Wall clock time and date at job start Tue Mar 31 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46762 * 179.97438 * 16 14 13 18 18 S 1.81404 * 109.46951 * 179.97438 * 17 16 14 19 19 O 1.42109 * 110.54402 * 291.62164 * 18 17 16 20 20 O 1.42097 * 110.54377 * 68.37538 * 18 17 16 21 21 C 1.76202 * 104.44887 * 180.02562 * 18 17 16 22 22 C 1.38234 * 119.99617 * 269.72441 * 21 18 17 23 23 C 1.38237 * 119.99964 * 179.74412 * 22 21 18 24 24 C 1.38241 * 119.99698 * 0.55441 * 23 22 21 25 25 C 1.50696 * 119.99749 * 179.72427 * 24 23 22 26 26 C 1.38235 * 120.00035 * 359.69707 * 24 23 22 27 27 C 1.38233 * 120.00246 * 90.00247 * 21 18 17 28 28 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 29 29 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 31 31 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 33 33 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 35 35 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 36 36 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 37 37 H 1.09003 * 109.47065 * 299.99222 * 17 16 14 38 38 H 1.08999 * 109.47620 * 60.00011 * 17 16 14 39 39 H 1.08000 * 120.00509 * 0.02562 * 22 21 18 40 40 H 1.07999 * 120.00495 * 180.27187 * 23 22 21 41 41 H 1.09003 * 109.47054 * 269.97150 * 25 24 23 42 42 H 1.08996 * 109.47343 * 29.98020 * 25 24 23 43 43 H 1.09004 * 109.46883 * 149.97765 * 25 24 23 44 44 H 1.07996 * 120.00190 * 179.97438 * 26 24 23 45 45 H 1.07999 * 119.99711 * 359.97438 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 6 -1.3821 3.8951 2.5210 18 16 -1.8620 4.7059 4.0711 19 8 -2.0167 3.7470 5.1085 20 8 -1.0984 5.8871 4.2732 21 6 -3.4974 5.2906 3.7735 22 6 -3.6951 6.5578 3.2578 23 6 -4.9778 7.0146 3.0193 24 6 -6.0632 6.2084 3.3073 25 6 -7.4618 6.7087 3.0532 26 6 -5.8657 4.9432 3.8279 27 6 -4.5827 4.4843 4.0611 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 -2.1133 34 1 2.2720 2.1230 1.9979 35 1 0.0680 2.6142 3.4688 36 1 0.7281 4.1539 2.8669 37 1 -1.4131 4.6194 1.7070 38 1 -2.0738 3.0799 2.3086 39 1 -2.8473 7.1893 3.0368 40 1 -5.1322 8.0029 2.6122 41 1 -7.8338 7.2155 3.9436 42 1 -7.4516 7.4062 2.2156 43 1 -8.1117 5.8662 2.8165 44 1 -6.7137 4.3135 4.0534 45 1 -4.4283 3.4959 4.4679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358063052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:35 Heat of formation + Delta-G solvation = -114.587793 kcal Electronic energy + Delta-G solvation = -26834.383082 eV Core-core repulsion = 22942.964516 eV Total energy + Delta-G solvation = -3891.418565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.85423 -40.29079 -38.20233 -37.23462 -37.05153 -34.42439 -34.24312 -33.99343 -32.96049 -32.03402 -29.52367 -28.26710 -26.25982 -24.43745 -23.86641 -22.89867 -22.25236 -21.20347 -20.02809 -19.40314 -18.71020 -17.82834 -17.62063 -17.34183 -16.73594 -16.62741 -16.32778 -16.11032 -15.94449 -15.39136 -15.31406 -14.85185 -14.79797 -14.71502 -14.51618 -14.00057 -13.73877 -13.66423 -13.49664 -13.24413 -13.21310 -13.12145 -13.09238 -13.07075 -12.96239 -12.76255 -12.49362 -12.34561 -12.09910 -11.99210 -11.84873 -11.59466 -11.38034 -11.22608 -10.86608 -10.70511 -10.06242 -10.04530 -9.76231 -8.37758 -6.43228 -1.00960 -0.18965 0.30989 1.26960 1.35032 1.44384 1.75643 1.85418 2.25804 2.33664 2.51797 2.91856 2.98086 3.13145 3.37858 3.72499 3.86216 3.87103 3.94989 3.95724 4.25305 4.32065 4.33968 4.35556 4.38858 4.51830 4.55436 4.67563 4.70081 4.78901 4.84327 4.86657 5.01127 5.03041 5.09287 5.09424 5.13634 5.24120 5.24307 5.41956 5.48640 5.53388 5.66938 5.88490 6.14465 6.59613 6.88566 7.19692 7.45865 8.77363 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.002400 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.354830 B =11662.649840 C =12161.146695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.248 3.752 4 H 0.025 0.975 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.938 3.062 10 H -0.261 1.261 11 H -0.259 1.259 12 H -0.295 1.295 13 N -0.702 5.702 14 C 0.510 3.490 15 O -0.575 6.575 16 C -0.143 4.143 17 C -0.578 4.578 18 S 2.520 3.480 19 O -0.961 6.961 20 O -0.964 6.964 21 C -0.675 4.675 22 C -0.037 4.037 23 C -0.152 4.152 24 C -0.037 4.037 25 C -0.123 4.123 26 C -0.151 4.151 27 C -0.035 4.035 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.269 0.731 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.155 0.845 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.679 9.498 11.097 29.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.043 0.957 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.172 4.172 8 N -0.573 5.573 9 Si 0.765 3.235 10 H -0.187 1.187 11 H -0.183 1.183 12 H -0.223 1.223 13 N -0.352 5.352 14 C 0.296 3.704 15 O -0.456 6.456 16 C -0.184 4.184 17 C -0.708 4.708 18 S 2.704 3.296 19 O -0.959 6.959 20 O -0.961 6.961 21 C -0.764 4.764 22 C -0.055 4.055 23 C -0.170 4.170 24 C -0.037 4.037 25 C -0.179 4.179 26 C -0.169 4.169 27 C -0.054 4.054 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.171 0.829 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.172 0.828 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -25.594 9.529 11.110 29.483 hybrid contribution 0.139 -0.428 -1.212 1.293 sum -25.455 9.101 9.898 28.788 Atomic orbital electron populations 1.21785 0.95056 1.00639 1.01805 1.22224 0.96020 0.98472 1.01062 1.18803 0.93127 0.89753 0.84030 0.95738 1.21321 0.90494 1.38440 1.06906 0.92497 1.25576 0.95741 0.95974 0.99943 1.69983 1.10307 1.46188 1.30832 0.86017 0.79319 0.79904 0.78247 1.18661 1.18312 1.22280 1.46038 1.15913 1.56082 1.17152 1.20680 0.81544 0.78325 0.89849 1.90655 1.52136 1.60845 1.41917 1.21560 0.95422 1.03726 0.97677 1.30029 1.04993 1.14747 1.21060 1.04542 0.74204 0.74275 0.76599 1.93532 1.86004 1.63509 1.52832 1.93533 1.70308 1.47230 1.85075 1.30340 1.21683 1.05683 1.18644 1.21232 0.99461 0.93109 0.91746 1.21536 0.91761 1.01548 1.02170 1.20708 0.97421 0.93438 0.92160 1.21014 0.90703 1.02710 1.03472 1.21541 0.97561 0.96783 1.01064 1.21241 0.92222 0.99269 0.92656 0.94375 0.92369 0.92243 0.93949 0.91250 0.92139 0.75611 0.84847 0.85391 0.83252 0.82884 0.83397 0.82889 0.89303 0.89972 0.89885 0.82754 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 8.52 71.98 0.61 -4.34 16 2 C -0.14 -5.80 5.11 30.60 0.16 -5.64 16 3 C 0.25 11.28 1.83 44.24 0.08 11.36 16 4 H 0.02 1.25 6.63 -2.39 -0.02 1.24 16 5 C -0.53 -28.55 9.31 25.60 0.24 -28.31 16 6 H 0.06 3.24 7.98 -2.91 -0.02 3.22 16 7 C 0.03 1.53 5.45 84.65 0.46 1.99 16 8 N -0.93 -55.77 13.96 21.45 0.30 -55.47 16 9 Si 0.94 44.32 24.41 68.60 1.67 45.99 16 10 H -0.26 -11.62 6.83 99.48 0.68 -10.94 16 11 H -0.26 -12.03 6.53 99.48 0.65 -11.38 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 13 N -0.70 -25.56 5.02 -446.10 -2.24 -27.80 16 14 C 0.51 16.64 6.40 87.66 0.56 17.20 16 15 O -0.57 -22.21 13.12 -3.01 -0.04 -22.25 16 16 C -0.14 -3.14 5.71 29.85 0.17 -2.97 16 17 C -0.58 -11.04 5.27 71.98 0.38 -10.66 16 18 S 2.52 50.95 5.16 -56.49 -0.29 50.66 16 19 O -0.96 -23.86 17.12 -127.65 -2.19 -26.05 16 20 O -0.96 -24.67 17.12 -127.65 -2.19 -26.86 16 21 C -0.67 -12.82 5.66 22.27 0.13 -12.70 16 22 C -0.04 -0.65 9.47 22.27 0.21 -0.44 16 23 C -0.15 -2.17 9.70 22.27 0.22 -1.95 16 24 C -0.04 -0.48 5.88 -19.87 -0.12 -0.60 16 25 C -0.12 -0.81 10.01 71.23 0.71 -0.10 16 26 C -0.15 -2.10 9.70 22.27 0.22 -1.88 16 27 C -0.04 -0.60 9.47 22.27 0.21 -0.39 16 28 H 0.04 1.49 7.85 -2.39 -0.02 1.47 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 2.06 5.65 -2.39 -0.01 2.05 16 31 H 0.04 1.87 3.22 -2.38 -0.01 1.86 16 32 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.41 12.90 8.54 -92.71 -0.79 12.11 16 35 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.15 2.71 8.10 -2.39 -0.02 2.69 16 38 H 0.15 2.62 8.10 -2.39 -0.02 2.60 16 39 H 0.15 2.31 7.57 -2.91 -0.02 2.28 16 40 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 43 H 0.08 0.40 8.09 -2.38 -0.02 0.38 16 44 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.15 2.19 7.57 -2.91 -0.02 2.17 16 Total: -1.00 -77.17 376.37 -0.60 -77.77 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.13 Total: 23.45 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 4.24 Total: -39.44 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.94 Total: -83.27 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: -4.41 Total: -75.16 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.67 Total: 45.99 kcal Atomic # 16 Polarization: 50.95 SS G_CDS: -0.29 Total: 50.66 kcal Total: -77.17 -0.60 -77.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358063052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.815 kcal (2) G-P(sol) polarization free energy of solvation -77.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds