Wall clock time and date at job start Tue Mar 31 2020 22:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 C 1.50695 * 109.47333 * 239.99963 * 2 1 3 5 5 H 1.07995 * 120.00224 * 240.00261 * 4 2 1 6 6 C 1.37880 * 119.99764 * 59.99532 * 4 2 1 7 7 N 1.31516 * 120.00036 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47224 * 90.00346 * 8 6 4 10 10 H 1.48496 * 109.47332 * 210.00368 * 8 6 4 11 11 H 1.48507 * 109.47101 * 330.00745 * 8 6 4 12 12 C 1.52999 * 109.46864 * 119.99761 * 2 1 3 13 13 S 1.81403 * 109.47470 * 299.99853 * 12 2 1 14 14 O 1.42098 * 110.53926 * 68.37674 * 13 12 2 15 15 O 1.42101 * 110.54324 * 291.62358 * 13 12 2 16 16 N 1.65601 * 104.44987 * 180.02562 * 13 12 2 17 17 C 1.46506 * 119.99770 * 64.99859 * 16 13 12 18 18 H 1.08997 * 109.69255 * 335.55360 * 17 16 13 19 19 C 1.53405 * 109.72173 * 96.12742 * 17 16 13 20 20 O 1.42831 * 108.37479 * 184.41121 * 19 17 16 21 21 C 1.35855 * 117.77235 * 310.48060 * 20 19 17 22 22 C 1.39144 * 118.49515 * 196.82947 * 21 20 19 23 23 C 1.37973 * 120.21556 * 180.72505 * 22 21 20 24 24 C 1.38293 * 119.95552 * 0.26685 * 23 22 21 25 25 C 1.38107 * 119.98337 * 359.89042 * 24 23 22 26 26 C 1.38370 * 121.79955 * 17.95067 * 21 20 19 27 27 C 1.50775 * 121.40187 * 358.75599 * 26 21 20 28 28 H 1.09007 * 109.46665 * 300.00160 * 1 2 3 29 29 H 1.08997 * 109.47178 * 59.99867 * 1 2 3 30 30 H 1.08999 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46858 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47289 * 300.00065 * 3 2 1 33 33 H 1.09002 * 109.47105 * 60.00269 * 3 2 1 34 34 H 0.96998 * 119.99402 * 179.97438 * 7 6 4 35 35 H 1.09008 * 109.47022 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.47141 * 60.00645 * 12 2 1 37 37 H 0.96994 * 119.99766 * 245.00173 * 16 13 12 38 38 H 1.09001 * 109.68063 * 304.12533 * 19 17 16 39 39 H 1.08991 * 109.68640 * 64.69128 * 19 17 16 40 40 H 1.08002 * 119.89570 * 1.00949 * 22 21 20 41 41 H 1.07997 * 120.02385 * 180.23978 * 23 22 21 42 42 H 1.07996 * 120.00593 * 179.91790 * 24 23 22 43 43 H 1.08007 * 119.83817 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.43177 * 138.23309 * 27 26 21 45 45 H 1.08993 * 109.43148 * 258.09810 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 6 2.0399 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0280 -0.0182 2.8544 15 8 2.0480 1.4101 2.8545 16 7 2.0541 -0.7399 3.9937 17 6 3.5027 -0.7962 4.2054 18 1 4.0191 -0.6052 3.2647 19 6 3.9152 0.2543 5.2444 20 8 5.3394 0.2456 5.3525 21 6 5.9540 -0.9540 5.5226 22 6 7.2681 -0.9678 5.9799 23 6 7.9312 -2.1655 6.1510 24 6 7.2909 -3.3568 5.8623 25 6 5.9877 -3.3467 5.4051 26 6 5.3167 -2.1475 5.2324 27 6 3.8929 -2.1775 4.7370 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 0.7094 1.1617 -3.4844 35 1 3.1300 -0.7216 1.2491 36 1 1.6767 -1.7489 1.2493 37 1 1.4574 -1.2145 4.5933 38 1 3.5775 1.2399 4.9239 39 1 3.4723 0.0097 6.2097 40 1 7.7691 -0.0381 6.2060 41 1 8.9498 -2.1727 6.5098 42 1 7.8097 -4.2947 5.9947 43 1 5.4898 -4.2785 5.1807 44 1 3.8027 -2.9127 3.9373 45 1 3.2294 -2.4514 5.5571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332734720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:28 Heat of formation + Delta-G solvation = -89.078475 kcal Electronic energy + Delta-G solvation = -28200.728411 eV Core-core repulsion = 24310.416012 eV Total energy + Delta-G solvation = -3890.312398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90670 -37.80635 -36.66693 -36.32631 -36.08505 -35.38108 -32.55900 -31.70046 -30.49719 -29.19460 -26.71460 -25.98440 -25.75250 -25.25963 -23.53024 -22.64085 -20.53295 -19.67084 -18.90989 -18.01704 -17.47559 -17.03871 -16.10500 -16.02145 -15.75879 -15.39627 -14.99601 -14.78422 -14.73764 -14.51478 -14.06336 -13.68330 -13.46602 -13.30587 -13.10159 -13.02678 -12.54847 -12.17893 -12.14202 -11.99238 -11.78632 -11.63602 -11.52099 -11.22612 -11.09997 -11.03273 -10.93077 -10.83036 -10.74559 -10.41271 -10.31696 -10.15101 -9.75300 -9.68832 -9.39099 -9.02191 -8.72829 -8.42874 -8.34012 -6.06300 -4.18435 0.74033 1.08211 1.22051 2.91052 3.24108 3.25026 3.31629 3.33587 3.53789 4.14606 4.31756 4.34681 4.43208 4.47716 4.59054 4.72524 4.81117 4.87369 5.10787 5.18501 5.20586 5.21381 5.28996 5.40443 5.52598 5.60835 5.64470 5.73916 5.78897 5.89746 6.07428 6.23219 6.30625 6.32189 6.56179 6.66109 6.75627 6.85631 6.91799 7.01972 7.27812 7.28031 7.46704 7.65085 7.94968 8.06094 8.29569 8.80017 9.47245 10.95064 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.003351 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.427412 B = 8353.132511 C = 9456.497189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.581 4.581 13 S 2.590 3.410 14 O -0.961 6.961 15 O -0.960 6.960 16 N -1.120 6.120 17 C 0.120 3.880 18 H 0.101 0.899 19 C 0.045 3.955 20 O -0.308 6.308 21 C 0.130 3.870 22 C -0.149 4.149 23 C -0.089 4.089 24 C -0.154 4.154 25 C -0.082 4.082 26 C -0.158 4.158 27 C -0.085 4.085 28 H 0.027 0.973 29 H 0.096 0.904 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.414 0.586 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.093 0.907 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.093 -7.141 17.528 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.715 4.715 13 S 2.688 3.312 14 O -0.951 6.951 15 O -0.950 6.950 16 N -0.877 5.877 17 C 0.012 3.988 18 H 0.119 0.881 19 C -0.031 4.031 20 O -0.220 6.220 21 C 0.085 3.915 22 C -0.167 4.167 23 C -0.107 4.107 24 C -0.173 4.173 25 C -0.100 4.100 26 C -0.159 4.159 27 C -0.123 4.123 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.247 0.753 38 H 0.144 0.856 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.111 0.889 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.663 -5.928 17.382 20.306 hybrid contribution 0.296 -1.476 -0.915 1.762 sum 8.959 -7.404 16.467 20.156 Atomic orbital electron populations 1.22284 0.96898 1.00653 1.02355 1.17932 0.92821 0.92239 0.88965 1.22280 0.99757 0.97738 1.02399 1.20931 1.31808 1.12118 0.89376 0.92307 1.24937 0.94871 0.94958 0.98947 1.69799 1.36285 1.22504 1.23526 0.86531 0.79187 0.79387 0.82515 1.20636 1.21092 1.19944 1.30529 1.11223 1.12944 1.16777 1.05809 0.74449 0.75322 0.75614 1.93566 1.29270 1.86610 1.85672 1.93553 1.78019 1.37986 1.85424 1.55954 1.12714 1.71106 1.47899 1.21292 0.81377 0.95775 1.00374 0.88105 1.23650 0.77870 1.02470 0.99159 1.86094 1.21568 1.26966 1.87416 1.18828 0.92721 0.84458 0.95509 1.20621 0.93082 0.99241 1.03779 1.20941 0.99595 0.91705 0.98424 1.21015 0.95216 0.98240 1.02801 1.20904 0.94545 0.96793 0.97780 1.19773 0.97138 0.93040 1.05979 1.20830 0.92571 0.97174 1.01762 0.95410 0.88574 0.94447 0.94438 0.88611 0.95298 0.92706 0.86501 0.86133 0.75305 0.85617 0.91308 0.85137 0.85478 0.85897 0.85690 0.88879 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 4 C -0.50 -13.04 8.01 -34.44 -0.28 -13.31 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.91 9.35 55.43 0.52 -23.39 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 C -0.58 -10.91 4.90 37.16 0.18 -10.72 16 13 S 2.59 45.21 4.42 -107.50 -0.47 44.73 16 14 O -0.96 -19.22 15.70 -57.54 -0.90 -20.13 16 15 O -0.96 -18.99 14.84 -57.54 -0.85 -19.84 16 16 N -1.12 -13.77 5.38 -4.68 -0.03 -13.80 16 17 C 0.12 1.41 2.79 -67.68 -0.19 1.23 16 18 H 0.10 1.26 7.18 -51.93 -0.37 0.89 16 19 C 0.05 0.54 6.64 37.37 0.25 0.79 16 20 O -0.31 -4.02 10.28 -19.28 -0.20 -4.21 16 21 C 0.13 1.55 6.47 -39.20 -0.25 1.30 16 22 C -0.15 -1.55 9.94 -39.34 -0.39 -1.94 16 23 C -0.09 -0.77 10.04 -39.66 -0.40 -1.17 16 24 C -0.15 -1.32 10.04 -39.61 -0.40 -1.71 16 25 C -0.08 -0.75 9.67 -39.53 -0.38 -1.14 16 26 C -0.16 -1.68 5.75 -104.44 -0.60 -2.28 16 27 C -0.09 -0.81 5.41 -27.81 -0.15 -0.96 16 28 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 29 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 33 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.12 1.99 7.46 -51.92 -0.39 1.61 16 36 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 37 H 0.41 4.04 8.79 -34.47 -0.30 3.74 16 38 H 0.13 1.63 7.54 -51.93 -0.39 1.23 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -31.80 362.85 -10.11 -41.91 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.42 Total: 7.58 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: -2.20 Total: -33.80 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.49 Total: -37.19 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -1.96 Total: -44.18 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.47 Total: 44.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.80 -10.11 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332734720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.168 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds