Wall clock time and date at job start Tue Mar 31 2020 23:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47362 * 2 1 4 4 O 1.21253 * 119.99530 * 359.97438 * 3 2 1 5 5 C 1.47166 * 120.00267 * 180.02562 * 3 2 1 6 6 C 1.39874 * 120.16847 * 359.71905 * 5 3 2 7 7 C 1.37861 * 119.82068 * 179.72235 * 6 5 3 8 8 C 1.38432 * 120.17462 * 0.55757 * 7 6 5 9 9 C 1.38381 * 120.34537 * 359.71956 * 8 7 6 10 10 S 1.76204 * 119.91192 * 180.02562 * 9 8 7 11 11 O 1.42098 * 106.39834 * 23.51908 * 10 9 8 12 12 O 1.42094 * 106.40050 * 156.44077 * 10 9 8 13 13 N 1.65604 * 107.21734 * 269.98129 * 10 9 8 14 14 C 1.46501 * 120.00283 * 64.99641 * 13 10 9 15 15 C 1.52996 * 109.47014 * 164.99905 * 14 13 10 16 16 C 1.52998 * 109.47535 * 300.00452 * 15 14 13 17 17 C 1.53004 * 109.47081 * 60.00534 * 15 14 13 18 18 C 1.50698 * 109.47282 * 180.02562 * 15 14 13 19 19 H 1.07997 * 119.99652 * 1.36397 * 18 15 14 20 20 C 1.37872 * 120.00232 * 181.35678 * 18 15 14 21 21 N 1.31518 * 120.00098 * 193.96641 * 20 18 15 22 22 Si 1.86797 * 120.00121 * 13.97139 * 20 18 15 23 23 H 1.48501 * 109.47355 * 84.55180 * 22 20 18 24 24 H 1.48506 * 109.47147 * 204.55379 * 22 20 18 25 25 H 1.48503 * 109.46883 * 324.54898 * 22 20 18 26 26 C 1.37906 * 120.17366 * 0.02562 * 9 8 7 27 27 H 1.08993 * 109.47194 * 300.00078 * 1 2 3 28 28 H 1.08999 * 109.47054 * 60.00147 * 1 2 3 29 29 H 1.09002 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47054 * 119.99853 * 2 1 3 31 31 H 1.09003 * 109.47577 * 239.99490 * 2 1 3 32 32 H 1.08003 * 120.09020 * 0.02562 * 6 5 3 33 33 H 1.08004 * 119.91668 * 180.25358 * 7 6 5 34 34 H 1.08001 * 119.82281 * 179.74015 * 8 7 6 35 35 H 0.96999 * 119.99387 * 245.00317 * 13 10 9 36 36 H 1.08994 * 109.47055 * 285.00408 * 14 13 10 37 37 H 1.09002 * 109.46837 * 45.00109 * 14 13 10 38 38 H 1.09003 * 109.47065 * 69.32904 * 16 15 14 39 39 H 1.08998 * 109.47610 * 189.33331 * 16 15 14 40 40 H 1.09002 * 109.47170 * 309.33467 * 16 15 14 41 41 H 1.08994 * 109.47200 * 59.99366 * 17 15 14 42 42 H 1.09000 * 109.47132 * 180.02562 * 17 15 14 43 43 H 1.08999 * 109.46645 * 299.99724 * 17 15 14 44 44 H 0.96999 * 119.99777 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.08793 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3424 -0.0005 5 6 3.4793 1.6897 -0.0006 6 6 4.3913 0.6293 0.0048 7 6 5.7452 0.8894 -0.0016 8 6 6.2027 2.1959 -0.0016 9 6 5.3066 3.2504 -0.0011 10 16 5.9016 4.9090 -0.0019 11 8 7.2131 4.8645 -0.5468 12 8 4.8605 5.7084 -0.5461 13 7 6.0678 5.3709 1.5798 14 6 7.0507 4.7049 2.4380 15 6 7.2722 5.5384 3.7017 16 6 7.7900 6.9249 3.3140 17 6 5.9493 5.6809 4.4570 18 6 8.2838 4.8537 4.5842 19 1 8.7409 3.9289 4.2647 20 6 8.6257 5.4079 5.7995 21 7 9.6891 4.9775 6.4426 22 14 7.5785 6.7700 6.5326 23 1 6.4394 6.1734 7.2754 24 1 8.4037 7.5833 7.4616 25 1 7.0600 7.6363 5.4436 26 6 3.9493 3.0067 0.0000 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 4.0359 -0.3906 0.0090 33 1 6.4508 0.0717 -0.0015 34 1 7.2645 2.3931 -0.0024 35 1 5.5142 6.0823 1.9379 36 1 6.6818 3.7171 2.7142 37 1 7.9932 4.6033 1.8999 38 1 6.9964 7.4833 2.8173 39 1 8.1040 7.4594 4.2105 40 1 8.6384 6.8199 2.6377 41 1 5.5803 4.6932 4.7332 42 1 6.1069 6.2751 5.3571 43 1 5.2179 6.1764 3.8184 44 1 9.9298 5.3677 7.2974 45 1 3.2512 3.8307 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315956225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:38 Heat of formation + Delta-G solvation = -101.967459 kcal Electronic energy + Delta-G solvation = -27655.711214 eV Core-core repulsion = 23764.839908 eV Total energy + Delta-G solvation = -3890.871307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.19928 -39.38456 -38.97478 -38.35128 -37.03334 -34.94820 -34.09310 -33.16033 -32.43203 -32.28671 -27.99906 -27.35384 -26.67056 -26.49715 -24.62700 -23.44339 -21.35861 -21.02022 -20.27848 -19.07813 -18.68507 -17.95445 -17.28226 -17.17057 -16.99340 -16.87151 -16.48666 -16.44326 -15.83512 -15.42455 -15.27576 -14.92854 -14.78790 -14.50974 -14.43467 -14.16260 -13.78029 -13.73790 -13.48787 -13.37871 -13.31876 -13.19929 -13.14185 -13.12593 -12.84969 -12.55613 -12.36451 -12.03075 -12.02306 -11.95692 -11.92004 -11.71145 -11.02200 -10.80699 -10.58937 -10.56798 -10.49429 -10.27447 -10.18775 -8.27579 -6.26993 -0.72836 -0.54108 -0.15966 1.23383 1.36487 1.40284 1.49989 1.96860 2.36535 2.44235 2.70932 2.85265 3.09301 3.29789 3.69781 3.80016 3.91012 4.02383 4.09273 4.14812 4.27889 4.28264 4.37342 4.44815 4.51913 4.53905 4.71519 4.77715 4.83882 4.89392 4.95562 4.96841 5.00520 5.03932 5.05480 5.05627 5.10501 5.14483 5.27690 5.33113 5.52055 5.65592 5.74158 5.81996 6.06081 6.35386 6.45655 6.78026 7.38267 8.88658 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.003285 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.784160 B = 8521.360961 C = 9118.896997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C 0.394 3.606 4 O -0.494 6.494 5 C -0.207 4.207 6 C -0.003 4.003 7 C -0.144 4.144 8 C -0.003 4.003 9 C -0.692 4.692 10 S 2.707 3.293 11 O -0.981 6.981 12 O -0.988 6.988 13 N -1.107 6.107 14 C 0.146 3.854 15 C 0.029 3.971 16 C -0.147 4.147 17 C -0.152 4.152 18 C -0.509 4.509 19 H 0.045 0.955 20 C 0.022 3.978 21 N -0.943 5.943 22 Si 0.934 3.066 23 H -0.282 1.282 24 H -0.319 1.319 25 H -0.214 1.214 26 C 0.015 3.985 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.189 0.811 33 H 0.177 0.823 34 H 0.151 0.849 35 H 0.422 0.578 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.031 0.969 43 H 0.067 0.933 44 H 0.263 0.737 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.535 -12.917 -14.010 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.200 4.200 3 C 0.274 3.726 4 O -0.372 6.372 5 C -0.209 4.209 6 C -0.021 4.021 7 C -0.162 4.162 8 C -0.023 4.023 9 C -0.780 4.780 10 S 2.799 3.201 11 O -0.971 6.971 12 O -0.978 6.978 13 N -0.870 5.870 14 C 0.020 3.980 15 C 0.027 3.973 16 C -0.205 4.205 17 C -0.209 4.209 18 C -0.548 4.548 19 H 0.063 0.937 20 C -0.176 4.176 21 N -0.582 5.582 22 Si 0.765 3.235 23 H -0.210 1.210 24 H -0.249 1.249 25 H -0.138 1.138 26 C -0.005 4.005 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.206 0.794 33 H 0.195 0.805 34 H 0.169 0.831 35 H 0.260 0.740 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.542 -12.052 -14.689 23.927 hybrid contribution -0.291 0.619 1.376 1.537 sum -14.833 -11.433 -13.313 22.978 Atomic orbital electron populations 1.21628 0.94194 1.02954 1.01726 1.22105 0.97922 0.92612 1.07398 1.23184 0.86933 0.93014 0.69485 1.90543 1.59020 1.49504 1.38132 1.20898 0.96426 0.94154 1.09436 1.22261 0.92280 1.00231 0.87292 1.21784 0.96915 0.96867 1.00681 1.21590 1.00098 0.92948 0.87631 1.30695 1.02541 1.23945 1.20851 1.01175 0.72796 0.73807 0.72339 1.93553 1.39106 1.87192 1.77212 1.93545 1.58685 1.68357 1.77260 1.55339 1.51110 1.50101 1.30427 1.21235 0.90238 0.95468 0.91029 1.18615 0.93178 0.93288 0.92216 1.22280 1.00342 0.97524 1.00343 1.22337 0.97978 1.01254 0.99327 1.21062 1.22424 1.08850 1.02435 0.93697 1.25706 0.95221 0.98887 0.97778 1.70086 1.25762 1.45781 1.16615 0.86501 0.77845 0.80866 0.78329 1.20993 1.24889 1.13821 1.21177 0.93295 0.98333 0.87701 0.93741 0.93531 0.89469 0.85300 0.85037 0.79418 0.80513 0.83105 0.74008 0.91164 0.91208 0.92508 0.93932 0.93671 0.92490 0.95102 0.91426 0.92823 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.20 71.98 0.66 -1.02 16 2 C -0.16 -1.41 5.03 29.85 0.15 -1.26 16 3 C 0.39 7.37 7.12 28.03 0.20 7.57 16 4 O -0.49 -13.61 15.98 -2.95 -0.05 -13.66 16 5 C -0.21 -3.96 5.87 -20.15 -0.12 -4.07 16 6 C 0.00 -0.03 9.47 22.58 0.21 0.18 16 7 C -0.14 -1.95 10.03 22.23 0.22 -1.73 16 8 C 0.00 -0.07 9.52 22.35 0.21 0.14 16 9 C -0.69 -17.42 5.94 22.23 0.13 -17.29 16 10 S 2.71 80.16 5.74 -56.49 -0.32 79.84 16 11 O -0.98 -33.62 16.74 -128.00 -2.14 -35.76 16 12 O -0.99 -33.42 17.27 -128.00 -2.21 -35.63 16 13 N -1.11 -32.55 5.43 -187.50 -1.02 -33.57 16 14 C 0.15 5.01 5.04 86.38 0.44 5.44 16 15 C 0.03 1.20 0.51 -52.93 -0.03 1.17 16 16 C -0.15 -5.83 7.54 71.98 0.54 -5.28 16 17 C -0.15 -5.63 7.52 71.98 0.54 -5.09 16 18 C -0.51 -26.44 8.62 25.60 0.22 -26.22 16 19 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 20 C 0.02 1.20 5.32 84.65 0.45 1.65 16 21 N -0.94 -56.78 13.96 21.45 0.30 -56.48 16 22 Si 0.93 42.83 22.79 68.60 1.56 44.39 16 23 H -0.28 -12.67 7.10 99.48 0.71 -11.96 16 24 H -0.32 -15.24 7.11 99.48 0.71 -14.53 16 25 H -0.21 -8.63 4.65 99.48 0.46 -8.16 16 26 C 0.01 0.37 9.07 22.58 0.20 0.57 16 27 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 28 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.13 0.46 8.08 -2.39 -0.02 0.45 16 31 H 0.13 0.36 8.09 -2.39 -0.02 0.34 16 32 H 0.19 0.30 7.05 -2.91 -0.02 0.28 16 33 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.15 2.98 7.60 -2.91 -0.02 2.96 16 35 H 0.42 11.26 6.53 -96.75 -0.63 10.63 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 2.49 7.75 -2.39 -0.02 2.47 16 38 H 0.06 1.87 7.47 -2.39 -0.02 1.85 16 39 H 0.04 1.77 4.30 -2.39 -0.01 1.76 16 40 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.03 1.22 2.25 -2.39 -0.01 1.21 16 43 H 0.07 2.02 6.60 -2.39 -0.02 2.00 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16 45 H 0.13 3.66 7.20 -2.91 -0.02 3.64 16 Total: -1.00 -77.69 368.59 0.30 -77.39 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.14 Total: 18.71 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 4.04 Total: -45.23 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -0.72 Total: -90.04 kcal Atomic # 8 Polarization: -80.65 SS G_CDS: -4.40 Total: -85.05 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.56 Total: 44.39 kcal Atomic # 16 Polarization: 80.16 SS G_CDS: -0.32 Total: 79.84 kcal Total: -77.69 0.30 -77.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315956225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.578 kcal (2) G-P(sol) polarization free energy of solvation -77.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds