Wall clock time and date at job start Tue Mar 31 2020 22:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 C 1.53002 * 109.46818 * 119.99751 * 2 1 3 5 5 S 1.81405 * 109.47146 * 65.00074 * 4 2 1 6 6 O 1.42105 * 108.57472 * 65.51188 * 5 4 2 7 7 O 1.42096 * 108.57842 * 294.48791 * 5 4 2 8 8 C 1.81397 * 101.92020 * 179.97438 * 5 4 2 9 9 C 1.53005 * 109.46939 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.46866 * 179.97438 * 9 8 5 11 11 O 1.21273 * 120.00122 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99729 * 179.97438 * 10 9 8 13 13 C 1.39230 * 120.00132 * 184.29391 * 12 10 9 14 14 C 1.39488 * 119.83491 * 324.71459 * 13 12 10 15 15 C 1.36369 * 120.16815 * 180.29701 * 14 13 12 16 16 C 1.40868 * 119.83187 * 359.48081 * 15 14 13 17 17 C 1.41157 * 120.16787 * 180.25497 * 16 15 14 18 18 H 1.07997 * 120.00057 * 215.01831 * 17 16 15 19 19 C 1.39907 * 119.99736 * 35.00954 * 17 16 15 20 20 N 1.30868 * 120.00224 * 355.54662 * 19 17 16 21 21 Si 1.86804 * 119.99669 * 175.55178 * 19 17 16 22 22 H 1.48497 * 109.47411 * 89.99814 * 21 19 17 23 23 H 1.48499 * 109.46679 * 210.00225 * 21 19 17 24 24 H 1.48503 * 109.46788 * 329.99782 * 21 19 17 25 25 C 1.40869 * 119.66984 * 0.51410 * 16 15 14 26 26 C 1.36371 * 119.83090 * 359.73785 * 25 16 15 27 27 H 1.09007 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47561 * 300.00113 * 1 2 3 29 29 H 1.09007 * 109.47068 * 60.00172 * 1 2 3 30 30 H 1.08999 * 109.47162 * 239.99821 * 2 1 3 31 31 H 1.09001 * 109.46866 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46817 * 299.99842 * 3 2 1 33 33 H 1.08999 * 109.47308 * 59.99910 * 3 2 1 34 34 H 1.08998 * 109.47238 * 304.99834 * 4 2 1 35 35 H 1.08995 * 109.47004 * 185.00137 * 4 2 1 36 36 H 1.09006 * 109.47181 * 60.00318 * 8 5 4 37 37 H 1.08996 * 109.47579 * 299.99986 * 8 5 4 38 38 H 1.09006 * 109.46747 * 60.00270 * 9 8 5 39 39 H 1.08996 * 109.47151 * 300.00464 * 9 8 5 40 40 H 0.97004 * 120.00223 * 4.29910 * 12 10 9 41 41 H 1.07997 * 119.90929 * 0.02562 * 14 13 12 42 42 H 1.08002 * 120.08447 * 179.70013 * 15 14 13 43 43 H 0.96996 * 120.00226 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.08685 * 179.71143 * 25 16 15 45 45 H 1.07996 * 119.92011 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 16 1.5600 -2.4691 1.1767 6 8 2.2381 -3.0799 0.0874 7 8 0.1433 -2.5529 1.2468 8 6 2.2550 -3.1130 2.7236 9 6 1.9431 -4.6064 2.8401 10 6 2.5210 -5.1415 4.1249 11 8 3.1226 -4.4013 4.8738 12 7 2.3684 -6.4425 4.4421 13 6 2.8235 -6.9180 5.6690 14 6 3.9876 -6.3914 6.2288 15 6 4.4428 -6.8563 7.4272 16 6 3.7282 -7.8633 8.1054 17 6 4.1901 -8.3459 9.3489 18 1 4.0604 -9.3868 9.6060 19 6 4.8160 -7.4759 10.2481 20 7 5.0516 -6.2359 9.9025 21 14 5.3153 -8.0843 11.9422 22 1 6.6978 -8.6237 11.8869 23 1 5.2617 -6.9578 12.9083 24 1 4.3833 -9.1551 12.3781 25 6 2.5534 -8.3901 7.5338 26 6 2.1133 -7.9188 6.3321 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1262 -0.6443 1.2953 36 1 1.8143 -2.5833 3.5682 37 1 3.3350 -2.9658 2.7258 38 1 2.3835 -5.1365 1.9955 39 1 0.8631 -4.7533 2.8380 40 1 1.9415 -7.0477 3.8156 41 1 4.5321 -5.6166 5.7096 42 1 5.3469 -6.4511 7.8571 43 1 5.4852 -5.6326 10.5261 44 1 2.0029 -9.1656 8.0456 45 1 1.2131 -8.3219 5.8924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338163039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:21 Heat of formation + Delta-G solvation = -123.265857 kcal Electronic energy + Delta-G solvation = -26262.411268 eV Core-core repulsion = 22370.616393 eV Total energy + Delta-G solvation = -3891.794874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26937 -39.13239 -38.05974 -37.46512 -36.87278 -36.22985 -34.74984 -34.15319 -31.44291 -30.84548 -29.00695 -28.08068 -27.37124 -25.59733 -23.25978 -22.68454 -21.46737 -21.02416 -19.86797 -19.24051 -18.75385 -18.13601 -17.56719 -17.34139 -17.02917 -16.71247 -16.52192 -15.78681 -15.72004 -15.34875 -15.15165 -14.79494 -14.51613 -14.42049 -14.21382 -13.95969 -13.65900 -13.60155 -13.44364 -13.30447 -13.17377 -13.04238 -13.00494 -12.86900 -12.68507 -12.47370 -12.42498 -12.32483 -11.98324 -11.94712 -11.78799 -11.74462 -11.70496 -11.24309 -11.10546 -10.77642 -10.49494 -9.46640 -8.76438 -8.50803 -6.33830 -1.02452 0.78830 1.11997 1.38402 1.43074 1.52993 1.74766 1.78792 2.21676 2.25164 2.66341 2.80807 3.06953 3.36865 3.54026 3.67152 3.72998 3.87015 3.88263 4.04005 4.34882 4.36543 4.42876 4.48578 4.51784 4.56904 4.67107 4.80555 4.85323 4.93490 4.99114 5.00414 5.11748 5.16017 5.19532 5.33321 5.35590 5.39206 5.41694 5.70063 5.85613 6.06588 6.13862 6.34456 6.66788 6.70785 6.95287 7.00858 7.35829 8.42238 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.001966 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.175247 B =14237.865255 C =14956.682196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.597 4.597 5 S 2.430 3.570 6 O -0.971 6.971 7 O -0.961 6.961 8 C -0.600 4.600 9 C -0.132 4.132 10 C 0.502 3.498 11 O -0.569 6.569 12 N -0.645 5.645 13 C 0.017 3.983 14 C -0.108 4.108 15 C -0.169 4.169 16 C 0.064 3.936 17 C -0.496 4.496 18 H 0.079 0.921 19 C 0.022 3.978 20 N -0.846 5.846 21 Si 0.991 3.009 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.256 1.256 25 C -0.210 4.210 26 C -0.108 4.108 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.421 0.579 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.282 0.718 44 H 0.112 0.888 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 11.801 -18.239 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.729 4.729 5 S 2.616 3.384 6 O -0.969 6.969 7 O -0.958 6.958 8 C -0.728 4.728 9 C -0.173 4.173 10 C 0.290 3.710 11 O -0.448 6.448 12 N -0.291 5.291 13 C -0.076 4.076 14 C -0.129 4.129 15 C -0.189 4.189 16 C 0.062 3.938 17 C -0.527 4.527 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.474 5.474 21 Si 0.811 3.189 22 H -0.187 1.187 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.229 4.229 26 C -0.128 4.128 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.176 0.824 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.259 0.741 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.130 0.870 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.976 12.061 -18.314 23.011 hybrid contribution 0.728 0.004 1.390 1.570 sum -6.248 12.064 -16.923 21.702 Atomic orbital electron populations 1.22427 0.94380 1.03917 1.03984 1.20957 0.96483 0.98749 0.94958 1.21833 1.01711 0.93416 1.03054 1.30317 1.13965 1.20051 1.08524 1.07614 0.75165 0.79244 0.76341 1.93547 1.76554 1.75934 1.50828 1.93536 1.28980 1.86638 1.86659 1.30187 1.15369 1.04548 1.22726 1.21464 1.05247 0.94076 0.96504 1.21078 0.79859 0.81646 0.88424 1.90698 1.42715 1.58262 1.53117 1.42926 1.59444 1.09660 1.17063 1.17373 0.97263 1.02775 0.90208 1.20681 0.95755 0.99566 0.96854 1.21178 1.01381 1.01873 0.94468 1.18086 0.91023 0.92057 0.92644 1.19763 1.35036 0.97216 1.00674 0.90283 1.26849 0.92881 0.94449 1.04786 1.69899 1.33547 1.06186 1.37784 0.85071 0.79357 0.78729 0.75693 1.18694 1.19711 1.17987 1.20960 0.97987 1.05723 0.98268 1.20465 0.99109 0.98140 0.95066 0.91687 0.90947 0.90586 0.89897 0.91564 0.91346 0.91598 0.82416 0.82307 0.83529 0.83529 0.85032 0.84970 0.74131 0.88169 0.87704 0.90727 0.87006 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 8.83 71.98 0.64 -1.86 16 2 C -0.09 -1.05 2.92 -10.79 -0.03 -1.08 16 3 C -0.14 -1.20 9.19 71.98 0.66 -0.54 16 4 C -0.60 -5.70 5.26 71.98 0.38 -5.32 16 5 S 2.43 38.13 4.51 -56.49 -0.25 37.87 16 6 O -0.97 -21.55 18.10 -127.37 -2.30 -23.86 16 7 O -0.96 -20.27 15.46 -127.37 -1.97 -22.24 16 8 C -0.60 -10.15 5.09 71.98 0.37 -9.78 16 9 C -0.13 -2.64 5.71 29.85 0.17 -2.47 16 10 C 0.50 15.84 7.66 87.66 0.67 16.52 16 11 O -0.57 -23.42 13.40 -3.01 -0.04 -23.46 16 12 N -0.65 -20.43 5.30 -303.11 -1.61 -22.04 16 13 C 0.02 0.74 6.31 38.57 0.24 0.98 16 14 C -0.11 -5.47 8.61 22.14 0.19 -5.28 16 15 C -0.17 -9.42 8.61 22.48 0.19 -9.23 16 16 C 0.06 3.53 5.55 -21.28 -0.12 3.41 16 17 C -0.50 -27.16 9.02 23.39 0.21 -26.95 16 18 H 0.08 4.09 7.85 -2.91 -0.02 4.07 16 19 C 0.02 1.13 5.42 85.24 0.46 1.60 16 20 N -0.85 -46.82 10.61 21.82 0.23 -46.59 16 21 Si 0.99 39.61 29.56 68.60 2.03 41.64 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 25 C -0.21 -9.96 9.74 22.48 0.22 -9.74 16 26 C -0.11 -4.44 9.90 22.14 0.22 -4.22 16 27 H 0.06 1.10 5.41 -2.38 -0.01 1.08 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.16 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.15 2.32 8.10 -2.39 -0.02 2.30 16 37 H 0.15 2.29 8.10 -2.39 -0.02 2.27 16 38 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.13 2.02 8.14 -2.39 -0.02 2.01 16 40 H 0.42 9.30 8.82 -92.71 -0.82 8.48 16 41 H 0.10 5.10 6.22 -2.91 -0.02 5.08 16 42 H 0.11 6.27 6.15 -2.91 -0.02 6.25 16 43 H 0.28 14.29 8.30 -92.71 -0.77 13.52 16 44 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -79.82 382.57 0.74 -79.08 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.18 Total: 33.58 kcal Atomic # 6 Polarization: -58.45 SS G_CDS: 4.47 Total: -53.97 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -1.38 Total: -68.63 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: -4.31 Total: -69.56 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Atomic # 16 Polarization: 38.13 SS G_CDS: -0.25 Total: 37.87 kcal Total: -79.82 0.74 -79.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338163039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.188 kcal (2) G-P(sol) polarization free energy of solvation -79.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds