Wall clock time and date at job start Tue Mar 31 2020 22:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00139 * 2 1 4 4 O 1.20825 * 119.99899 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00294 * 180.02562 * 3 2 1 6 6 N 1.46491 * 109.47349 * 189.16342 * 5 3 2 7 7 C 1.37100 * 120.00298 * 279.56424 * 6 5 3 8 8 H 1.08007 * 119.99559 * 334.14565 * 7 6 5 9 9 C 1.38949 * 120.00062 * 154.13761 * 7 6 5 10 10 N 1.31406 * 120.00355 * 352.50496 * 9 7 6 11 11 Si 1.86801 * 119.99607 * 172.50245 * 9 7 6 12 12 H 1.48495 * 109.47271 * 59.99922 * 11 9 7 13 13 H 1.48506 * 109.47048 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47055 * 299.99868 * 11 9 7 15 15 C 1.34777 * 120.00054 * 99.56043 * 6 5 3 16 16 O 1.21296 * 120.00004 * 125.62497 * 15 6 5 17 17 C 1.50695 * 120.00609 * 305.63013 * 15 6 5 18 18 C 1.53002 * 109.47067 * 57.84252 * 17 15 6 19 19 C 1.53008 * 109.46891 * 297.84989 * 17 15 6 20 20 O 1.42898 * 109.47631 * 177.84758 * 17 15 6 21 21 C 1.35943 * 116.99833 * 301.86434 * 20 17 15 22 22 C 1.38712 * 120.03195 * 3.68876 * 21 20 17 23 23 C 1.38146 * 119.97144 * 180.24557 * 22 21 20 24 24 C 1.38454 * 120.02998 * 359.47974 * 23 22 21 25 25 F 1.35099 * 119.97244 * 180.29075 * 24 23 22 26 26 C 1.38461 * 120.06109 * 0.27343 * 24 23 22 27 27 C 1.38147 * 120.02605 * 359.97438 * 26 24 23 28 28 H 1.09007 * 109.47204 * 60.00323 * 1 2 3 29 29 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47520 * 300.00537 * 1 2 3 31 31 H 1.09000 * 109.47054 * 69.15570 * 5 3 2 32 32 H 1.09008 * 109.46314 * 309.16385 * 5 3 2 33 33 H 0.96996 * 120.00198 * 185.00528 * 10 9 7 34 34 H 1.08998 * 109.47515 * 180.96474 * 18 17 15 35 35 H 1.08996 * 109.47333 * 300.96606 * 18 17 15 36 36 H 1.08999 * 109.47310 * 60.96950 * 18 17 15 37 37 H 1.09003 * 109.46375 * 291.79784 * 19 17 15 38 38 H 1.08997 * 109.47289 * 51.79844 * 19 17 15 39 39 H 1.09004 * 109.46847 * 171.80677 * 19 17 15 40 40 H 1.08001 * 120.01341 * 0.03001 * 22 21 20 41 41 H 1.08002 * 119.98648 * 179.75088 * 23 22 21 42 42 H 1.07995 * 119.98413 * 180.02562 * 26 24 23 43 43 H 1.08006 * 120.01116 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9827 2.6620 0.2195 7 6 3.9783 3.5527 -0.8228 8 1 4.0837 3.1973 -1.8372 9 6 3.8379 4.9125 -0.5740 10 7 3.5626 5.3335 0.6400 11 14 4.0408 6.1423 -1.9654 12 1 3.0345 5.8651 -3.0217 13 1 3.8441 7.5183 -1.4425 14 1 5.4057 6.0212 -2.5380 15 6 4.3702 3.0627 1.4466 16 8 5.4498 3.5945 1.5982 17 6 3.4623 2.8501 2.6304 18 6 3.1435 1.3600 2.7675 19 6 2.1636 3.6325 2.4241 20 8 4.1117 3.3096 3.8175 21 6 5.3070 2.7407 4.1266 22 6 5.8796 1.8166 3.2650 23 6 7.0919 1.2355 3.5828 24 6 7.7407 1.5830 4.7555 25 9 8.9291 1.0184 5.0623 26 6 7.1728 2.5091 5.6140 27 6 5.9581 3.0879 5.3011 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9480 0.9289 -0.9612 32 1 3.9634 0.6455 0.7960 33 1 3.3930 6.2750 0.8001 34 1 2.4731 1.2081 3.6134 35 1 2.6635 1.0056 1.8553 36 1 4.0669 0.8045 2.9316 37 1 2.3720 4.7013 2.4719 38 1 1.7429 3.3876 1.4489 39 1 1.4510 3.3660 3.2047 40 1 5.3761 1.5490 2.3477 41 1 7.5360 0.5130 2.9140 42 1 7.6801 2.7796 6.5282 43 1 5.5156 3.8106 5.9708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353567395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:38 Heat of formation + Delta-G solvation = -114.085291 kcal Electronic energy + Delta-G solvation = -32100.777069 eV Core-core repulsion = 27643.167118 eV Total energy + Delta-G solvation = -4457.609951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.50367 -40.94919 -39.82852 -38.15747 -36.67424 -35.94445 -34.45104 -32.81350 -31.83364 -30.79215 -29.08058 -28.63113 -26.85930 -26.19259 -24.97792 -23.19703 -22.23460 -21.84368 -20.63627 -19.67556 -17.85059 -17.35114 -17.09416 -16.72565 -16.30512 -16.16856 -16.12343 -15.33428 -15.16891 -14.98211 -14.58710 -14.46772 -13.94628 -13.72589 -13.47268 -13.45798 -13.25584 -13.10773 -12.84706 -12.29473 -12.22882 -12.05300 -11.83137 -11.64723 -11.41616 -11.36675 -11.13962 -11.11026 -10.99966 -10.96474 -10.70384 -10.39488 -10.32240 -10.21478 -10.02791 -9.85202 -9.19863 -8.77489 -8.55452 -7.73647 -7.31626 -6.29377 -3.84686 1.53726 1.63497 2.74642 3.06217 3.19926 3.29231 3.29759 3.57520 3.70021 3.98119 4.12837 4.57027 4.65860 5.03786 5.09248 5.13337 5.24069 5.30818 5.32454 5.35951 5.40246 5.43758 5.49600 5.58500 5.69554 5.73446 5.77595 5.92659 5.96680 6.11765 6.20345 6.25060 6.44297 6.49156 6.56165 6.68063 6.70440 6.95047 7.11514 7.37935 7.49505 7.84983 7.93682 8.39957 8.78670 9.00105 9.27609 9.73852 10.81254 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.005182 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.533036 B = 5402.301905 C = 6745.330848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.376 6.376 3 C 0.419 3.581 4 O -0.467 6.467 5 C 0.121 3.879 6 N -0.499 5.499 7 C -0.299 4.299 8 H 0.085 0.915 9 C 0.039 3.961 10 N -0.864 5.864 11 Si 0.931 3.069 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.546 3.454 16 O -0.498 6.498 17 C 0.100 3.900 18 C -0.208 4.208 19 C -0.128 4.128 20 O -0.287 6.287 21 C 0.152 3.848 22 C -0.155 4.155 23 C -0.118 4.118 24 C 0.042 3.958 25 F -0.150 7.150 26 C -0.119 4.119 27 C -0.137 4.137 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.272 0.728 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.033 0.967 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 -10.158 4.473 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.294 6.294 3 C 0.258 3.742 4 O -0.351 6.351 5 C -0.007 4.007 6 N -0.227 5.227 7 C -0.425 4.425 8 H 0.103 0.897 9 C -0.167 4.167 10 N -0.502 5.502 11 Si 0.758 3.242 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.201 1.201 15 C 0.335 3.665 16 O -0.372 6.372 17 C 0.058 3.942 18 C -0.264 4.264 19 C -0.184 4.184 20 O -0.199 6.199 21 C 0.106 3.894 22 C -0.173 4.173 23 C -0.137 4.137 24 C 0.023 3.977 25 F -0.129 7.129 26 C -0.138 4.138 27 C -0.156 4.156 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.052 0.948 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.127 -9.184 4.807 10.581 hybrid contribution -0.261 0.594 -0.851 1.070 sum -2.388 -8.589 3.956 9.753 Atomic orbital electron populations 1.23106 0.78102 1.02629 1.02178 1.86607 1.22359 1.35362 1.85064 1.25821 0.93890 0.81308 0.73171 1.90575 1.66298 1.35740 1.42461 1.21716 0.85706 0.89123 1.04182 1.42800 1.63688 1.07446 1.08741 1.19158 1.49953 0.86631 0.86796 0.89698 1.25196 0.95912 0.98268 0.97307 1.69397 1.44673 1.16408 1.19762 0.85941 0.78578 0.79361 0.80295 1.20283 1.21018 1.20098 1.19563 0.85381 0.78296 0.83216 1.90555 1.21589 1.40895 1.84123 1.22138 0.94620 0.93860 0.83631 1.23262 1.03193 0.96232 1.03748 1.22049 0.90599 1.02576 1.03188 1.86206 1.30275 1.61048 1.42360 1.18928 0.86316 0.91245 0.92925 1.21452 0.97058 0.98971 0.99837 1.20855 0.95615 1.01353 0.95852 1.17460 0.83836 0.99380 0.97069 1.91431 1.44123 1.84063 1.93302 1.20752 0.95933 0.97243 0.99906 1.20151 0.95488 1.03284 0.96672 0.92366 0.89027 0.92409 0.87762 0.88729 0.91642 0.91146 0.90319 0.90734 0.89241 0.86755 0.94816 0.84493 0.85101 0.84823 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.38 -5.56 10.50 -39.25 -0.41 -5.98 16 3 C 0.42 7.47 5.49 36.01 0.20 7.67 16 4 O -0.47 -9.87 12.53 -18.75 -0.23 -10.10 16 5 C 0.12 2.15 5.43 -5.20 -0.03 2.12 16 6 N -0.50 -11.45 2.00 -116.10 -0.23 -11.69 16 7 C -0.30 -7.58 9.02 -14.93 -0.13 -7.72 16 8 H 0.09 2.05 7.84 -52.48 -0.41 1.64 16 9 C 0.04 1.01 5.17 -17.47 -0.09 0.92 16 10 N -0.86 -23.47 8.57 55.50 0.48 -23.00 16 11 Si 0.93 21.05 29.56 -169.99 -5.03 16.03 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 C 0.55 13.00 1.49 -10.99 -0.02 12.99 16 16 O -0.50 -13.59 13.74 -14.36 -0.20 -13.79 16 17 C 0.10 2.10 1.01 -91.77 -0.09 2.00 16 18 C -0.21 -3.51 6.85 37.16 0.25 -3.26 16 19 C -0.13 -2.77 7.85 37.16 0.29 -2.48 16 20 O -0.29 -6.15 9.64 -39.46 -0.38 -6.53 16 21 C 0.15 2.99 5.55 -39.23 -0.22 2.77 16 22 C -0.15 -2.91 5.65 -39.44 -0.22 -3.14 16 23 C -0.12 -1.98 10.02 -39.54 -0.40 -2.38 16 24 C 0.04 0.68 7.30 -39.42 -0.29 0.39 16 25 F -0.15 -2.38 17.27 2.25 0.04 -2.34 16 26 C -0.12 -1.83 10.02 -39.53 -0.40 -2.22 16 27 C -0.14 -2.31 9.98 -39.44 -0.39 -2.70 16 28 H 0.06 0.70 8.13 -51.92 -0.42 0.28 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.10 1.63 8.11 -51.93 -0.42 1.21 16 32 H 0.09 1.44 5.43 -51.92 -0.28 1.16 16 33 H 0.27 7.25 8.32 -40.82 -0.34 6.91 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.29 2.87 -51.93 -0.15 1.14 16 36 H 0.07 1.17 4.73 -51.93 -0.25 0.92 16 37 H 0.09 2.16 6.68 -51.93 -0.35 1.81 16 38 H 0.11 2.66 4.29 -51.93 -0.22 2.44 16 39 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 40 H 0.14 2.65 3.28 -52.49 -0.17 2.48 16 41 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 42 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -31.65 342.94 -6.03 -37.68 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.77 Total: 8.09 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.47 Total: 6.45 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.24 Total: -34.68 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.22 Total: -36.40 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.65 -6.03 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353567395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.402 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds