Wall clock time and date at job start Tue Mar 31 2020 22:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47040 * 2 1 4 4 C 1.50698 * 109.47209 * 239.99521 * 2 1 3 5 5 H 1.07990 * 120.00404 * 240.83795 * 4 2 1 6 6 C 1.37884 * 119.99492 * 60.83739 * 4 2 1 7 7 N 1.31523 * 119.99463 * 194.57648 * 6 4 2 8 8 Si 1.86794 * 120.00431 * 14.57966 * 6 4 2 9 9 H 1.48496 * 109.47055 * 84.45054 * 8 6 4 10 10 H 1.48500 * 109.47278 * 204.45237 * 8 6 4 11 11 H 1.48506 * 109.46959 * 324.45081 * 8 6 4 12 12 C 1.53000 * 109.46822 * 119.99562 * 2 1 3 13 13 S 1.81399 * 109.47152 * 300.00091 * 12 2 1 14 14 O 1.42100 * 110.54346 * 68.37958 * 13 12 2 15 15 O 1.42097 * 110.54378 * 291.62032 * 13 12 2 16 16 N 1.65603 * 104.44586 * 179.97438 * 13 12 2 17 17 C 1.46501 * 120.00188 * 65.00534 * 16 13 12 18 18 H 1.08994 * 109.72820 * 24.41476 * 17 16 13 19 19 C 1.53315 * 109.64032 * 263.87841 * 17 16 13 20 20 O 1.42833 * 108.34245 * 175.53800 * 19 17 16 21 21 C 1.35836 * 117.84974 * 49.20760 * 20 19 17 22 22 C 1.39142 * 118.49575 * 162.91932 * 21 20 19 23 23 C 1.37970 * 120.21943 * 179.76909 * 22 21 20 24 24 C 1.38288 * 119.95404 * 359.97438 * 23 22 21 25 25 C 1.38108 * 119.98517 * 0.06746 * 24 23 22 26 26 C 1.38371 * 121.81179 * 342.81941 * 21 20 19 27 27 C 1.50774 * 121.40805 * 0.35363 * 26 21 20 28 28 H 1.09000 * 109.47023 * 310.24084 * 1 2 3 29 29 H 1.09002 * 109.46618 * 70.23619 * 1 2 3 30 30 H 1.08998 * 109.47237 * 190.23300 * 1 2 3 31 31 H 1.08997 * 109.46972 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46987 * 299.99644 * 3 2 1 33 33 H 1.08996 * 109.47446 * 59.99786 * 3 2 1 34 34 H 0.96997 * 119.99639 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46695 * 179.97438 * 12 2 1 36 36 H 1.09003 * 109.47010 * 60.00438 * 12 2 1 37 37 H 0.97001 * 120.00261 * 244.99718 * 16 13 12 38 38 H 1.08997 * 109.70438 * 55.82104 * 19 17 16 39 39 H 1.08995 * 109.71656 * 295.26197 * 19 17 16 40 40 H 1.08005 * 119.89190 * 359.79210 * 22 21 20 41 41 H 1.08001 * 120.02402 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.00674 * 180.09299 * 24 23 22 43 43 H 1.08002 * 119.83595 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.43851 * 102.37767 * 27 26 21 45 45 H 1.08995 * 109.43844 * 222.29386 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6421 -1.5963 -1.1313 6 6 1.7136 -0.2294 -2.4826 7 7 1.8970 -0.9849 -3.5435 8 14 1.0213 1.4951 -2.6724 9 1 2.1372 2.4735 -2.7241 10 1 0.2329 1.5766 -3.9282 11 1 0.1434 1.8061 -1.5157 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1341 2.7303 14 8 0.0279 -0.0182 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0529 -0.7406 3.9936 17 6 3.5013 -0.7980 4.2061 18 1 3.9731 0.0792 3.7634 19 6 4.0667 -2.0692 3.5621 20 8 5.4887 -2.0456 3.6939 21 6 6.0080 -1.7786 4.9203 22 6 7.3406 -2.0985 5.1610 23 6 7.9057 -1.8384 6.3925 24 6 7.1466 -1.2573 7.3917 25 6 5.8233 -0.9393 7.1567 26 6 5.2500 -1.2003 5.9232 27 6 3.8013 -0.8432 5.7064 28 1 -0.3633 0.6639 0.7845 29 1 -0.3633 0.3475 -0.9672 30 1 -0.3633 -1.0113 0.1826 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6730 -0.6464 -4.4245 35 1 3.1300 -0.7216 1.2491 36 1 1.6767 -1.7489 1.2493 37 1 1.4557 -1.2150 4.5930 38 1 3.7962 -2.0980 2.5066 39 1 3.6656 -2.9474 4.0680 40 1 7.9347 -2.5516 4.3811 41 1 8.9403 -2.0883 6.5759 42 1 7.5885 -1.0519 8.3555 43 1 5.2325 -0.4859 7.9389 44 1 3.1680 -1.5931 6.1805 45 1 3.5987 0.1332 6.1464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332734750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:32 Heat of formation + Delta-G solvation = -68.766722 kcal Electronic energy + Delta-G solvation = -28360.362653 eV Core-core repulsion = 24470.931039 eV Total energy + Delta-G solvation = -3889.431615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96544 -37.86333 -36.84048 -36.79211 -36.16550 -35.57180 -32.63192 -31.98514 -30.54744 -29.25012 -27.62634 -26.42864 -25.97584 -25.05248 -23.58256 -22.67342 -20.57545 -20.00689 -19.01836 -18.05561 -17.71496 -17.08640 -16.24845 -16.11931 -15.97365 -15.64250 -15.25677 -15.13704 -14.74621 -14.56371 -14.11872 -13.76272 -13.56472 -13.45329 -13.28810 -13.16455 -12.91645 -12.52712 -12.37824 -12.13807 -11.97111 -11.84604 -11.67850 -11.65580 -11.53345 -11.16310 -11.14121 -11.04624 -10.90866 -10.77632 -10.21374 -10.09615 -10.08372 -9.62478 -9.07321 -9.05085 -8.78284 -8.50421 -8.37816 -6.22001 -4.19734 0.55612 1.05251 1.18749 2.75828 3.16048 3.23502 3.32467 3.37153 3.50799 4.00518 4.22652 4.28682 4.31708 4.45463 4.55732 4.57527 4.79319 4.83811 5.03452 5.07526 5.11353 5.16750 5.24733 5.26840 5.31673 5.40102 5.52152 5.64036 5.74430 5.80975 5.93874 6.03902 6.14042 6.19670 6.27488 6.27711 6.38309 6.44176 6.52537 6.65300 6.81941 6.85079 7.08783 7.22771 7.26900 7.58773 8.35296 8.80636 9.41759 10.90456 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.003309 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.369649 B = 8460.505306 C = 9303.680015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.056 3.944 3 C -0.183 4.183 4 C -0.509 4.509 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.873 3.127 9 H -0.280 1.280 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.579 4.579 13 S 2.587 3.413 14 O -0.959 6.959 15 O -0.960 6.960 16 N -1.117 6.117 17 C 0.113 3.887 18 H 0.110 0.890 19 C 0.036 3.964 20 O -0.305 6.305 21 C 0.131 3.869 22 C -0.147 4.147 23 C -0.088 4.088 24 C -0.154 4.154 25 C -0.083 4.083 26 C -0.158 4.158 27 C -0.080 4.080 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.266 0.734 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.415 0.585 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 -2.600 21.333 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.053 3.947 3 C -0.239 4.239 4 C -0.548 4.548 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.705 3.295 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.712 4.712 13 S 2.684 3.316 14 O -0.949 6.949 15 O -0.950 6.950 16 N -0.874 5.874 17 C 0.005 3.995 18 H 0.128 0.872 19 C -0.041 4.041 20 O -0.218 6.218 21 C 0.085 3.915 22 C -0.166 4.166 23 C -0.106 4.106 24 C -0.172 4.172 25 C -0.101 4.101 26 C -0.159 4.159 27 C -0.118 4.118 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.249 0.751 38 H 0.137 0.863 39 H 0.093 0.907 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.104 0.896 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.925 -1.788 20.949 22.137 hybrid contribution -0.326 0.186 -0.206 0.428 sum 6.599 -1.603 20.743 21.826 Atomic orbital electron populations 1.22691 0.96980 1.01357 1.01834 1.18222 0.92517 0.91703 0.92222 1.22831 1.02452 0.97829 1.00824 1.20637 1.34039 1.12646 0.87467 0.90295 1.24962 0.94524 0.97262 0.95794 1.69935 1.47761 1.35756 0.98918 0.87449 0.79818 0.85709 0.76533 1.20763 1.22896 1.17209 1.30512 1.11801 1.13222 1.15651 1.05834 0.74541 0.75383 0.75794 1.93582 1.29082 1.86558 1.85685 1.93560 1.78077 1.37916 1.85411 1.55830 1.12857 1.70968 1.47758 1.21394 0.81147 0.99501 0.97499 0.87235 1.23755 0.78307 0.98060 1.03954 1.86092 1.22623 1.85923 1.27152 1.18807 0.93120 0.95039 0.84499 1.20643 0.93268 1.04304 0.98350 1.20948 0.99750 0.97567 0.92373 1.21016 0.94347 1.02176 0.99695 1.20888 0.95162 0.98476 0.95569 1.19769 0.96365 1.04662 0.95151 1.20742 0.92393 1.03610 0.95054 0.94486 0.91351 0.92272 0.91698 0.92928 0.93235 0.92376 0.85564 0.85166 0.75107 0.86255 0.90708 0.85011 0.85421 0.85890 0.85738 0.89592 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 6.95 37.16 0.26 -3.51 16 2 C 0.06 1.25 0.52 -155.66 -0.08 1.17 16 3 C -0.18 -4.03 7.22 37.16 0.27 -3.76 16 4 C -0.51 -13.41 8.62 -34.44 -0.30 -13.71 16 5 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 6 C 0.08 2.16 5.31 -17.81 -0.09 2.07 16 7 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 8 Si 0.87 21.31 22.79 -169.99 -3.87 17.43 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.25 -5.61 4.67 56.52 0.26 -5.35 16 12 C -0.58 -10.03 4.12 37.16 0.15 -9.88 16 13 S 2.59 42.03 4.48 -107.50 -0.48 41.54 16 14 O -0.96 -17.76 15.93 -57.54 -0.92 -18.68 16 15 O -0.96 -18.01 15.03 -57.54 -0.86 -18.88 16 16 N -1.12 -12.77 5.38 -4.72 -0.03 -12.80 16 17 C 0.11 1.25 2.92 -67.73 -0.20 1.06 16 18 H 0.11 1.36 7.50 -51.93 -0.39 0.97 16 19 C 0.04 0.39 6.64 37.32 0.25 0.64 16 20 O -0.31 -3.83 10.27 -19.22 -0.20 -4.03 16 21 C 0.13 1.51 6.47 -39.20 -0.25 1.26 16 22 C -0.15 -1.50 9.94 -39.34 -0.39 -1.89 16 23 C -0.09 -0.74 10.04 -39.66 -0.40 -1.14 16 24 C -0.15 -1.25 10.04 -39.61 -0.40 -1.65 16 25 C -0.08 -0.73 9.67 -39.53 -0.38 -1.11 16 26 C -0.16 -1.62 5.75 -104.44 -0.60 -2.22 16 27 C -0.08 -0.74 5.42 -27.81 -0.15 -0.89 16 28 H 0.04 0.76 6.21 -51.93 -0.32 0.44 16 29 H 0.07 1.56 4.32 -51.93 -0.22 1.33 16 30 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.05 1.20 2.28 -51.93 -0.12 1.08 16 33 H 0.05 1.02 5.46 -51.93 -0.28 0.74 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.13 1.97 6.97 -51.93 -0.36 1.61 16 36 H 0.13 1.99 8.14 -51.92 -0.42 1.57 16 37 H 0.42 3.70 8.78 -34.48 -0.30 3.40 16 38 H 0.12 1.28 5.93 -51.93 -0.31 0.97 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -33.56 351.08 -8.84 -42.40 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.23 Total: 6.65 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: -2.32 Total: -33.56 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.75 Total: -38.17 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.98 Total: -41.59 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -3.87 Total: 17.43 kcal Atomic # 16 Polarization: 42.03 SS G_CDS: -0.48 Total: 41.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.56 -8.84 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332734750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.367 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds