Wall clock time and date at job start Tue Mar 31 2020 22:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47705 * 2 1 4 4 H 1.09002 * 109.47103 * 54.99637 * 3 2 1 5 5 C 1.52997 * 109.47482 * 174.99884 * 3 2 1 6 6 N 1.46497 * 109.47081 * 295.00160 * 3 2 1 7 7 C 1.34777 * 120.00376 * 155.00022 * 6 3 2 8 8 O 1.21549 * 119.99749 * 359.97438 * 7 6 3 9 9 C 1.47854 * 120.00024 * 179.97438 * 7 6 3 10 10 C 1.39573 * 120.14167 * 359.72232 * 9 7 6 11 11 C 1.37958 * 119.84595 * 179.74474 * 10 9 7 12 12 C 1.38357 * 120.14761 * 0.53010 * 11 10 9 13 13 S 1.76206 * 119.85595 * 179.76192 * 12 11 10 14 14 O 1.42100 * 104.27544 * 26.05386 * 13 12 11 15 15 O 1.42094 * 104.27613 * 153.90878 * 13 12 11 16 16 C 1.81401 * 104.45012 * 269.98379 * 13 12 11 17 17 C 1.52999 * 109.46755 * 180.02562 * 16 13 12 18 18 C 1.50699 * 109.47028 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99950 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00319 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99970 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00323 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47187 * 89.99965 * 22 20 18 24 24 H 1.48498 * 109.47620 * 210.00322 * 22 20 18 25 25 H 1.48504 * 109.47291 * 330.00047 * 22 20 18 26 26 C 1.38359 * 120.29110 * 359.74358 * 12 11 10 27 27 C 1.37952 * 120.14420 * 359.97438 * 26 12 11 28 28 H 1.09000 * 109.47812 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46974 * 300.00556 * 1 2 3 30 30 H 1.09000 * 109.46929 * 59.99736 * 1 2 3 31 31 H 1.09001 * 109.46974 * 239.99443 * 2 1 3 32 32 H 1.09002 * 109.46661 * 119.99810 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 35 35 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 36 36 H 0.97006 * 119.99921 * 334.99446 * 6 3 2 37 37 H 1.07999 * 120.07454 * 0.02562 * 10 9 7 38 38 H 1.08011 * 119.92473 * 180.27619 * 11 10 9 39 39 H 1.08994 * 109.46716 * 299.99541 * 16 13 12 40 40 H 1.08997 * 109.47205 * 60.00086 * 16 13 12 41 41 H 1.09003 * 109.46938 * 299.99521 * 17 16 13 42 42 H 1.08997 * 109.47199 * 60.00075 * 17 16 13 43 43 H 0.96995 * 119.99893 * 180.02562 * 21 20 18 44 44 H 1.08008 * 119.92448 * 179.97438 * 26 12 11 45 45 H 1.08005 * 120.07155 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4441 0.1257 6 7 1.6526 2.0974 -1.2518 7 6 1.5259 3.4383 -1.2996 8 8 1.7327 4.1042 -0.3040 9 6 1.1353 4.0994 -2.5632 10 6 0.9027 3.3381 -3.7097 11 6 0.5335 3.9607 -4.8840 12 6 0.4042 5.3375 -4.9297 13 16 -0.0618 6.1253 -6.4354 14 8 -0.7917 5.1304 -7.1401 15 8 -0.6834 7.3339 -6.0207 16 6 1.5109 6.4722 -7.2703 17 6 1.2368 7.1652 -8.6065 18 6 2.5432 7.4540 -9.2999 19 1 3.4758 7.1718 -8.8339 20 6 2.5481 8.0783 -10.5291 21 7 1.4125 8.4224 -11.0964 22 14 4.1675 8.4369 -11.3883 23 1 4.5366 7.2848 -12.2497 24 1 4.0248 9.6551 -12.2254 25 1 5.2288 8.6557 -10.3729 26 6 0.6388 6.0984 -3.7982 27 6 1.0030 5.4878 -2.6160 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.9995 0.9050 -0.7160 34 1 3.8532 0.9568 1.0572 35 1 3.9284 2.4718 0.1253 36 1 1.4872 1.5660 -2.0463 37 1 1.0072 2.2637 -3.6763 38 1 0.3488 3.3725 -5.7709 39 1 2.1198 7.1225 -6.6424 40 1 2.0420 5.5371 -7.4478 41 1 0.6275 6.5152 -9.2347 42 1 0.7059 8.1004 -8.4286 43 1 1.4159 8.8613 -11.9614 44 1 0.5366 7.1728 -3.8406 45 1 1.1855 6.0829 -1.7333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344013910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:51 Heat of formation + Delta-G solvation = -100.539729 kcal Electronic energy + Delta-G solvation = -26369.570662 eV Core-core repulsion = 22478.761266 eV Total energy + Delta-G solvation = -3890.809396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66573 -38.78658 -36.83096 -36.67848 -35.51433 -33.95321 -33.19057 -31.57137 -31.25156 -31.21738 -30.02584 -25.72352 -25.06998 -24.02455 -23.02244 -21.77536 -21.40102 -20.88268 -18.85101 -18.37203 -17.46718 -16.91025 -16.46462 -15.81562 -15.50427 -15.34834 -15.26525 -14.84972 -14.62604 -14.47025 -14.32568 -14.17431 -13.93296 -13.74101 -13.47349 -13.13353 -13.04853 -12.68819 -12.53238 -12.25346 -11.83529 -11.81424 -11.66464 -11.64274 -11.59397 -11.42879 -11.18804 -11.11427 -11.01370 -10.81714 -10.45060 -10.42624 -10.27012 -9.82954 -9.64689 -9.46804 -9.31282 -9.16857 -8.53654 -6.15981 -4.21930 0.12686 0.54108 1.05210 2.38940 2.68373 3.24313 3.25709 3.30988 3.33497 3.42900 4.13565 4.23630 4.28566 4.34051 4.35936 4.50599 4.55445 4.59483 4.66800 4.94289 5.03397 5.07296 5.13142 5.14862 5.19587 5.26620 5.32151 5.41649 5.45914 5.58928 5.59083 5.63028 5.68814 5.72998 5.76824 5.81837 5.90291 5.94597 6.07484 6.38932 6.50511 7.04882 7.25023 7.30339 7.76849 7.78724 8.12005 8.81424 9.43111 10.94881 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.002227 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.998394 B =12572.471822 C =13132.300357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.139 3.861 4 H 0.090 0.910 5 C -0.165 4.165 6 N -0.720 5.720 7 C 0.559 3.441 8 O -0.530 6.530 9 C -0.094 4.094 10 C -0.111 4.111 11 C -0.032 4.032 12 C -0.631 4.631 13 S 2.471 3.529 14 O -0.943 6.943 15 O -0.942 6.942 16 C -0.562 4.562 17 C 0.026 3.974 18 C -0.521 4.521 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.031 4.031 27 C -0.082 4.082 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.401 0.599 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.266 0.734 44 H 0.151 0.849 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -16.757 21.069 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.035 3.965 4 H 0.108 0.892 5 C -0.224 4.224 6 N -0.373 5.373 7 C 0.346 3.654 8 O -0.407 6.407 9 C -0.097 4.097 10 C -0.130 4.130 11 C -0.050 4.050 12 C -0.715 4.715 13 S 2.653 3.347 14 O -0.940 6.940 15 O -0.939 6.939 16 C -0.696 4.696 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.081 0.919 20 C -0.145 4.145 21 N -0.527 5.527 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.049 4.049 27 C -0.102 4.102 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.236 0.764 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.169 0.831 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.214 -16.076 21.477 26.828 hybrid contribution 1.522 -0.380 -0.483 1.642 sum 1.737 -16.456 20.994 26.732 Atomic orbital electron populations 1.21794 0.95153 1.01911 1.02391 1.21850 0.96702 0.95156 1.03269 1.21065 0.95154 0.93142 0.87102 0.89166 1.22196 0.95096 1.02898 1.02172 1.46031 1.70522 1.06730 1.14002 1.18306 0.76907 0.82169 0.88011 1.90782 1.49865 1.64155 1.35944 1.20190 1.01298 0.94878 0.93374 1.21348 0.99582 0.99686 0.92402 1.20958 0.92539 0.92773 0.98767 1.31349 1.13908 1.04930 1.21263 1.06519 0.79390 0.74573 0.74249 1.93528 1.69240 1.59551 1.71717 1.93533 1.73785 1.45416 1.81201 1.30193 1.16702 1.10869 1.11816 1.19045 0.99635 0.95888 0.86735 1.20978 0.91735 1.39793 1.03553 0.91929 1.25065 0.96792 0.95351 0.97256 1.69952 1.25472 1.40278 1.17003 0.86457 0.83263 0.77953 0.79539 1.20454 1.20994 1.19744 1.21055 0.92082 1.00859 0.90936 1.21390 0.96796 0.93271 0.98697 0.92352 0.92487 0.92511 0.91245 0.90171 0.92312 0.91461 0.91877 0.76363 0.85010 0.83282 0.85649 0.85694 0.94536 0.94509 0.92468 0.83149 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.80 37.16 0.36 -0.41 16 2 C -0.13 -0.59 5.47 -26.74 -0.15 -0.73 16 3 C 0.14 0.93 2.57 -67.94 -0.17 0.76 16 4 H 0.09 0.76 7.58 -51.93 -0.39 0.36 16 5 C -0.17 -1.07 9.48 37.16 0.35 -0.72 16 6 N -0.72 -5.41 4.48 -54.75 -0.25 -5.66 16 7 C 0.56 6.11 7.74 -12.33 -0.10 6.01 16 8 O -0.53 -7.46 16.01 5.32 0.09 -7.38 16 9 C -0.09 -1.05 5.87 -104.97 -0.62 -1.66 16 10 C -0.11 -1.07 9.54 -39.19 -0.37 -1.44 16 11 C -0.03 -0.37 9.45 -39.64 -0.37 -0.75 16 12 C -0.63 -8.60 5.66 -39.49 -0.22 -8.82 16 13 S 2.47 41.68 5.15 -107.50 -0.55 41.12 16 14 O -0.94 -18.10 17.11 -57.54 -0.98 -19.09 16 15 O -0.94 -18.38 17.11 -57.54 -0.98 -19.37 16 16 C -0.56 -10.00 5.92 37.16 0.22 -9.78 16 17 C 0.03 0.63 4.98 -27.88 -0.14 0.49 16 18 C -0.52 -13.90 9.11 -34.44 -0.31 -14.22 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 22 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C -0.03 -0.39 9.45 -39.64 -0.37 -0.77 16 27 C -0.08 -0.98 9.60 -39.19 -0.38 -1.36 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 7.75 -51.93 -0.40 -0.09 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.40 2.08 6.64 -40.82 -0.27 1.81 16 37 H 0.13 0.77 6.41 -52.49 -0.34 0.44 16 38 H 0.15 1.54 7.56 -52.48 -0.40 1.14 16 39 H 0.13 1.97 8.14 -51.93 -0.42 1.55 16 40 H 0.12 1.94 8.14 -51.93 -0.42 1.51 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.15 1.75 7.56 -52.48 -0.40 1.35 16 45 H 0.14 1.59 7.65 -52.48 -0.40 1.19 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -35.49 390.88 -10.24 -45.72 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.79 Total: 0.00 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: -2.37 Total: -31.90 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.49 Total: -30.73 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.88 Total: -45.83 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 41.68 SS G_CDS: -0.55 Total: 41.12 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.49 -10.24 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344013910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.817 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds