Wall clock time and date at job start Tue Mar 31 2020 22:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47705 * 2 1 4 4 H 1.09002 * 109.47103 * 54.99637 * 3 2 1 5 5 C 1.52997 * 109.47482 * 174.99884 * 3 2 1 6 6 N 1.46497 * 109.47081 * 295.00160 * 3 2 1 7 7 C 1.34777 * 120.00376 * 155.00022 * 6 3 2 8 8 O 1.21549 * 119.99749 * 359.97438 * 7 6 3 9 9 C 1.47854 * 120.00024 * 179.97438 * 7 6 3 10 10 C 1.39573 * 120.14167 * 359.72232 * 9 7 6 11 11 C 1.37958 * 119.84595 * 179.74474 * 10 9 7 12 12 C 1.38357 * 120.14761 * 0.53010 * 11 10 9 13 13 S 1.76206 * 119.85595 * 179.76192 * 12 11 10 14 14 O 1.42100 * 104.27544 * 26.05386 * 13 12 11 15 15 O 1.42094 * 104.27613 * 153.90878 * 13 12 11 16 16 C 1.81401 * 104.45012 * 269.98379 * 13 12 11 17 17 C 1.52999 * 109.46755 * 180.02562 * 16 13 12 18 18 C 1.50699 * 109.47028 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99950 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00319 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99970 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00323 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47187 * 89.99965 * 22 20 18 24 24 H 1.48498 * 109.47620 * 210.00322 * 22 20 18 25 25 H 1.48504 * 109.47291 * 330.00047 * 22 20 18 26 26 C 1.38359 * 120.29110 * 359.74358 * 12 11 10 27 27 C 1.37952 * 120.14420 * 359.97438 * 26 12 11 28 28 H 1.09000 * 109.47812 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46974 * 300.00556 * 1 2 3 30 30 H 1.09000 * 109.46929 * 59.99736 * 1 2 3 31 31 H 1.09001 * 109.46974 * 239.99443 * 2 1 3 32 32 H 1.09002 * 109.46661 * 119.99810 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 35 35 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 36 36 H 0.97006 * 119.99921 * 334.99446 * 6 3 2 37 37 H 1.07999 * 120.07454 * 0.02562 * 10 9 7 38 38 H 1.08011 * 119.92473 * 180.27619 * 11 10 9 39 39 H 1.08994 * 109.46716 * 299.99541 * 16 13 12 40 40 H 1.08997 * 109.47205 * 60.00086 * 16 13 12 41 41 H 1.09003 * 109.46938 * 299.99521 * 17 16 13 42 42 H 1.08997 * 109.47199 * 60.00075 * 17 16 13 43 43 H 0.96995 * 119.99893 * 180.02562 * 21 20 18 44 44 H 1.08008 * 119.92448 * 179.97438 * 26 12 11 45 45 H 1.08005 * 120.07155 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4441 0.1257 6 7 1.6526 2.0974 -1.2518 7 6 1.5259 3.4383 -1.2996 8 8 1.7327 4.1042 -0.3040 9 6 1.1353 4.0994 -2.5632 10 6 0.9027 3.3381 -3.7097 11 6 0.5335 3.9607 -4.8840 12 6 0.4042 5.3375 -4.9297 13 16 -0.0618 6.1253 -6.4354 14 8 -0.7917 5.1304 -7.1401 15 8 -0.6834 7.3339 -6.0207 16 6 1.5109 6.4722 -7.2703 17 6 1.2368 7.1652 -8.6065 18 6 2.5432 7.4540 -9.2999 19 1 3.4758 7.1718 -8.8339 20 6 2.5481 8.0783 -10.5291 21 7 1.4125 8.4224 -11.0964 22 14 4.1675 8.4369 -11.3883 23 1 4.5366 7.2848 -12.2497 24 1 4.0248 9.6551 -12.2254 25 1 5.2288 8.6557 -10.3729 26 6 0.6388 6.0984 -3.7982 27 6 1.0030 5.4878 -2.6160 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.9995 0.9050 -0.7160 34 1 3.8532 0.9568 1.0572 35 1 3.9284 2.4718 0.1253 36 1 1.4872 1.5660 -2.0463 37 1 1.0072 2.2637 -3.6763 38 1 0.3488 3.3725 -5.7709 39 1 2.1198 7.1225 -6.6424 40 1 2.0420 5.5371 -7.4478 41 1 0.6275 6.5152 -9.2347 42 1 0.7059 8.1004 -8.4286 43 1 1.4159 8.8613 -11.9614 44 1 0.5366 7.1728 -3.8406 45 1 1.1855 6.0829 -1.7333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344013910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:50 Heat of formation + Delta-G solvation = -124.846609 kcal Electronic energy + Delta-G solvation = -26370.624687 eV Core-core repulsion = 22478.761266 eV Total energy + Delta-G solvation = -3891.863421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49703 -39.65260 -38.14819 -37.50138 -36.98537 -35.87623 -33.92718 -33.11735 -32.38827 -32.08122 -30.58663 -27.59627 -25.96795 -24.60046 -23.88985 -23.47869 -22.13879 -21.64575 -20.06327 -19.40534 -18.86936 -18.14737 -17.62665 -16.98796 -16.93455 -16.50435 -16.32485 -16.06969 -15.87663 -15.39222 -15.09433 -14.86774 -14.71185 -14.68192 -14.48044 -14.31758 -14.10726 -13.93720 -13.69653 -13.26289 -13.15444 -13.07349 -12.91287 -12.77448 -12.68605 -12.38156 -12.29415 -12.22061 -12.13844 -12.05461 -11.97142 -11.66477 -11.63689 -11.19305 -11.04586 -10.61932 -10.57237 -10.20998 -10.16457 -8.23833 -6.37221 -0.99025 -0.67916 0.15738 1.43279 1.44582 1.48732 1.55590 1.95822 2.01744 2.39714 2.49572 2.91956 3.09879 3.13939 3.47996 3.61707 3.78471 3.79078 4.04459 4.05796 4.07270 4.15366 4.17367 4.32269 4.43557 4.48103 4.61419 4.74118 4.78031 4.80335 4.81973 4.88152 4.92805 4.97749 5.06211 5.11631 5.15880 5.27078 5.30920 5.31820 5.40741 5.46983 5.59705 5.71092 6.08074 6.38865 6.76592 7.04445 7.32740 8.88226 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.002227 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.998394 B =12572.471822 C =13132.300357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C 0.137 3.863 4 H 0.070 0.930 5 C -0.162 4.162 6 N -0.702 5.702 7 C 0.558 3.442 8 O -0.568 6.568 9 C -0.094 4.094 10 C -0.094 4.094 11 C -0.037 4.037 12 C -0.633 4.633 13 S 2.491 3.509 14 O -0.970 6.970 15 O -0.976 6.976 16 C -0.562 4.562 17 C 0.017 3.983 18 C -0.537 4.537 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.933 5.933 22 Si 0.972 3.028 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.259 1.259 26 C -0.040 4.040 27 C -0.090 4.090 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.415 0.585 37 H 0.177 0.823 38 H 0.165 0.835 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.013 0.987 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.154 0.846 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -19.562 22.172 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C 0.033 3.967 4 H 0.088 0.912 5 C -0.220 4.220 6 N -0.355 5.355 7 C 0.345 3.655 8 O -0.448 6.448 9 C -0.097 4.097 10 C -0.113 4.113 11 C -0.056 4.056 12 C -0.721 4.721 13 S 2.677 3.323 14 O -0.968 6.968 15 O -0.974 6.974 16 C -0.694 4.694 17 C -0.022 4.022 18 C -0.576 4.576 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.573 5.573 22 Si 0.796 3.204 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.183 1.183 26 C -0.058 4.058 27 C -0.110 4.110 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.253 0.747 37 H 0.194 0.806 38 H 0.183 0.817 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.031 0.969 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.172 0.828 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.050 -18.896 22.524 29.472 hybrid contribution 0.927 0.384 -0.673 1.208 sum 2.977 -18.513 21.851 28.793 Atomic orbital electron populations 1.21812 0.95619 1.02346 1.01665 1.21816 0.96144 0.93409 1.04726 1.21170 0.95373 0.94243 0.85921 0.91225 1.22163 0.94702 1.01561 1.03569 1.45970 1.68852 1.05670 1.15009 1.18320 0.76768 0.83076 0.87365 1.90772 1.51806 1.65179 1.37084 1.20378 1.00570 0.94733 0.94060 1.21721 0.97227 1.01701 0.90635 1.21271 0.92092 0.91928 1.00265 1.30654 1.16540 1.05868 1.19044 1.05396 0.78420 0.73714 0.74731 1.93484 1.69924 1.60001 1.73353 1.93485 1.74548 1.47374 1.81960 1.30073 1.18425 1.11978 1.08954 1.18897 0.98440 0.94946 0.89882 1.21506 0.93075 1.39125 1.03871 0.90480 1.26087 1.00508 0.95277 0.98358 1.70098 1.28040 1.41556 1.17569 0.85337 0.78846 0.77756 0.78467 1.19549 1.21063 1.18278 1.21131 0.92462 1.01217 0.91032 1.21481 0.96943 0.94100 0.98427 0.91346 0.93590 0.92920 0.89546 0.88939 0.91054 0.90007 0.94495 0.74683 0.80608 0.81709 0.83538 0.83025 0.96907 0.97202 0.92437 0.82847 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.80 71.98 0.71 -0.47 16 2 C -0.12 -0.70 5.47 30.59 0.17 -0.53 16 3 C 0.14 1.54 2.57 44.99 0.12 1.65 16 4 H 0.07 1.11 7.58 -2.39 -0.02 1.09 16 5 C -0.16 -1.76 9.48 71.98 0.68 -1.08 16 6 N -0.70 -8.64 4.48 -445.42 -2.00 -10.64 16 7 C 0.56 11.20 7.74 86.79 0.67 11.87 16 8 O -0.57 -15.73 16.01 -3.87 -0.06 -15.79 16 9 C -0.09 -1.88 5.87 -20.09 -0.12 -2.00 16 10 C -0.09 -1.47 9.54 22.53 0.21 -1.25 16 11 C -0.04 -0.76 9.45 22.23 0.21 -0.55 16 12 C -0.63 -16.46 5.66 22.33 0.13 -16.33 16 13 S 2.49 84.70 5.15 -56.49 -0.29 84.41 16 14 O -0.97 -37.53 17.11 -127.65 -2.18 -39.71 16 15 O -0.98 -39.31 17.11 -127.65 -2.18 -41.49 16 16 C -0.56 -19.86 5.92 71.98 0.43 -19.44 16 17 C 0.02 0.85 4.98 29.85 0.15 1.00 16 18 C -0.54 -28.82 9.11 25.60 0.23 -28.58 16 19 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 20 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 21 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 22 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 26 C -0.04 -0.98 9.45 22.23 0.21 -0.77 16 27 C -0.09 -2.05 9.60 22.52 0.22 -1.83 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.43 7.75 -2.39 -0.02 0.42 16 31 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.41 2.59 6.64 -92.70 -0.62 1.98 16 37 H 0.18 1.11 6.41 -2.91 -0.02 1.09 16 38 H 0.17 2.89 7.56 -2.91 -0.02 2.87 16 39 H 0.15 4.50 8.14 -2.39 -0.02 4.48 16 40 H 0.15 4.47 8.14 -2.39 -0.02 4.45 16 41 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.15 3.59 7.56 -2.91 -0.02 3.56 16 45 H 0.15 3.21 7.65 -2.91 -0.02 3.18 16 Total: -1.00 -79.51 390.88 0.44 -79.07 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.38 Total: 13.15 kcal Atomic # 6 Polarization: -62.53 SS G_CDS: 4.47 Total: -58.06 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -1.71 Total: -66.10 kcal Atomic # 8 Polarization: -92.56 SS G_CDS: -4.43 Total: -97.00 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 84.70 SS G_CDS: -0.29 Total: 84.41 kcal Total: -79.51 0.44 -79.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344013910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.779 kcal (2) G-P(sol) polarization free energy of solvation -79.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds