Wall clock time and date at job start Tue Mar 31 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 N 1.46501 * 109.47358 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99922 * 264.53626 * 4 3 2 6 6 H 1.07999 * 119.99650 * 146.01116 * 5 4 3 7 7 C 1.38951 * 119.99954 * 326.01778 * 5 4 3 8 8 N 1.31412 * 119.99820 * 337.80182 * 7 5 4 9 9 Si 1.86796 * 119.99967 * 157.80025 * 7 5 4 10 10 H 1.48506 * 109.47343 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99654 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00130 * 9 7 5 13 13 C 1.34772 * 120.00030 * 84.53636 * 4 3 2 14 14 O 1.21292 * 120.00265 * 359.97438 * 13 4 3 15 15 C 1.50702 * 120.00149 * 180.02562 * 13 4 3 16 16 C 1.52993 * 109.47266 * 180.02562 * 15 13 4 17 17 S 1.81400 * 109.47167 * 179.97438 * 16 15 13 18 18 O 1.42098 * 110.54499 * 68.37080 * 17 16 15 19 19 O 1.42105 * 110.54000 * 291.62334 * 17 16 15 20 20 C 1.76204 * 104.44971 * 179.97438 * 17 16 15 21 21 C 1.38236 * 119.99727 * 90.00041 * 20 17 16 22 22 C 1.38232 * 119.99446 * 179.72437 * 21 20 17 23 23 C 1.38238 * 120.00359 * 0.25380 * 22 21 20 24 24 C 1.50702 * 120.00251 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99675 * 0.02562 * 23 22 21 26 26 C 1.38230 * 119.99846 * 270.23470 * 20 17 16 27 27 H 1.09008 * 109.46741 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47220 * 299.99922 * 1 2 3 29 29 H 1.08994 * 109.47376 * 60.00711 * 1 2 3 30 30 H 1.08998 * 109.47220 * 240.00078 * 2 1 3 31 31 H 1.09000 * 109.47073 * 119.99585 * 2 1 3 32 32 H 1.08996 * 109.47509 * 59.99357 * 3 2 1 33 33 H 1.09008 * 109.46622 * 299.99931 * 3 2 1 34 34 H 0.97000 * 119.99630 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47109 * 59.99598 * 15 13 4 36 36 H 1.09000 * 109.46505 * 299.99720 * 15 13 4 37 37 H 1.09002 * 109.47423 * 59.99743 * 16 15 13 38 38 H 1.09005 * 109.47143 * 299.99810 * 16 15 13 39 39 H 1.07998 * 120.00558 * 0.02562 * 21 20 17 40 40 H 1.08008 * 119.99952 * 180.28016 * 22 21 20 41 41 H 1.09004 * 109.47019 * 89.99750 * 24 23 22 42 42 H 1.08997 * 109.47237 * 209.99858 * 24 23 22 43 43 H 1.09003 * 109.46704 * 330.00619 * 24 23 22 44 44 H 1.08000 * 119.99404 * 179.97438 * 25 23 22 45 45 H 1.07998 * 120.00480 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1910 1.5555 1.1810 6 1 5.1327 1.0427 1.3098 7 6 3.6746 2.3297 2.2129 8 7 2.8035 3.2780 1.9503 9 14 4.2184 2.0224 3.9733 10 1 5.1983 0.9068 4.0012 11 1 4.8507 3.2508 4.5177 12 1 3.0383 1.6646 4.8008 13 6 4.1784 1.3317 -1.1628 14 8 3.5716 1.2313 -2.2082 15 6 5.6854 1.3312 -1.1634 16 6 6.1948 1.1949 -2.5996 17 16 8.0088 1.1951 -2.6003 18 8 8.5079 0.0101 -1.9953 19 8 8.5074 2.4730 -2.2293 20 6 8.4478 1.0330 -4.2991 21 6 8.6198 2.1613 -5.0791 22 6 8.9697 2.0342 -6.4104 23 6 9.1425 0.7789 -6.9630 24 6 9.5235 0.6404 -8.4144 25 6 8.9649 -0.3494 -6.1843 26 6 8.6154 -0.2223 -4.8529 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 2.4428 3.8181 2.6707 35 1 6.0487 0.4939 -0.5675 36 1 6.0491 2.2659 -0.7365 37 1 5.8315 2.0325 -3.1950 38 1 5.8310 0.2604 -3.0270 39 1 8.4856 3.1420 -4.6473 40 1 9.1086 2.9158 -7.0188 41 1 10.6097 0.6301 -8.5056 42 1 9.1168 -0.2904 -8.8096 43 1 9.1197 1.4817 -8.9779 44 1 9.0995 -1.3301 -6.6161 45 1 8.4769 -1.1039 -4.2446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338179177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:22 Heat of formation + Delta-G solvation = -91.602190 kcal Electronic energy + Delta-G solvation = -27046.944399 eV Core-core repulsion = 23156.522565 eV Total energy + Delta-G solvation = -3890.421835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.51568 -38.74004 -36.93557 -35.78182 -35.30783 -33.26938 -33.05410 -32.29605 -31.27423 -31.24529 -27.59654 -26.30372 -25.13025 -23.47076 -23.06781 -22.02359 -20.69852 -19.18272 -18.92529 -17.97384 -16.84816 -16.39439 -16.20345 -15.54856 -15.40814 -15.26829 -14.76873 -14.55925 -14.39094 -14.36326 -14.14912 -13.79486 -13.74880 -13.17983 -12.95002 -12.65421 -12.53382 -12.37279 -12.25507 -11.98505 -11.90205 -11.84426 -11.59417 -11.44312 -11.35986 -11.31816 -11.01402 -10.88269 -10.84347 -10.69094 -10.45131 -10.32504 -10.26976 -9.77809 -9.28697 -9.23812 -9.14992 -8.54406 -7.60934 -6.45628 -4.12850 0.16237 0.67329 1.11023 2.99465 3.07588 3.20229 3.24191 3.25203 3.79613 3.96543 4.07276 4.23260 4.47988 4.53337 4.66281 4.71402 4.90933 4.94502 5.00835 5.10443 5.18196 5.19176 5.37688 5.40706 5.64846 5.71699 5.74812 5.77316 5.81455 5.92789 5.95235 5.99846 6.12102 6.20476 6.27114 6.30094 6.49055 6.52503 6.64392 6.65468 6.79427 7.07452 7.31324 7.43914 7.84102 8.29415 8.99310 9.42115 9.85104 10.55445 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.002859 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.731060 B = 9790.064641 C =10810.418043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.114 3.886 4 N -0.433 5.433 5 C -0.349 4.349 6 H 0.094 0.906 7 C 0.046 3.954 8 N -0.854 5.854 9 Si 0.912 3.088 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.473 3.527 14 O -0.605 6.605 15 C -0.117 4.117 16 C -0.572 4.572 17 S 2.489 3.511 18 O -0.941 6.941 19 O -0.938 6.938 20 C -0.661 4.661 21 C -0.019 4.019 22 C -0.144 4.144 23 C -0.038 4.038 24 C -0.122 4.122 25 C -0.144 4.144 26 C -0.019 4.019 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.271 0.729 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.131 0.869 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.131 0.869 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.602 -4.571 -13.590 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.009 4.009 4 N -0.150 5.150 5 C -0.476 4.476 6 H 0.111 0.889 7 C -0.161 4.161 8 N -0.490 5.490 9 Si 0.738 3.262 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.261 3.739 14 O -0.492 6.492 15 C -0.158 4.158 16 C -0.703 4.703 17 S 2.671 3.329 18 O -0.938 6.938 19 O -0.935 6.935 20 C -0.747 4.747 21 C -0.037 4.037 22 C -0.163 4.163 23 C -0.038 4.038 24 C -0.179 4.179 25 C -0.163 4.163 26 C -0.038 4.038 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.149 0.851 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.778 -4.395 -13.305 16.534 hybrid contribution -0.207 -0.130 0.186 0.307 sum 8.571 -4.525 -13.119 16.311 Atomic orbital electron populations 1.21653 0.96552 1.00453 1.01398 1.21840 0.94761 0.99418 1.01350 1.21484 0.81138 0.94608 1.03708 1.43484 1.04958 1.61699 1.04873 1.19544 1.07707 1.29775 0.90585 0.88868 1.25343 0.96822 0.93365 1.00584 1.69951 1.29777 1.15979 1.33244 0.86106 0.78895 0.78811 0.82371 1.18906 1.20537 1.20403 1.19897 0.88285 0.81819 0.83920 1.90516 1.70016 1.56914 1.31764 1.21157 0.97760 1.05242 0.91626 1.29994 1.20982 1.12869 1.06501 1.05683 0.78440 0.74799 0.74011 1.93548 1.77931 1.48264 1.74038 1.93560 1.77891 1.41194 1.80886 1.30707 1.18372 0.99628 1.25986 1.21006 0.91595 0.97760 0.93377 1.21176 1.02399 0.97231 0.95474 1.20264 0.93872 0.93435 0.96229 1.20925 1.02141 1.03272 0.91522 1.21168 1.02458 0.98591 0.94102 1.20987 0.91727 0.95953 0.95119 0.93614 0.92983 0.93146 0.92841 0.92322 0.87411 0.92960 0.91902 0.88661 0.87796 0.84330 0.84488 0.83915 0.85103 0.90489 0.91001 0.90987 0.85131 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.14 -2.73 6.22 -26.73 -0.17 -2.90 16 3 C 0.11 2.69 4.90 -4.04 -0.02 2.67 16 4 N -0.43 -10.69 2.56 -114.81 -0.29 -10.99 16 5 C -0.35 -8.63 8.70 -14.93 -0.13 -8.76 16 6 H 0.09 2.19 6.97 -52.49 -0.37 1.82 16 7 C 0.05 1.12 4.92 -17.47 -0.09 1.04 16 8 N -0.85 -21.97 11.34 55.50 0.63 -21.34 16 9 Si 0.91 19.07 29.61 -169.99 -5.03 14.04 16 10 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 13 C 0.47 11.16 7.60 -10.99 -0.08 11.08 16 14 O -0.61 -15.21 15.65 5.55 0.09 -15.12 16 15 C -0.12 -2.25 4.36 -27.89 -0.12 -2.37 16 16 C -0.57 -8.86 5.27 37.15 0.20 -8.67 16 17 S 2.49 36.72 5.16 -107.50 -0.55 36.17 16 18 O -0.94 -15.86 17.13 -57.54 -0.99 -16.84 16 19 O -0.94 -16.15 17.13 -57.54 -0.99 -17.13 16 20 C -0.66 -8.54 5.66 -39.58 -0.22 -8.76 16 21 C -0.02 -0.22 9.47 -39.58 -0.37 -0.60 16 22 C -0.14 -1.44 9.70 -39.58 -0.38 -1.83 16 23 C -0.04 -0.35 5.88 -104.62 -0.62 -0.97 16 24 C -0.12 -0.75 10.01 36.01 0.36 -0.39 16 25 C -0.14 -1.43 9.70 -39.58 -0.38 -1.82 16 26 C -0.02 -0.22 9.47 -39.59 -0.37 -0.60 16 27 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.11 2.67 5.35 -51.93 -0.28 2.40 16 33 H 0.05 1.28 7.59 -51.92 -0.39 0.88 16 34 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.10 1.69 7.65 -51.93 -0.40 1.30 16 36 H 0.10 1.97 8.10 -51.93 -0.42 1.55 16 37 H 0.14 2.04 8.10 -51.92 -0.42 1.62 16 38 H 0.14 1.95 8.10 -51.92 -0.42 1.53 16 39 H 0.14 1.53 7.57 -52.49 -0.40 1.14 16 40 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 43 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 44 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.14 1.48 7.58 -52.49 -0.40 1.08 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -32.98 388.12 -10.18 -43.16 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.85 Total: 7.09 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -2.04 Total: -24.88 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.34 Total: -32.33 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.88 Total: -49.10 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 16 Polarization: 36.72 SS G_CDS: -0.55 Total: 36.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.98 -10.18 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338179177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.442 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds