13.78377 -13.53170 -13.43941 -13.12933 -13.06067 -13.02532 -12.96621 -12.88325 -12.56123 -12.54950 -12.31433 -12.02869 -12.00826 -11.76255 -11.55486 -11.36958 -11.23505 -11.20564 -10.94078 -10.59882 -10.24477 -9.79190 -9.56323 -8.88716 -6.65388 -0.31249 0.47555 1.04212 1.35703 1.41478 1.52862 2.11040 2.22353 2.49894 2.60976 2.92184 3.23829 3.50968 3.52416 3.63018 3.76457 3.98114 4.14742 4.24610 4.29708 4.30448 4.39255 4.41605 4.50858 4.53999 4.65516 4.71304 4.83280 4.85972 4.92157 4.94970 4.99256 5.03213 5.08434 5.10033 5.22833 5.23083 5.32973 5.38318 5.51790 5.58258 5.74380 5.91653 6.12763 6.15643 6.31058 6.47810 6.67487 6.79821 8.07623 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.003291 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.902176 B = 8505.051744 C = 9288.710116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.383 6.383 3 C 0.145 3.855 4 C -0.183 4.183 5 C 0.093 3.907 6 N -1.102 6.102 7 S 2.725 3.275 8 O -1.005 7.005 9 O -1.001 7.001 10 C -0.796 4.796 11 C -0.019 4.019 12 C -0.204 4.204 13 C 0.114 3.886 14 C -0.467 4.467 15 H 0.092 0.908 16 C 0.035 3.965 17 N -0.798 5.798 18 Si 0.991 3.009 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.253 1.253 22 C -0.256 4.256 23 C -0.002 4.002 24 C -0.167 4.167 25 C -0.169 4.169 26 C -0.159 4.159 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.422 0.578 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.299 0.701 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.128 -4.503 -15.602 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.302 6.302 3 C 0.104 3.896 4 C -0.240 4.240 5 C -0.034 4.034 6 N -0.863 5.863 7 S 2.820 3.180 8 O -0.996 6.996 9 O -0.992 6.992 10 C -0.889 4.889 11 C -0.039 4.039 12 C -0.225 4.225 13 C 0.111 3.889 14 C -0.494 4.494 15 H 0.110 0.890 16 C -0.184 4.184 17 N -0.421 5.421 18 Si 0.810 3.190 19 H -0.185 1.185 20 H -0.187 1.187 21 H -0.176 1.176 22 C -0.277 4.277 23 C -0.022 4.022 24 C -0.185 4.185 25 C -0.206 4.206 26 C -0.196 4.196 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.259 0.741 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.009 -3.983 -15.125 16.424 hybrid contribution -1.515 0.068 0.640 1.647 sum 3.493 -3.915 -14.485 15.406 Atomic orbital electron populations 1.22956 0.80711 1.03483 1.00816 1.87954 1.20249 1.27108 1.94882 1.21038 0.92222 0.83595 0.92704 1.22545 1.02278 1.01390 0.97821 1.21971 0.97962 0.96866 0.86587 1.55163 1.75755 1.29946 1.25399 1.00281 0.73571 0.72064 0.72040 1.93459 1.76437 1.64119 1.65544 1.93457 1.78735 1.41256 1.85706 1.29615 1.26187 1.05761 1.27380 1.20440 0.93900 0.93893 0.95630 1.21298 0.96212 1.01280 1.03674 1.18181 0.92715 0.91184 0.86869 1.20214 0.98253 0.94245 1.36702 0.88996 1.27017 1.05831 0.94620 0.90943 1.69864 1.39869 1.02031 1.30345 0.85048 0.74847 0.79313 0.79781 1.18514 1.18656 1.17616 1.21254 0.96087 1.01009 1.09316 1.20438 0.94165 0.95756 0.91823 1.22114 0.92325 1.08501 0.95567 1.23293 1.02191 0.93964 1.01146 1.22927 1.02856 0.95876 0.97919 0.94346 0.92177 0.88843 0.89651 0.89960 0.91175 0.91318 0.89487 0.74119 0.86586 0.87308 0.89018 0.87179 0.86001 0.88126 0.86798 0.88040 0.88245 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.13 113.37 1.15 1.48 16 2 O -0.38 -8.76 10.11 -148.98 -1.51 -10.27 16 3 C 0.15 3.08 0.61 -10.80 -0.01 3.07 16 4 C -0.18 -2.96 6.72 71.98 0.48 -2.48 16 5 C 0.09 2.43 5.07 86.38 0.44 2.87 16 6 N -1.10 -32.35 5.21 -187.48 -0.98 -33.33 16 7 S 2.72 103.84 5.73 -56.49 -0.32 103.52 16 8 O -1.01 -42.47 17.26 -128.00 -2.21 -44.68 16 9 O -1.00 -42.20 16.72 -128.00 -2.14 -44.34 16 10 C -0.80 -34.94 5.97 22.46 0.13 -34.81 16 11 C -0.02 -0.86 9.49 22.22 0.21 -0.65 16 12 C -0.20 -10.34 8.69 22.73 0.20 -10.15 16 13 C 0.11 5.87 5.56 -21.29 -0.12 5.75 16 14 C -0.47 -23.18 9.04 23.46 0.21 -22.97 16 15 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 16 C 0.04 1.63 5.11 85.26 0.44 2.06 16 17 N -0.80 -38.70 11.09 21.83 0.24 -38.46 16 18 Si 0.99 34.13 29.60 68.60 2.03 36.16 16 19 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 20 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 21 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 22 C -0.26 -12.31 9.80 22.73 0.22 -12.09 16 23 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 24 C -0.17 -3.38 5.10 -10.79 -0.06 -3.43 16 25 C -0.17 -2.68 9.64 30.62 0.30 -2.39 16 26 C -0.16 -2.57 9.84 30.62 0.30 -2.27 16 27 H 0.04 0.88 6.25 -2.39 -0.01 0.86 16 28 H 0.06 0.98 6.61 -2.39 -0.02 0.96 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.23 6.79 -2.39 -0.02 1.21 16 31 H 0.08 1.14 6.99 -2.38 -0.02 1.12 16 32 H 0.07 1.09 6.59 -2.38 -0.02 1.08 16 33 H 0.07 1.85 6.34 -2.39 -0.02 1.84 16 34 H 0.09 2.27 7.75 -2.39 -0.02 2.26 16 35 H 0.42 11.13 7.87 -96.75 -0.76 10.37 16 36 H 0.12 4.91 7.59 -2.91 -0.02 4.89 16 37 H 0.11 5.61 6.28 -2.91 -0.02 5.59 16 38 H 0.30 12.85 8.30 -92.70 -0.77 12.08 16 39 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.12 4.93 7.60 -2.91 -0.02 4.90 16 41 H 0.10 2.26 7.03 -2.39 -0.02 2.25 16 42 H 0.11 1.51 5.88 -2.39 -0.01 1.50 16 43 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.10 1.53 7.36 -2.38 -0.02 1.52 16 Total: -1.00 -64.22 372.93 -0.51 -64.73 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: 0.26 Total: 42.53 kcal Atomic # 6 Polarization: -79.98 SS G_CDS: 4.11 Total: -75.87 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -0.73 Total: -71.79 kcal Atomic # 8 Polarization: -93.43 SS G_CDS: -5.86 Total: -99.29 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Atomic # 16 Polarization: 103.84 SS G_CDS: -0.32 Total: 103.52 kcal Total: -64.22 -0.51 -64.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314079291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.801 kcal (2) G-P(sol) polarization free energy of solvation -64.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds