Wall clock time and date at job start Tue Mar 31 2020 22:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46762 * 179.97438 * 16 14 13 18 18 S 1.81404 * 109.46951 * 179.97438 * 17 16 14 19 19 O 1.42109 * 110.54402 * 291.62164 * 18 17 16 20 20 O 1.42097 * 110.54377 * 68.37538 * 18 17 16 21 21 C 1.76202 * 104.44887 * 180.02562 * 18 17 16 22 22 C 1.38234 * 119.99617 * 269.72441 * 21 18 17 23 23 C 1.38237 * 119.99964 * 179.74412 * 22 21 18 24 24 C 1.38241 * 119.99698 * 0.55441 * 23 22 21 25 25 C 1.50696 * 119.99749 * 179.72427 * 24 23 22 26 26 C 1.38235 * 120.00035 * 359.69707 * 24 23 22 27 27 C 1.38233 * 120.00246 * 90.00247 * 21 18 17 28 28 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 29 29 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 31 31 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 33 33 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 35 35 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 36 36 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 37 37 H 1.09003 * 109.47065 * 299.99222 * 17 16 14 38 38 H 1.08999 * 109.47620 * 60.00011 * 17 16 14 39 39 H 1.08000 * 120.00509 * 0.02562 * 22 21 18 40 40 H 1.07999 * 120.00495 * 180.27187 * 23 22 21 41 41 H 1.09003 * 109.47054 * 269.97150 * 25 24 23 42 42 H 1.08996 * 109.47343 * 29.98020 * 25 24 23 43 43 H 1.09004 * 109.46883 * 149.97765 * 25 24 23 44 44 H 1.07996 * 120.00190 * 179.97438 * 26 24 23 45 45 H 1.07999 * 119.99711 * 359.97438 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 6 -1.3821 3.8951 2.5210 18 16 -1.8620 4.7059 4.0711 19 8 -2.0167 3.7470 5.1085 20 8 -1.0984 5.8871 4.2732 21 6 -3.4974 5.2906 3.7735 22 6 -3.6951 6.5578 3.2578 23 6 -4.9778 7.0146 3.0193 24 6 -6.0632 6.2084 3.3073 25 6 -7.4618 6.7087 3.0532 26 6 -5.8657 4.9432 3.8279 27 6 -4.5827 4.4843 4.0611 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 -2.1133 34 1 2.2720 2.1230 1.9979 35 1 0.0680 2.6142 3.4688 36 1 0.7281 4.1539 2.8669 37 1 -1.4131 4.6194 1.7070 38 1 -2.0738 3.0799 2.3086 39 1 -2.8473 7.1893 3.0368 40 1 -5.1322 8.0029 2.6122 41 1 -7.8338 7.2155 3.9436 42 1 -7.4516 7.4062 2.2156 43 1 -8.1117 5.8662 2.8165 44 1 -6.7137 4.3135 4.0534 45 1 -4.4283 3.4959 4.4679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358063052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:36 Heat of formation + Delta-G solvation = -88.672123 kcal Electronic energy + Delta-G solvation = -26833.259294 eV Core-core repulsion = 22942.964516 eV Total energy + Delta-G solvation = -3890.294778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.70102 -39.40727 -37.27282 -36.12127 -35.56077 -33.44922 -33.18633 -32.38180 -31.42964 -31.42655 -27.82954 -27.64914 -25.07875 -23.25820 -22.66976 -22.23631 -20.72943 -19.67076 -19.22895 -18.29803 -17.34100 -16.53750 -16.48786 -15.92727 -15.74727 -15.65502 -15.36915 -15.04668 -14.75697 -14.43521 -14.27837 -13.93430 -13.85734 -13.42879 -12.98580 -12.79067 -12.74752 -12.56252 -12.45745 -12.42768 -12.24062 -12.16719 -12.01476 -11.85778 -11.54466 -11.47903 -11.18658 -11.08529 -10.94190 -10.80079 -10.63780 -9.96747 -9.63270 -9.47961 -9.42047 -9.28156 -9.20955 -8.79129 -8.14482 -6.24078 -4.26933 -0.17949 0.46585 0.92949 2.65174 3.03822 3.09813 3.20602 3.32672 3.36726 3.59843 3.93362 3.94676 4.28210 4.31509 4.32901 4.33853 4.53175 4.62767 4.87424 4.91856 5.06936 5.07466 5.09133 5.19363 5.22344 5.41638 5.45488 5.50658 5.57284 5.67835 5.72409 5.77661 5.91615 5.97896 6.04150 6.12807 6.46064 6.60717 6.64817 6.78835 6.89548 7.20657 7.24355 7.46403 8.08956 8.46525 8.71562 8.84920 9.36259 10.87892 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.002400 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.354830 B =11662.649840 C =12161.146695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.261 1.261 12 H -0.294 1.294 13 N -0.699 5.699 14 C 0.511 3.489 15 O -0.547 6.547 16 C -0.141 4.141 17 C -0.581 4.581 18 S 2.495 3.505 19 O -0.937 6.937 20 O -0.936 6.936 21 C -0.663 4.663 22 C -0.018 4.018 23 C -0.143 4.143 24 C -0.034 4.034 25 C -0.124 4.124 26 C -0.144 4.144 27 C -0.018 4.018 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.268 0.732 34 H 0.397 0.603 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.132 0.868 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.867 9.530 10.619 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.138 3.862 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.185 1.185 12 H -0.222 1.222 13 N -0.347 5.347 14 C 0.294 3.706 15 O -0.426 6.426 16 C -0.182 4.182 17 C -0.711 4.711 18 S 2.676 3.324 19 O -0.934 6.934 20 O -0.933 6.933 21 C -0.750 4.750 22 C -0.037 4.037 23 C -0.162 4.162 24 C -0.034 4.034 25 C -0.180 4.180 26 C -0.162 4.162 27 C -0.037 4.037 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.231 0.769 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.150 0.850 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.150 0.850 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.788 9.558 10.589 26.884 hybrid contribution -0.674 -0.534 -1.108 1.402 sum -23.462 9.025 9.481 26.866 Atomic orbital electron populations 1.21883 0.97001 0.99099 1.02193 1.22299 0.94326 0.99959 1.01241 1.19182 0.95730 0.88521 0.82742 0.93233 1.21048 0.88553 1.39918 1.07923 0.90092 1.24843 0.94877 0.95147 0.97681 1.69867 1.08678 1.44387 1.29807 0.86898 0.80915 0.79944 0.80923 1.20237 1.18515 1.22161 1.46175 1.14680 1.55627 1.18174 1.19951 0.82758 0.79281 0.88563 1.90667 1.51520 1.60009 1.40364 1.21453 0.94135 1.02707 0.99946 1.30042 1.05718 1.14281 1.21108 1.05487 0.74366 0.75330 0.77222 1.93572 1.85487 1.62862 1.51515 1.93575 1.69065 1.46155 1.84539 1.30560 1.22389 1.05002 1.17052 1.20996 0.98414 0.93052 0.91242 1.21198 0.92126 1.00443 1.02455 1.20297 0.96087 0.93690 0.93345 1.20944 0.92391 1.02050 1.02641 1.21189 0.97336 0.96176 1.01549 1.20984 0.91727 0.98768 0.92249 0.92889 0.94913 0.92947 0.92714 0.92177 0.92248 0.76927 0.87536 0.87375 0.83812 0.83921 0.83901 0.84997 0.90359 0.90892 0.90909 0.85023 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.52 37.16 0.32 -2.48 16 2 C -0.14 -3.01 5.11 -26.73 -0.14 -3.15 16 3 C 0.24 5.53 1.83 -69.08 -0.13 5.41 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 5 C -0.54 -14.16 9.31 -34.44 -0.32 -14.48 16 6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 9 Si 0.88 21.42 24.41 -169.99 -4.15 17.27 16 10 H -0.28 -6.48 6.83 56.52 0.39 -6.10 16 11 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 N -0.70 -13.00 5.02 -54.93 -0.28 -13.28 16 14 C 0.51 8.69 6.40 -10.98 -0.07 8.62 16 15 O -0.55 -10.87 13.12 5.56 0.07 -10.80 16 16 C -0.14 -1.69 5.71 -27.88 -0.16 -1.85 16 17 C -0.58 -6.02 5.27 37.16 0.20 -5.83 16 18 S 2.49 26.41 5.16 -107.50 -0.55 25.86 16 19 O -0.94 -12.09 17.12 -57.54 -0.99 -13.08 16 20 O -0.94 -12.25 17.12 -57.54 -0.99 -13.23 16 21 C -0.66 -6.60 5.66 -39.58 -0.22 -6.83 16 22 C -0.02 -0.17 9.47 -39.58 -0.37 -0.54 16 23 C -0.14 -1.15 9.70 -39.58 -0.38 -1.53 16 24 C -0.03 -0.26 5.88 -104.62 -0.62 -0.87 16 25 C -0.12 -0.58 10.01 36.00 0.36 -0.22 16 26 C -0.14 -1.14 9.70 -39.58 -0.38 -1.53 16 27 C -0.02 -0.17 9.47 -39.58 -0.37 -0.55 16 28 H 0.05 1.08 7.85 -51.93 -0.41 0.68 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.97 5.65 -51.93 -0.29 0.67 16 31 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.40 6.43 8.54 -40.82 -0.35 6.08 16 35 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.14 1.40 8.10 -51.92 -0.42 0.98 16 38 H 0.14 1.35 8.10 -51.92 -0.42 0.93 16 39 H 0.14 1.15 7.57 -52.49 -0.40 0.75 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 43 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.14 1.12 7.57 -52.49 -0.40 0.72 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -35.78 376.37 -9.42 -45.20 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.60 Total: 5.44 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -2.39 Total: -23.76 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.50 Total: -38.58 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.90 Total: -37.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.15 Total: 17.27 kcal Atomic # 16 Polarization: 26.41 SS G_CDS: -0.55 Total: 25.86 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.78 -9.42 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358063052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.470 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds