Wall clock time and date at job start Tue Mar 31 2020 22:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 C 1.50695 * 109.47333 * 239.99963 * 2 1 3 5 5 H 1.07995 * 120.00224 * 240.00261 * 4 2 1 6 6 C 1.37880 * 119.99764 * 59.99532 * 4 2 1 7 7 N 1.31516 * 120.00036 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47224 * 90.00346 * 8 6 4 10 10 H 1.48496 * 109.47332 * 210.00368 * 8 6 4 11 11 H 1.48507 * 109.47101 * 330.00745 * 8 6 4 12 12 C 1.52999 * 109.46864 * 119.99761 * 2 1 3 13 13 S 1.81403 * 109.47470 * 299.99853 * 12 2 1 14 14 O 1.42098 * 110.53926 * 68.37674 * 13 12 2 15 15 O 1.42101 * 110.54324 * 291.62358 * 13 12 2 16 16 N 1.65601 * 104.44987 * 180.02562 * 13 12 2 17 17 C 1.46506 * 119.99770 * 64.99859 * 16 13 12 18 18 H 1.08997 * 109.69255 * 335.55360 * 17 16 13 19 19 C 1.53405 * 109.72173 * 96.12742 * 17 16 13 20 20 O 1.42831 * 108.37479 * 184.41121 * 19 17 16 21 21 C 1.35855 * 117.77235 * 310.48060 * 20 19 17 22 22 C 1.39144 * 118.49515 * 196.82947 * 21 20 19 23 23 C 1.37973 * 120.21556 * 180.72505 * 22 21 20 24 24 C 1.38293 * 119.95552 * 0.26685 * 23 22 21 25 25 C 1.38107 * 119.98337 * 359.89042 * 24 23 22 26 26 C 1.38370 * 121.79955 * 17.95067 * 21 20 19 27 27 C 1.50775 * 121.40187 * 358.75599 * 26 21 20 28 28 H 1.09007 * 109.46665 * 300.00160 * 1 2 3 29 29 H 1.08997 * 109.47178 * 59.99867 * 1 2 3 30 30 H 1.08999 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46858 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47289 * 300.00065 * 3 2 1 33 33 H 1.09002 * 109.47105 * 60.00269 * 3 2 1 34 34 H 0.96998 * 119.99402 * 179.97438 * 7 6 4 35 35 H 1.09008 * 109.47022 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.47141 * 60.00645 * 12 2 1 37 37 H 0.96994 * 119.99766 * 245.00173 * 16 13 12 38 38 H 1.09001 * 109.68063 * 304.12533 * 19 17 16 39 39 H 1.08991 * 109.68640 * 64.69128 * 19 17 16 40 40 H 1.08002 * 119.89570 * 1.00949 * 22 21 20 41 41 H 1.07997 * 120.02385 * 180.23978 * 23 22 21 42 42 H 1.07996 * 120.00593 * 179.91790 * 24 23 22 43 43 H 1.08007 * 119.83817 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.43177 * 138.23309 * 27 26 21 45 45 H 1.08993 * 109.43148 * 258.09810 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 6 2.0399 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0280 -0.0182 2.8544 15 8 2.0480 1.4101 2.8545 16 7 2.0541 -0.7399 3.9937 17 6 3.5027 -0.7962 4.2054 18 1 4.0191 -0.6052 3.2647 19 6 3.9152 0.2543 5.2444 20 8 5.3394 0.2456 5.3525 21 6 5.9540 -0.9540 5.5226 22 6 7.2681 -0.9678 5.9799 23 6 7.9312 -2.1655 6.1510 24 6 7.2909 -3.3568 5.8623 25 6 5.9877 -3.3467 5.4051 26 6 5.3167 -2.1475 5.2324 27 6 3.8929 -2.1775 4.7370 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 0.7094 1.1617 -3.4844 35 1 3.1300 -0.7216 1.2491 36 1 1.6767 -1.7489 1.2493 37 1 1.4574 -1.2145 4.5933 38 1 3.5775 1.2399 4.9239 39 1 3.4723 0.0097 6.2097 40 1 7.7691 -0.0381 6.2060 41 1 8.9498 -2.1727 6.5098 42 1 7.8097 -4.2947 5.9947 43 1 5.4898 -4.2785 5.1807 44 1 3.8027 -2.9127 3.9373 45 1 3.2294 -2.4514 5.5571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332734720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:27 Heat of formation + Delta-G solvation = -109.688061 kcal Electronic energy + Delta-G solvation = -28201.622109 eV Core-core repulsion = 24310.416012 eV Total energy + Delta-G solvation = -3891.206097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71005 -38.59651 -38.14140 -38.11781 -37.10252 -36.87969 -33.65213 -33.36552 -31.22520 -30.07594 -28.34858 -27.69617 -27.25740 -26.77947 -24.36631 -23.36781 -21.59367 -21.14065 -20.34555 -18.91454 -18.76041 -17.99508 -17.86679 -17.06234 -16.87411 -16.76034 -16.56188 -16.11812 -15.61290 -15.38501 -15.04655 -14.81733 -14.70148 -14.51855 -14.43363 -14.20590 -14.01019 -13.85221 -13.40465 -13.06438 -12.98360 -12.89790 -12.82607 -12.76250 -12.57805 -12.52712 -12.39101 -12.19360 -12.15314 -11.99281 -11.73773 -11.70087 -11.56519 -11.38365 -10.72666 -10.44465 -10.41232 -9.71220 -9.10709 -8.03755 -6.22265 -0.67518 0.38818 0.49424 1.43524 1.45650 1.53966 1.73189 2.35820 2.43703 2.78592 2.83139 3.18411 3.25930 3.46872 3.55272 3.75728 3.79919 3.99260 4.01639 4.15868 4.26749 4.34623 4.39652 4.51937 4.58234 4.59436 4.66375 4.73772 4.84160 4.86094 4.95678 4.97546 5.01685 5.08027 5.13378 5.37446 5.38272 5.50337 5.53892 5.63228 5.64316 5.89271 5.97436 6.04423 6.11200 6.33615 6.47158 6.82600 7.46193 8.96079 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.003351 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.427412 B = 8353.132511 C = 9456.497189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.268 1.268 12 C -0.587 4.587 13 S 2.613 3.387 14 O -0.986 6.986 15 O -0.986 6.986 16 N -1.098 6.098 17 C 0.116 3.884 18 H 0.091 0.909 19 C 0.042 3.958 20 O -0.327 6.327 21 C 0.098 3.902 22 C -0.165 4.165 23 C -0.090 4.090 24 C -0.154 4.154 25 C -0.088 4.088 26 C -0.168 4.168 27 C -0.080 4.080 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.429 0.571 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.107 0.893 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -9.749 18.757 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 C -0.218 4.218 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.192 1.192 12 C -0.720 4.720 13 S 2.710 3.290 14 O -0.976 6.976 15 O -0.976 6.976 16 N -0.859 5.859 17 C 0.008 3.992 18 H 0.109 0.891 19 C -0.035 4.035 20 O -0.241 6.241 21 C 0.054 3.946 22 C -0.183 4.183 23 C -0.108 4.108 24 C -0.172 4.172 25 C -0.106 4.106 26 C -0.169 4.169 27 C -0.119 4.119 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.266 0.734 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.167 0.833 43 H 0.165 0.835 44 H 0.125 0.875 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.897 -8.551 18.612 22.748 hybrid contribution -0.008 -0.684 -1.207 1.387 sum 9.889 -9.235 17.405 22.046 Atomic orbital electron populations 1.22218 0.97669 1.00600 1.01386 1.17909 0.92372 0.92079 0.90844 1.22210 0.99714 0.98449 1.01430 1.21296 1.31650 1.12295 0.90414 0.91872 1.25672 0.95202 0.95638 1.01672 1.69943 1.37219 1.23630 1.23837 0.85627 0.78877 0.78275 0.79271 1.20284 1.21335 1.19216 1.30469 1.12352 1.13675 1.15485 1.04811 0.73525 0.74904 0.75723 1.93525 1.31031 1.86965 1.86125 1.93522 1.78344 1.39856 1.85828 1.55356 1.13480 1.70666 1.46430 1.21404 0.80226 0.97458 1.00113 0.89114 1.23632 0.77969 1.01744 1.00133 1.86053 1.21849 1.28153 1.88010 1.19156 0.93548 0.84548 0.97370 1.20863 0.92967 1.00296 1.04207 1.21284 1.00664 0.91157 0.97661 1.21408 0.95120 0.99207 1.01468 1.21225 0.94942 0.97074 0.97310 1.19949 0.97664 0.93128 1.06179 1.20855 0.92483 0.95641 1.02872 0.94828 0.91078 0.93953 0.94305 0.91118 0.94697 0.92939 0.84922 0.84051 0.73372 0.87306 0.89466 0.84943 0.83018 0.83317 0.83463 0.87496 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.86 7.78 71.98 0.56 -7.30 16 2 C 0.07 3.32 0.52 -52.93 -0.03 3.29 16 3 C -0.16 -7.89 7.78 71.98 0.56 -7.33 16 4 C -0.52 -26.61 8.01 25.60 0.21 -26.40 16 5 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 6 C 0.02 0.93 5.15 84.66 0.44 1.36 16 7 N -0.91 -50.05 9.35 21.45 0.20 -49.85 16 8 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 C -0.59 -21.28 4.90 71.98 0.35 -20.93 16 13 S 2.61 88.68 4.42 -56.49 -0.25 88.43 16 14 O -0.99 -38.52 15.70 -127.65 -2.00 -40.52 16 15 O -0.99 -38.87 14.84 -127.65 -1.89 -40.77 16 16 N -1.10 -24.87 5.38 -168.72 -0.91 -25.77 16 17 C 0.12 2.54 2.79 45.15 0.13 2.67 16 18 H 0.09 2.18 7.18 -2.39 -0.02 2.16 16 19 C 0.04 0.98 6.64 72.12 0.48 1.46 16 20 O -0.33 -8.55 10.28 -91.92 -0.94 -9.49 16 21 C 0.10 2.27 6.47 22.52 0.15 2.41 16 22 C -0.16 -3.28 9.94 22.42 0.22 -3.05 16 23 C -0.09 -1.35 10.04 22.22 0.22 -1.13 16 24 C -0.15 -2.13 10.04 22.25 0.22 -1.91 16 25 C -0.09 -1.34 9.67 22.30 0.22 -1.13 16 26 C -0.17 -3.22 5.75 -19.75 -0.11 -3.33 16 27 C -0.08 -1.31 5.41 29.89 0.16 -1.15 16 28 H 0.03 1.55 5.46 -2.38 -0.01 1.54 16 29 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 33 H 0.03 1.63 5.46 -2.39 -0.01 1.61 16 34 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.13 4.33 7.46 -2.39 -0.02 4.31 16 36 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 37 H 0.43 7.24 8.79 -96.75 -0.85 6.39 16 38 H 0.11 2.86 7.54 -2.39 -0.02 2.84 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 44 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.11 1.30 8.12 -2.39 -0.02 1.28 16 Total: -1.00 -68.84 362.85 0.15 -68.68 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.16 Total: 27.86 kcal Atomic # 6 Polarization: -66.24 SS G_CDS: 3.77 Total: -62.47 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -0.71 Total: -75.63 kcal Atomic # 8 Polarization: -85.94 SS G_CDS: -4.84 Total: -90.78 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 88.68 SS G_CDS: -0.25 Total: 88.43 kcal Total: -68.84 0.15 -68.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332734720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.003 kcal (2) G-P(sol) polarization free energy of solvation -68.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds