Wall clock time and date at job start Tue Mar 31 2020 22:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 C 1.53002 * 109.46818 * 119.99751 * 2 1 3 5 5 S 1.81405 * 109.47146 * 65.00074 * 4 2 1 6 6 O 1.42105 * 108.57472 * 65.51188 * 5 4 2 7 7 O 1.42096 * 108.57842 * 294.48791 * 5 4 2 8 8 C 1.81397 * 101.92020 * 179.97438 * 5 4 2 9 9 C 1.53005 * 109.46939 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.46866 * 179.97438 * 9 8 5 11 11 O 1.21273 * 120.00122 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99729 * 179.97438 * 10 9 8 13 13 C 1.39230 * 120.00132 * 184.29391 * 12 10 9 14 14 C 1.39488 * 119.83491 * 324.71459 * 13 12 10 15 15 C 1.36369 * 120.16815 * 180.29701 * 14 13 12 16 16 C 1.40868 * 119.83187 * 359.48081 * 15 14 13 17 17 C 1.41157 * 120.16787 * 180.25497 * 16 15 14 18 18 H 1.07997 * 120.00057 * 215.01831 * 17 16 15 19 19 C 1.39907 * 119.99736 * 35.00954 * 17 16 15 20 20 N 1.30868 * 120.00224 * 355.54662 * 19 17 16 21 21 Si 1.86804 * 119.99669 * 175.55178 * 19 17 16 22 22 H 1.48497 * 109.47411 * 89.99814 * 21 19 17 23 23 H 1.48499 * 109.46679 * 210.00225 * 21 19 17 24 24 H 1.48503 * 109.46788 * 329.99782 * 21 19 17 25 25 C 1.40869 * 119.66984 * 0.51410 * 16 15 14 26 26 C 1.36371 * 119.83090 * 359.73785 * 25 16 15 27 27 H 1.09007 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47561 * 300.00113 * 1 2 3 29 29 H 1.09007 * 109.47068 * 60.00172 * 1 2 3 30 30 H 1.08999 * 109.47162 * 239.99821 * 2 1 3 31 31 H 1.09001 * 109.46866 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46817 * 299.99842 * 3 2 1 33 33 H 1.08999 * 109.47308 * 59.99910 * 3 2 1 34 34 H 1.08998 * 109.47238 * 304.99834 * 4 2 1 35 35 H 1.08995 * 109.47004 * 185.00137 * 4 2 1 36 36 H 1.09006 * 109.47181 * 60.00318 * 8 5 4 37 37 H 1.08996 * 109.47579 * 299.99986 * 8 5 4 38 38 H 1.09006 * 109.46747 * 60.00270 * 9 8 5 39 39 H 1.08996 * 109.47151 * 300.00464 * 9 8 5 40 40 H 0.97004 * 120.00223 * 4.29910 * 12 10 9 41 41 H 1.07997 * 119.90929 * 0.02562 * 14 13 12 42 42 H 1.08002 * 120.08447 * 179.70013 * 15 14 13 43 43 H 0.96996 * 120.00226 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.08685 * 179.71143 * 25 16 15 45 45 H 1.07996 * 119.92011 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 16 1.5600 -2.4691 1.1767 6 8 2.2381 -3.0799 0.0874 7 8 0.1433 -2.5529 1.2468 8 6 2.2550 -3.1130 2.7236 9 6 1.9431 -4.6064 2.8401 10 6 2.5210 -5.1415 4.1249 11 8 3.1226 -4.4013 4.8738 12 7 2.3684 -6.4425 4.4421 13 6 2.8235 -6.9180 5.6690 14 6 3.9876 -6.3914 6.2288 15 6 4.4428 -6.8563 7.4272 16 6 3.7282 -7.8633 8.1054 17 6 4.1901 -8.3459 9.3489 18 1 4.0604 -9.3868 9.6060 19 6 4.8160 -7.4759 10.2481 20 7 5.0516 -6.2359 9.9025 21 14 5.3153 -8.0843 11.9422 22 1 6.6978 -8.6237 11.8869 23 1 5.2617 -6.9578 12.9083 24 1 4.3833 -9.1551 12.3781 25 6 2.5534 -8.3901 7.5338 26 6 2.1133 -7.9188 6.3321 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1262 -0.6443 1.2953 36 1 1.8143 -2.5833 3.5682 37 1 3.3350 -2.9658 2.7258 38 1 2.3835 -5.1365 1.9955 39 1 0.8631 -4.7533 2.8380 40 1 1.9415 -7.0477 3.8156 41 1 4.5321 -5.6166 5.7096 42 1 5.3469 -6.4511 7.8571 43 1 5.4852 -5.6326 10.5261 44 1 2.0029 -9.1656 8.0456 45 1 1.2131 -8.3219 5.8924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338163039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:22 Heat of formation + Delta-G solvation = -99.361031 kcal Electronic energy + Delta-G solvation = -26261.374677 eV Core-core repulsion = 22370.616393 eV Total energy + Delta-G solvation = -3890.758283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.79560 -37.38032 -37.29331 -36.87394 -36.16320 -34.54795 -33.33118 -32.84075 -29.55989 -29.07938 -28.44379 -27.60010 -25.92763 -24.20155 -21.52858 -21.09363 -20.72087 -19.62092 -19.15393 -17.70503 -17.32285 -16.78382 -16.67582 -16.48221 -15.77620 -15.62692 -15.15911 -15.03212 -14.39570 -14.03290 -13.88826 -13.75932 -13.59631 -13.01170 -12.95638 -12.75914 -12.65985 -12.58259 -12.47823 -12.24245 -12.13166 -11.85892 -11.83439 -11.59743 -11.51109 -11.46119 -11.31334 -11.18661 -11.14001 -10.95101 -10.54397 -10.47788 -9.99028 -9.91722 -9.53617 -9.05615 -8.80038 -7.56440 -6.93332 -6.62532 -4.36369 -0.34097 2.43797 2.50149 2.95792 3.05680 3.08735 3.12166 3.16857 3.29817 3.69219 3.71121 3.96573 4.05783 4.23253 4.24893 4.51379 4.56964 4.69249 4.83462 4.91381 5.04049 5.10756 5.23086 5.26169 5.31212 5.40933 5.48185 5.57576 5.63376 5.63741 5.77514 5.92902 6.10456 6.34670 6.73332 6.94476 7.01183 7.16453 7.25871 7.59632 7.62887 7.92338 8.06211 8.13373 8.29817 8.62678 8.68189 8.90411 8.97477 10.28472 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.001966 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.175247 B =14237.865255 C =14956.682196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.608 4.608 5 S 2.413 3.587 6 O -0.938 6.938 7 O -0.934 6.934 8 C -0.593 4.593 9 C -0.133 4.133 10 C 0.505 3.495 11 O -0.525 6.525 12 N -0.651 5.651 13 C 0.001 3.999 14 C -0.093 4.093 15 C -0.145 4.145 16 C 0.100 3.900 17 C -0.462 4.462 18 H 0.076 0.924 19 C 0.068 3.932 20 N -0.808 5.808 21 Si 0.916 3.084 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.203 4.203 26 C -0.112 4.112 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.397 0.603 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.278 0.722 44 H 0.097 0.903 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 11.331 -17.237 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.738 4.738 5 S 2.597 3.403 6 O -0.936 6.936 7 O -0.931 6.931 8 C -0.722 4.722 9 C -0.174 4.174 10 C 0.290 3.710 11 O -0.401 6.401 12 N -0.294 5.294 13 C -0.091 4.091 14 C -0.113 4.113 15 C -0.165 4.165 16 C 0.098 3.902 17 C -0.493 4.493 18 H 0.094 0.906 19 C -0.147 4.147 20 N -0.434 5.434 21 Si 0.741 3.259 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.223 4.223 26 C -0.132 4.132 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.231 0.769 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.755 11.647 -17.259 21.602 hybrid contribution 0.431 0.043 1.279 1.350 sum -5.323 11.691 -15.980 20.503 Atomic orbital electron populations 1.22369 0.93767 1.04826 1.03108 1.20850 0.96841 0.97766 0.94831 1.21814 1.01266 0.94469 1.02421 1.30398 1.12168 1.23559 1.07643 1.08199 0.76287 0.78285 0.77532 1.93592 1.76192 1.74163 1.49617 1.93570 1.27321 1.85653 1.86559 1.30102 1.14670 1.05501 1.21953 1.21340 1.03946 0.92912 0.99176 1.20134 0.81186 0.82367 0.87324 1.90709 1.40901 1.57236 1.51254 1.42960 1.59513 1.08674 1.18235 1.17288 0.98873 1.04055 0.88897 1.20634 0.94334 0.99239 0.97120 1.21302 1.01404 1.00572 0.93216 1.17743 0.89531 0.91108 0.91857 1.19488 1.33200 0.96727 0.99860 0.90593 1.25905 0.93393 0.94554 1.00842 1.69783 1.32464 1.04904 1.36284 0.86193 0.79538 0.79192 0.81013 1.19511 1.20298 1.18739 1.20697 0.98740 1.05606 0.97294 1.20089 0.98110 0.98983 0.96027 0.89953 0.91590 0.91513 0.89634 0.92223 0.91936 0.92150 0.84620 0.84696 0.84064 0.84148 0.87529 0.87395 0.76941 0.87494 0.85189 0.91063 0.88466 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 8.83 37.16 0.33 -1.02 16 2 C -0.08 -0.57 2.92 -90.62 -0.26 -0.83 16 3 C -0.14 -0.78 9.19 37.16 0.34 -0.44 16 4 C -0.61 -3.70 5.26 37.16 0.20 -3.51 16 5 S 2.41 21.04 4.51 -107.50 -0.49 20.55 16 6 O -0.94 -11.04 18.10 -57.83 -1.05 -12.09 16 7 O -0.93 -10.48 15.46 -57.83 -0.89 -11.38 16 8 C -0.59 -5.59 5.09 37.16 0.19 -5.40 16 9 C -0.13 -1.48 5.71 -27.88 -0.16 -1.64 16 10 C 0.50 8.36 7.66 -10.99 -0.08 8.28 16 11 O -0.52 -10.84 13.40 5.56 0.07 -10.77 16 12 N -0.65 -11.00 5.30 -9.74 -0.05 -11.05 16 13 C 0.00 0.02 6.31 -83.57 -0.53 -0.51 16 14 C -0.09 -2.29 8.61 -39.79 -0.34 -2.63 16 15 C -0.14 -3.85 8.61 -39.26 -0.34 -4.19 16 16 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 17 C -0.46 -12.25 9.02 -37.85 -0.34 -12.59 16 18 H 0.08 1.92 7.85 -52.49 -0.41 1.50 16 19 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 20 N -0.81 -21.38 10.61 55.55 0.59 -20.79 16 21 Si 0.92 18.99 29.56 -169.99 -5.03 13.97 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 25 C -0.20 -4.87 9.74 -39.26 -0.38 -5.25 16 26 C -0.11 -2.41 9.90 -39.79 -0.39 -2.80 16 27 H 0.08 0.73 5.41 -51.93 -0.28 0.45 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.13 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.14 1.24 8.10 -51.92 -0.42 0.82 16 37 H 0.14 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.40 5.05 8.82 -40.82 -0.36 4.69 16 41 H 0.11 2.61 6.22 -52.49 -0.33 2.29 16 42 H 0.13 3.62 6.15 -52.49 -0.32 3.29 16 43 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 44 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 45 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -35.22 382.57 -10.29 -45.51 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -6.75 Total: 9.11 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -2.47 Total: -28.82 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.54 Total: -31.85 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -1.87 Total: -34.23 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Atomic # 16 Polarization: 21.04 SS G_CDS: -0.49 Total: 20.55 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.22 -10.29 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338163039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.855 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds