Wall clock time and date at job start Tue Mar 31 2020 22:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00139 * 2 1 4 4 O 1.20825 * 119.99899 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00294 * 180.02562 * 3 2 1 6 6 N 1.46491 * 109.47349 * 189.16342 * 5 3 2 7 7 C 1.37100 * 120.00298 * 279.56424 * 6 5 3 8 8 H 1.08007 * 119.99559 * 334.14565 * 7 6 5 9 9 C 1.38949 * 120.00062 * 154.13761 * 7 6 5 10 10 N 1.31406 * 120.00355 * 352.50496 * 9 7 6 11 11 Si 1.86801 * 119.99607 * 172.50245 * 9 7 6 12 12 H 1.48495 * 109.47271 * 59.99922 * 11 9 7 13 13 H 1.48506 * 109.47048 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47055 * 299.99868 * 11 9 7 15 15 C 1.34777 * 120.00054 * 99.56043 * 6 5 3 16 16 O 1.21296 * 120.00004 * 125.62497 * 15 6 5 17 17 C 1.50695 * 120.00609 * 305.63013 * 15 6 5 18 18 C 1.53002 * 109.47067 * 57.84252 * 17 15 6 19 19 C 1.53008 * 109.46891 * 297.84989 * 17 15 6 20 20 O 1.42898 * 109.47631 * 177.84758 * 17 15 6 21 21 C 1.35943 * 116.99833 * 301.86434 * 20 17 15 22 22 C 1.38712 * 120.03195 * 3.68876 * 21 20 17 23 23 C 1.38146 * 119.97144 * 180.24557 * 22 21 20 24 24 C 1.38454 * 120.02998 * 359.47974 * 23 22 21 25 25 F 1.35099 * 119.97244 * 180.29075 * 24 23 22 26 26 C 1.38461 * 120.06109 * 0.27343 * 24 23 22 27 27 C 1.38147 * 120.02605 * 359.97438 * 26 24 23 28 28 H 1.09007 * 109.47204 * 60.00323 * 1 2 3 29 29 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47520 * 300.00537 * 1 2 3 31 31 H 1.09000 * 109.47054 * 69.15570 * 5 3 2 32 32 H 1.09008 * 109.46314 * 309.16385 * 5 3 2 33 33 H 0.96996 * 120.00198 * 185.00528 * 10 9 7 34 34 H 1.08998 * 109.47515 * 180.96474 * 18 17 15 35 35 H 1.08996 * 109.47333 * 300.96606 * 18 17 15 36 36 H 1.08999 * 109.47310 * 60.96950 * 18 17 15 37 37 H 1.09003 * 109.46375 * 291.79784 * 19 17 15 38 38 H 1.08997 * 109.47289 * 51.79844 * 19 17 15 39 39 H 1.09004 * 109.46847 * 171.80677 * 19 17 15 40 40 H 1.08001 * 120.01341 * 0.03001 * 22 21 20 41 41 H 1.08002 * 119.98648 * 179.75088 * 23 22 21 42 42 H 1.07995 * 119.98413 * 180.02562 * 26 24 23 43 43 H 1.08006 * 120.01116 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9827 2.6620 0.2195 7 6 3.9783 3.5527 -0.8228 8 1 4.0837 3.1973 -1.8372 9 6 3.8379 4.9125 -0.5740 10 7 3.5626 5.3335 0.6400 11 14 4.0408 6.1423 -1.9654 12 1 3.0345 5.8651 -3.0217 13 1 3.8441 7.5183 -1.4425 14 1 5.4057 6.0212 -2.5380 15 6 4.3702 3.0627 1.4466 16 8 5.4498 3.5945 1.5982 17 6 3.4623 2.8501 2.6304 18 6 3.1435 1.3600 2.7675 19 6 2.1636 3.6325 2.4241 20 8 4.1117 3.3096 3.8175 21 6 5.3070 2.7407 4.1266 22 6 5.8796 1.8166 3.2650 23 6 7.0919 1.2355 3.5828 24 6 7.7407 1.5830 4.7555 25 9 8.9291 1.0184 5.0623 26 6 7.1728 2.5091 5.6140 27 6 5.9581 3.0879 5.3011 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9480 0.9289 -0.9612 32 1 3.9634 0.6455 0.7960 33 1 3.3930 6.2750 0.8001 34 1 2.4731 1.2081 3.6134 35 1 2.6635 1.0056 1.8553 36 1 4.0669 0.8045 2.9316 37 1 2.3720 4.7013 2.4719 38 1 1.7429 3.3876 1.4489 39 1 1.4510 3.3660 3.2047 40 1 5.3761 1.5490 2.3477 41 1 7.5360 0.5130 2.9140 42 1 7.6801 2.7796 6.5282 43 1 5.5156 3.8106 5.9708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353567395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:37 Heat of formation + Delta-G solvation = -131.841620 kcal Electronic energy + Delta-G solvation = -32101.547041 eV Core-core repulsion = 27643.167118 eV Total energy + Delta-G solvation = -4458.379923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.76951 -42.49519 -41.21582 -39.68488 -38.14194 -37.37236 -36.19735 -34.46694 -33.56845 -32.11708 -30.49542 -30.01268 -28.21375 -27.62093 -26.76833 -24.62913 -23.63341 -23.35099 -22.03103 -21.29690 -19.42188 -18.73002 -18.60229 -18.21981 -17.69016 -17.61699 -17.52225 -16.76151 -16.72312 -16.46380 -16.20612 -15.93085 -15.44212 -15.33849 -14.89640 -14.78591 -14.66153 -14.39950 -14.12203 -13.67635 -13.66740 -13.54165 -13.39424 -13.16102 -12.96260 -12.85021 -12.79708 -12.74840 -12.63218 -12.45336 -12.34533 -12.13288 -11.70559 -11.61975 -11.54908 -11.42678 -10.98189 -10.33492 -10.05363 -9.44381 -8.84187 -8.22444 -5.79095 0.24360 0.29091 1.34252 1.37988 1.44304 1.49798 1.68498 1.94500 2.22597 2.34974 2.63940 2.88323 3.25478 3.35996 3.72135 3.75757 3.85221 3.87007 4.06083 4.07684 4.16184 4.25132 4.34909 4.41731 4.43879 4.45308 4.53043 4.59463 4.66060 4.79813 4.82000 4.91682 4.99433 5.12448 5.15584 5.16408 5.33322 5.42956 5.48033 5.78615 5.81541 6.01980 6.41099 6.90927 7.00681 7.20204 7.47738 7.90340 8.86521 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.005182 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.533036 B = 5402.301905 C = 6745.330848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.429 3.571 4 O -0.503 6.503 5 C 0.114 3.886 6 N -0.515 5.515 7 C -0.306 4.306 8 H 0.091 0.909 9 C -0.015 4.015 10 N -0.890 5.890 11 Si 0.984 3.016 12 H -0.266 1.266 13 H -0.292 1.292 14 H -0.277 1.277 15 C 0.550 3.450 16 O -0.546 6.546 17 C 0.102 3.898 18 C -0.198 4.198 19 C -0.121 4.121 20 O -0.307 6.307 21 C 0.122 3.878 22 C -0.167 4.167 23 C -0.121 4.121 24 C 0.040 3.960 25 F -0.146 7.146 26 C -0.109 4.109 27 C -0.140 4.140 28 H 0.054 0.946 29 H 0.133 0.867 30 H 0.056 0.944 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.263 0.737 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.128 0.872 41 H 0.151 0.849 42 H 0.169 0.831 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 -12.384 4.989 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.271 3.729 4 O -0.390 6.390 5 C -0.013 4.013 6 N -0.243 5.243 7 C -0.433 4.433 8 H 0.109 0.891 9 C -0.216 4.216 10 N -0.530 5.530 11 Si 0.810 3.190 12 H -0.191 1.191 13 H -0.218 1.218 14 H -0.203 1.203 15 C 0.341 3.659 16 O -0.423 6.423 17 C 0.060 3.940 18 C -0.255 4.255 19 C -0.178 4.178 20 O -0.220 6.220 21 C 0.076 3.924 22 C -0.186 4.186 23 C -0.140 4.140 24 C 0.021 3.979 25 F -0.125 7.125 26 C -0.127 4.127 27 C -0.159 4.159 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.145 0.855 41 H 0.168 0.832 42 H 0.186 0.814 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.111 -11.475 5.303 12.816 hybrid contribution -0.246 1.130 -0.990 1.522 sum -2.357 -10.345 4.313 11.453 Atomic orbital electron populations 1.23454 0.75839 1.05300 1.01996 1.86554 1.24308 1.33123 1.84327 1.25362 0.93711 0.81536 0.72333 1.90582 1.67013 1.37123 1.44249 1.21822 0.86335 0.86592 1.06524 1.42781 1.64616 1.08737 1.08201 1.19456 1.48927 0.87266 0.87669 0.89085 1.25955 0.96512 1.00026 0.99146 1.69553 1.46631 1.15714 1.21099 0.85112 0.78421 0.77157 0.78286 1.19095 1.21777 1.20258 1.20062 0.84856 0.76840 0.84137 1.90508 1.23656 1.43014 1.85084 1.22021 0.93296 0.96137 0.82585 1.23187 1.04292 0.93269 1.04739 1.21908 0.91780 1.00710 1.03399 1.86140 1.31429 1.62192 1.42236 1.19305 0.86333 0.92339 0.94387 1.21390 0.97961 0.99664 0.99553 1.21067 0.94968 1.01501 0.96482 1.17595 0.83895 0.99401 0.97054 1.91446 1.43796 1.83989 1.93222 1.21100 0.95059 0.95873 1.00695 1.20456 0.95835 1.03443 0.96118 0.92749 0.84887 0.92543 0.85493 0.86034 0.92729 0.89247 0.89893 0.89462 0.92475 0.87989 0.92444 0.85488 0.83175 0.81354 0.83069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.37 -9.86 10.50 -51.40 -0.54 -10.40 16 3 C 0.43 14.71 5.49 71.24 0.39 15.10 16 4 O -0.50 -21.10 12.53 21.97 0.28 -20.83 16 5 C 0.11 3.90 5.43 85.64 0.46 4.37 16 6 N -0.52 -23.76 2.00 -639.60 -1.28 -25.04 16 7 C -0.31 -15.72 9.02 84.04 0.76 -14.96 16 8 H 0.09 4.40 7.84 -2.91 -0.02 4.38 16 9 C -0.02 -0.81 5.17 84.93 0.44 -0.37 16 10 N -0.89 -50.38 8.57 21.66 0.19 -50.19 16 11 Si 0.98 44.27 29.56 68.60 2.03 46.30 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 15 C 0.55 26.59 1.49 87.66 0.13 26.72 16 16 O -0.55 -30.67 13.74 15.95 0.22 -30.45 16 17 C 0.10 4.30 1.01 -11.54 -0.01 4.29 16 18 C -0.20 -6.43 6.85 71.98 0.49 -5.93 16 19 C -0.12 -5.38 7.85 71.98 0.56 -4.82 16 20 O -0.31 -13.31 9.64 -73.88 -0.71 -14.03 16 21 C 0.12 4.75 5.55 22.50 0.12 4.87 16 22 C -0.17 -6.20 5.65 22.36 0.13 -6.08 16 23 C -0.12 -3.91 10.02 22.30 0.22 -3.68 16 24 C 0.04 1.21 7.30 22.37 0.16 1.37 16 25 F -0.15 -4.23 17.27 44.97 0.78 -3.46 16 26 C -0.11 -3.05 10.02 22.30 0.22 -2.83 16 27 C -0.14 -4.52 9.98 22.36 0.22 -4.30 16 28 H 0.05 1.20 8.13 -2.38 -0.02 1.18 16 29 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 31 H 0.13 3.74 8.11 -2.39 -0.02 3.72 16 32 H 0.12 3.48 5.43 -2.38 -0.01 3.46 16 33 H 0.26 14.74 8.32 -92.71 -0.77 13.96 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.08 2.58 2.87 -2.39 -0.01 2.57 16 36 H 0.09 2.60 4.73 -2.39 -0.01 2.59 16 37 H 0.06 2.88 6.68 -2.39 -0.02 2.87 16 38 H 0.10 4.85 4.29 -2.39 -0.01 4.84 16 39 H 0.06 2.17 8.13 -2.38 -0.02 2.15 16 40 H 0.13 4.88 3.28 -2.91 -0.01 4.87 16 41 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 42 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -71.19 342.94 7.54 -63.66 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 1.07 Total: 28.92 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 5.51 Total: 15.53 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.09 Total: -75.24 kcal Atomic # 8 Polarization: -74.95 SS G_CDS: -0.76 Total: -75.70 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -71.19 7.54 -63.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353567395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.186 kcal (2) G-P(sol) polarization free energy of solvation -71.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds