Wall clock time and date at job start Tue Mar 31 2020 22:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47078 * 2 1 4 4 H 1.09001 * 109.46943 * 305.18119 * 3 2 1 5 5 C 1.50701 * 109.46946 * 185.18209 * 3 2 1 6 6 H 1.08000 * 120.00159 * 239.99393 * 5 3 2 7 7 C 1.37881 * 120.00050 * 59.99939 * 5 3 2 8 8 N 1.31514 * 119.99952 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99840 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47063 * 60.00032 * 9 7 5 11 11 H 1.48497 * 109.47094 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47327 * 299.99790 * 9 7 5 13 13 N 1.46494 * 109.47297 * 65.17859 * 3 2 1 14 14 S 1.65603 * 119.99990 * 215.40244 * 13 3 2 15 15 O 1.42108 * 106.40293 * 309.84981 * 14 13 3 16 16 O 1.42105 * 106.40149 * 176.93476 * 14 13 3 17 17 C 1.76192 * 107.21812 * 63.39101 * 14 13 3 18 18 C 1.38409 * 119.82428 * 84.40877 * 17 14 13 19 19 C 1.37888 * 120.17004 * 180.25681 * 18 17 14 20 20 C 1.39853 * 119.82543 * 359.51478 * 19 18 17 21 21 C 1.47164 * 120.17224 * 180.21109 * 20 19 18 22 22 O 1.21253 * 120.00330 * 180.29366 * 21 20 19 23 23 C 1.50706 * 120.00073 * 0.29745 * 21 20 19 24 24 C 1.52997 * 109.47039 * 154.99974 * 23 21 20 25 25 C 1.52999 * 109.46795 * 274.99679 * 23 21 20 26 26 C 1.39851 * 119.65601 * 0.50171 * 20 19 18 27 27 C 1.37885 * 119.82744 * 359.73125 * 26 20 19 28 28 H 1.09002 * 109.47215 * 304.40181 * 1 2 3 29 29 H 1.08992 * 109.46831 * 64.40563 * 1 2 3 30 30 H 1.09000 * 109.46874 * 184.40238 * 1 2 3 31 31 H 1.08996 * 109.47337 * 239.99430 * 2 1 3 32 32 H 1.09000 * 109.47120 * 119.99347 * 2 1 3 33 33 H 0.96998 * 119.99629 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00261 * 35.41148 * 13 3 2 35 35 H 1.07996 * 119.91543 * 359.97438 * 18 17 14 36 36 H 1.08004 * 120.08633 * 179.74981 * 19 18 17 37 37 H 1.09000 * 109.46758 * 34.99754 * 23 21 20 38 38 H 1.09000 * 109.47525 * 60.00250 * 24 23 21 39 39 H 1.09001 * 109.47072 * 179.97438 * 24 23 21 40 40 H 1.09000 * 109.47358 * 299.99760 * 24 23 21 41 41 H 1.09000 * 109.47365 * 300.00132 * 25 23 21 42 42 H 1.09005 * 109.46808 * 60.00249 * 25 23 21 43 43 H 1.08997 * 109.47099 * 179.97438 * 25 23 21 44 44 H 1.08002 * 120.08938 * 179.70456 * 26 20 19 45 45 H 1.07998 * 119.92024 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 -0.8400 5 6 3.5415 1.4444 -0.1283 6 1 4.1492 1.8882 0.6464 7 6 4.1396 0.8796 -1.2349 8 7 3.3997 0.3388 -2.1781 9 14 6.0008 0.8826 -1.3942 10 1 6.5968 0.1475 -0.2498 11 1 6.3899 0.2194 -2.6646 12 1 6.4953 2.2828 -1.3947 13 7 1.6561 2.0962 1.2536 14 16 1.2498 3.7016 1.2596 15 8 2.2924 4.3820 0.5745 16 8 0.8626 4.0125 2.5911 17 6 -0.1953 3.8776 0.2672 18 6 -1.4433 3.6545 0.8227 19 6 -2.5786 3.7851 0.0512 20 6 -2.4674 4.1537 -1.2932 21 6 -3.6744 4.2998 -2.1224 22 8 -3.5742 4.6144 -3.2891 23 6 -5.0353 4.0585 -1.5214 24 6 -6.0880 4.8359 -2.3141 25 6 -5.3582 2.5639 -1.5741 26 6 -1.2029 4.3769 -1.8472 27 6 -0.0767 4.2376 -1.0640 28 1 -0.3634 0.5806 0.8479 29 1 -0.3633 0.4439 -0.9268 30 1 -0.3633 -1.0246 0.0789 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8205 -0.0588 -2.9564 34 1 1.6401 1.5887 2.0800 35 1 -1.5277 3.3731 1.8620 36 1 -3.5515 3.6068 0.4851 37 1 -5.0393 4.3948 -0.4846 38 1 -6.0839 4.4995 -3.3508 39 1 -7.0723 4.6610 -1.8797 40 1 -5.8579 5.9007 -2.2766 41 1 -5.3540 2.2275 -2.6108 42 1 -4.6081 2.0100 -1.0093 43 1 -6.3422 2.3892 -1.1390 44 1 -1.1086 4.6573 -2.8860 45 1 0.9006 4.4092 -1.4903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358213784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:22 Heat of formation + Delta-G solvation = -101.238194 kcal Electronic energy + Delta-G solvation = -28036.467301 eV Core-core repulsion = 24145.627618 eV Total energy + Delta-G solvation = -3890.839683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.41731 -38.39827 -36.72564 -35.99011 -35.28022 -34.90038 -32.21446 -31.62335 -31.11422 -30.68202 -27.50213 -26.66540 -25.57441 -23.17668 -23.04446 -22.22722 -20.25220 -19.57619 -19.07237 -17.93403 -17.07912 -16.88378 -16.26022 -16.00528 -15.40530 -15.25242 -14.83783 -14.77997 -14.34452 -14.10349 -13.75730 -13.57209 -13.28877 -13.15722 -13.00932 -12.92490 -12.69662 -12.59382 -12.37979 -11.95547 -11.70294 -11.56352 -11.49675 -11.48173 -11.36319 -11.23497 -11.17102 -10.97915 -10.79630 -10.69050 -10.25388 -9.90468 -9.85839 -9.82859 -9.73989 -9.38516 -9.09883 -8.45149 -8.30452 -6.09518 -4.16290 0.18241 0.98173 1.26828 2.06652 3.31999 3.35695 3.40275 3.44517 3.63157 3.77277 4.25505 4.41490 4.43059 4.49901 4.67880 4.74711 4.80122 4.97258 5.17897 5.20525 5.25417 5.28762 5.41279 5.46297 5.48977 5.55676 5.62036 5.82063 5.87205 5.89907 5.97228 6.03678 6.09552 6.11651 6.18651 6.24636 6.42994 6.71396 6.72463 6.87783 7.04432 7.25134 7.51700 7.60036 7.84291 8.04184 8.20552 8.86885 9.50146 10.94743 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.003551 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.390209 B = 7883.224430 C = 8486.647774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.280 3.720 4 H 0.042 0.958 5 C -0.522 4.522 6 H 0.064 0.936 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.274 1.274 13 N -1.098 6.098 14 S 2.686 3.314 15 O -0.943 6.943 16 O -0.982 6.982 17 C -0.639 4.639 18 C -0.034 4.034 19 C -0.101 4.101 20 C -0.126 4.126 21 C 0.399 3.601 22 O -0.443 6.443 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.083 4.083 27 C -0.023 4.023 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.107 0.893 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.407 0.593 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.141 0.859 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.015 3.905 3.327 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.059 0.941 5 C -0.561 4.561 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.860 5.860 14 S 2.772 3.228 15 O -0.933 6.933 16 O -0.972 6.972 17 C -0.724 4.724 18 C -0.053 4.053 19 C -0.120 4.120 20 C -0.127 4.127 21 C 0.275 3.725 22 O -0.317 6.317 23 C -0.159 4.159 24 C -0.198 4.198 25 C -0.200 4.200 26 C -0.102 4.102 27 C -0.042 4.042 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.125 0.875 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.158 0.842 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.534 4.765 2.740 17.424 hybrid contribution 0.412 -0.579 -0.210 0.741 sum -16.122 4.186 2.530 16.848 Atomic orbital electron populations 1.21839 0.99076 0.99483 1.00172 1.21882 0.91896 0.99419 1.03441 1.18572 0.94914 0.90236 0.78618 0.94071 1.21484 0.91198 1.37599 1.05862 0.91734 1.24893 0.98535 0.94919 0.95444 1.69823 1.35167 1.38567 1.09570 0.86568 0.85227 0.78523 0.77228 1.20242 1.21296 1.19949 1.55515 1.82817 1.29367 1.18252 1.02157 0.73798 0.73802 0.73010 1.93617 1.51924 1.72528 1.75221 1.93528 1.84281 1.83879 1.35523 1.31630 1.19146 1.11764 1.09811 1.20845 0.90788 0.93763 0.99866 1.21480 0.99184 0.98527 0.92768 1.20751 0.94898 1.01836 0.95218 1.22612 0.90233 0.72153 0.87459 1.90517 1.89229 1.33993 1.17935 1.21628 0.93615 0.98701 1.01958 1.21711 0.97468 0.99850 1.00765 1.21750 1.02540 0.92598 1.03143 1.21544 0.91163 0.96850 1.00610 1.21105 1.00225 0.91456 0.91377 0.94319 0.93827 0.94489 0.87529 0.93956 0.92623 0.75937 0.83981 0.84469 0.88278 0.91573 0.91749 0.92392 0.91895 0.91571 0.91114 0.84168 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.85 37.16 0.37 -2.20 16 2 C -0.13 -2.64 5.37 -26.73 -0.14 -2.79 16 3 C 0.28 6.27 2.16 -69.09 -0.15 6.12 16 4 H 0.04 0.98 7.42 -51.93 -0.39 0.59 16 5 C -0.52 -13.54 8.84 -34.44 -0.30 -13.84 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -23.77 11.29 55.43 0.63 -23.14 16 9 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -1.10 -20.60 4.84 -5.89 -0.03 -20.63 16 14 S 2.69 49.37 5.64 -107.50 -0.61 48.76 16 15 O -0.94 -20.77 16.93 -57.17 -0.97 -21.74 16 16 O -0.98 -18.48 17.42 -57.17 -1.00 -19.47 16 17 C -0.64 -10.21 5.71 -39.46 -0.23 -10.43 16 18 C -0.03 -0.44 9.50 -39.65 -0.38 -0.82 16 19 C -0.10 -1.14 9.35 -39.11 -0.37 -1.50 16 20 C -0.13 -1.62 5.87 -105.07 -0.62 -2.23 16 21 C 0.40 4.75 6.23 -30.68 -0.19 4.56 16 22 O -0.44 -6.49 16.09 5.58 0.09 -6.40 16 23 C -0.14 -1.17 2.54 -91.77 -0.23 -1.40 16 24 C -0.14 -1.10 8.72 37.16 0.32 -0.78 16 25 C -0.14 -1.06 9.17 37.16 0.34 -0.72 16 26 C -0.08 -1.21 9.60 -39.11 -0.38 -1.58 16 27 C -0.02 -0.36 9.16 -39.65 -0.36 -0.73 16 28 H 0.04 0.59 7.64 -51.93 -0.40 0.19 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.11 2.54 5.95 -51.93 -0.31 2.23 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.41 6.65 8.84 -34.47 -0.30 6.34 16 35 H 0.14 1.60 7.74 -52.49 -0.41 1.19 16 36 H 0.14 1.04 6.48 -52.48 -0.34 0.70 16 37 H 0.10 0.64 6.76 -51.93 -0.35 0.29 16 38 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.14 1.93 7.65 -52.49 -0.40 1.53 16 45 H 0.15 2.52 7.49 -52.49 -0.39 2.13 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -31.63 385.52 -10.12 -41.76 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.62 Total: 5.95 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -2.41 Total: -26.76 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.60 Total: -43.77 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -1.87 Total: -47.62 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 49.37 SS G_CDS: -0.61 Total: 48.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.63 -10.12 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358213784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.482 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds