Wall clock time and date at job start Tue Mar 31 2020 22:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47287 * 2 1 4 4 C 1.53010 * 109.46820 * 119.99905 * 2 1 3 5 5 S 1.81393 * 109.47202 * 64.99926 * 4 2 1 6 6 O 1.42098 * 108.58121 * 65.50984 * 5 4 2 7 7 O 1.42101 * 108.57749 * 294.48760 * 5 4 2 8 8 C 1.81395 * 101.92174 * 179.97438 * 5 4 2 9 9 C 1.53004 * 109.47267 * 179.97438 * 8 5 4 10 10 C 1.50693 * 109.47130 * 179.97438 * 9 8 5 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 H 1.09004 * 109.47097 * 300.00456 * 1 2 3 28 28 H 1.08995 * 109.47063 * 60.00048 * 1 2 3 29 29 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47097 * 239.99543 * 2 1 3 31 31 H 1.09001 * 109.47517 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47540 * 299.99946 * 3 2 1 33 33 H 1.09004 * 109.47425 * 59.99744 * 3 2 1 34 34 H 1.09000 * 109.46703 * 304.99772 * 4 2 1 35 35 H 1.09002 * 109.46493 * 184.99725 * 4 2 1 36 36 H 1.09001 * 109.47384 * 60.00326 * 8 5 4 37 37 H 1.09001 * 109.47241 * 299.99398 * 8 5 4 38 38 H 1.09004 * 109.46955 * 59.99840 * 9 8 5 39 39 H 1.08999 * 109.47357 * 300.00231 * 9 8 5 40 40 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 41 41 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 43 43 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 45 45 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 16 1.5600 -2.4691 1.1767 6 8 2.2380 -3.0799 0.0875 7 8 0.1432 -2.5528 1.2469 8 6 2.2550 -3.1131 2.7236 9 6 1.9431 -4.6064 2.8401 10 6 2.5210 -5.1415 4.1248 11 8 3.1227 -4.4013 4.8739 12 7 2.3684 -6.4426 4.4421 13 6 2.8217 -6.9173 5.6687 14 6 3.9695 -6.3909 6.2413 15 6 4.4182 -6.8702 7.4577 16 6 3.7263 -7.8753 8.1206 17 6 2.5910 -8.4080 7.5821 18 6 2.1127 -7.9379 6.3449 19 6 0.9403 -8.4835 5.7812 20 1 0.3513 -7.8995 5.0896 21 6 0.5406 -9.7818 6.1180 22 7 1.4270 -10.6548 6.5235 23 14 -1.2582 -10.2684 5.9889 24 1 -1.4183 -11.6862 6.4001 25 1 -2.0709 -9.4005 6.8787 26 1 -1.7156 -10.1048 4.5856 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6444 1.2952 36 1 1.8144 -2.5833 3.5682 37 1 3.3350 -2.9659 2.7257 38 1 2.3834 -5.1365 1.9955 39 1 0.8631 -4.7533 2.8381 40 1 1.9425 -7.0479 3.8151 41 1 4.5158 -5.6092 5.7344 42 1 5.3150 -6.4588 7.8969 43 1 4.0897 -8.2386 9.0704 44 1 2.0597 -9.1891 8.1056 45 1 2.3700 -10.4275 6.5167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344340420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:25 Heat of formation + Delta-G solvation = -129.702700 kcal Electronic energy + Delta-G solvation = -26781.106447 eV Core-core repulsion = 22889.032450 eV Total energy + Delta-G solvation = -3892.073997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32714 -39.27473 -38.06221 -37.46723 -36.87015 -35.84697 -35.54875 -34.23914 -31.26602 -30.46957 -28.98169 -28.07425 -27.15448 -26.06746 -23.33491 -22.67433 -21.46111 -21.02401 -19.88059 -19.86215 -18.68978 -18.06240 -17.56628 -17.35159 -16.80254 -16.68023 -16.52366 -15.89533 -15.70053 -15.62365 -15.22897 -14.84103 -14.53115 -14.46367 -14.21497 -14.14331 -13.86980 -13.62666 -13.43874 -13.28907 -13.16657 -13.04298 -13.00343 -12.71595 -12.51686 -12.45911 -12.42714 -12.16806 -11.98195 -11.96709 -11.94062 -11.74589 -11.50534 -11.16344 -11.07533 -10.84570 -10.62416 -9.56554 -9.31525 -8.83983 -6.43093 -1.02993 0.73344 0.90426 1.53313 1.64372 1.68241 1.79248 1.80647 2.25765 2.33004 2.67836 2.68685 3.06505 3.35780 3.52322 3.53963 3.72170 3.83862 3.85542 4.04130 4.30862 4.35191 4.39309 4.41721 4.49196 4.56420 4.66348 4.67874 4.80403 4.82382 4.93081 4.94365 5.00733 5.06252 5.19547 5.28273 5.35661 5.39279 5.47386 5.66085 5.77121 5.89865 6.00818 6.11594 6.33534 6.58077 6.83851 6.89755 7.28466 8.04325 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.002561 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.066449 B =10932.530819 C =12270.836821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.592 4.592 5 S 2.425 3.575 6 O -0.973 6.973 7 O -0.964 6.964 8 C -0.595 4.595 9 C -0.135 4.135 10 C 0.504 3.496 11 O -0.567 6.567 12 N -0.639 5.639 13 C -0.001 4.001 14 C -0.088 4.088 15 C -0.241 4.241 16 C -0.096 4.096 17 C -0.227 4.227 18 C 0.063 3.937 19 C -0.544 4.544 20 H 0.081 0.919 21 C 0.007 3.993 22 N -0.813 5.813 23 Si 1.113 2.887 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.253 1.253 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.412 0.588 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 18.402 -12.237 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.112 4.112 3 C -0.199 4.199 4 C -0.724 4.724 5 S 2.613 3.387 6 O -0.970 6.970 7 O -0.961 6.961 8 C -0.723 4.723 9 C -0.176 4.176 10 C 0.292 3.708 11 O -0.447 6.447 12 N -0.282 5.282 13 C -0.096 4.096 14 C -0.108 4.108 15 C -0.261 4.261 16 C -0.115 4.115 17 C -0.248 4.248 18 C 0.059 3.941 19 C -0.572 4.572 20 H 0.099 0.901 21 C -0.210 4.210 22 N -0.436 5.436 23 Si 0.931 3.069 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.177 1.177 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.249 0.751 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.113 0.887 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.973 17.161 -12.120 21.102 hybrid contribution 1.599 0.990 0.498 1.945 sum -0.374 18.150 -11.622 21.556 Atomic orbital electron populations 1.22430 0.94512 1.03840 1.03995 1.20962 0.96392 0.98852 0.94978 1.21826 1.01759 0.93247 1.03082 1.30286 1.14062 1.19503 1.08548 1.07721 0.75171 0.79477 0.76374 1.93544 1.76544 1.76064 1.50849 1.93538 1.29169 1.86728 1.86647 1.30156 1.15549 1.03760 1.22842 1.21437 1.04850 0.94657 0.96633 1.20990 0.80006 0.81293 0.88530 1.90607 1.43108 1.57931 1.53065 1.42912 1.58707 1.09588 1.16977 1.17799 0.96805 1.05356 0.89610 1.20892 0.94390 0.98925 0.96567 1.20614 1.03669 1.03361 0.98440 1.20672 0.95360 0.96324 0.99127 1.20791 1.00614 1.06161 0.97185 1.17830 0.92225 0.92824 0.91253 1.20535 1.07893 1.01720 1.27028 0.90073 1.28315 1.10059 0.92565 0.90095 1.70578 1.05215 1.36623 1.31216 0.83033 0.68094 0.76679 0.79114 1.19983 1.19425 1.17698 0.90871 0.90610 0.91876 0.89987 0.91431 0.91408 0.91490 0.82242 0.82039 0.83318 0.83079 0.85522 0.85849 0.75083 0.86794 0.86390 0.86639 0.88743 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 8.83 71.98 0.64 -2.04 16 2 C -0.09 -1.10 2.92 -10.79 -0.03 -1.13 16 3 C -0.14 -1.18 9.19 71.98 0.66 -0.52 16 4 C -0.59 -5.79 5.26 71.99 0.38 -5.41 16 5 S 2.43 42.04 4.51 -56.49 -0.25 41.79 16 6 O -0.97 -23.41 18.10 -127.37 -2.30 -25.72 16 7 O -0.96 -22.63 15.46 -127.37 -1.97 -24.60 16 8 C -0.59 -10.94 5.09 71.98 0.37 -10.57 16 9 C -0.14 -3.28 5.71 29.85 0.17 -3.11 16 10 C 0.50 17.78 7.67 87.65 0.67 18.45 16 11 O -0.57 -23.17 13.40 -3.03 -0.04 -23.21 16 12 N -0.64 -25.32 4.90 -302.28 -1.48 -26.80 16 13 C 0.00 -0.06 6.33 38.88 0.25 0.18 16 14 C -0.09 -4.11 8.69 22.36 0.19 -3.91 16 15 C -0.24 -10.82 10.04 22.42 0.22 -10.59 16 16 C -0.10 -4.43 9.97 22.01 0.22 -4.21 16 17 C -0.23 -11.63 7.87 22.47 0.18 -11.45 16 18 C 0.06 3.24 5.32 -21.18 -0.11 3.13 16 19 C -0.54 -27.18 8.35 23.38 0.20 -26.98 16 20 H 0.08 3.83 7.39 -2.91 -0.02 3.80 16 21 C 0.01 0.34 4.95 85.26 0.42 0.76 16 22 N -0.81 -42.17 12.32 21.83 0.27 -41.90 16 23 Si 1.11 41.19 30.00 68.60 2.06 43.24 16 24 H -0.28 -10.17 7.11 99.48 0.71 -9.47 16 25 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 26 H -0.25 -8.41 7.11 99.48 0.71 -7.70 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.16 5.40 -2.39 -0.01 1.15 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.15 2.47 8.10 -2.39 -0.02 2.45 16 37 H 0.15 2.38 8.10 -2.39 -0.02 2.36 16 38 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.41 14.65 7.95 -92.71 -0.74 13.91 16 41 H 0.11 5.20 6.20 -2.91 -0.02 5.19 16 42 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 44 H 0.09 5.01 6.45 -2.91 -0.02 4.99 16 45 H 0.29 15.45 6.62 -92.70 -0.61 14.84 16 Total: -1.00 -73.09 379.95 1.11 -71.98 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: 0.42 Total: 42.62 kcal Atomic # 6 Polarization: -61.82 SS G_CDS: 4.42 Total: -57.40 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -1.21 Total: -68.70 kcal Atomic # 8 Polarization: -69.21 SS G_CDS: -4.31 Total: -73.53 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.06 Total: 43.24 kcal Atomic # 16 Polarization: 42.04 SS G_CDS: -0.25 Total: 41.79 kcal Total: -73.09 1.11 -71.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344340420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.725 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds