Wall clock time and date at job start Tue Mar 31 2020 22:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47078 * 2 1 4 4 H 1.09001 * 109.46943 * 305.18119 * 3 2 1 5 5 C 1.50701 * 109.46946 * 185.18209 * 3 2 1 6 6 H 1.08000 * 120.00159 * 239.99393 * 5 3 2 7 7 C 1.37881 * 120.00050 * 59.99939 * 5 3 2 8 8 N 1.31514 * 119.99952 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99840 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47063 * 60.00032 * 9 7 5 11 11 H 1.48497 * 109.47094 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47327 * 299.99790 * 9 7 5 13 13 N 1.46494 * 109.47297 * 65.17859 * 3 2 1 14 14 S 1.65603 * 119.99990 * 215.40244 * 13 3 2 15 15 O 1.42108 * 106.40293 * 309.84981 * 14 13 3 16 16 O 1.42105 * 106.40149 * 176.93476 * 14 13 3 17 17 C 1.76192 * 107.21812 * 63.39101 * 14 13 3 18 18 C 1.38409 * 119.82428 * 84.40877 * 17 14 13 19 19 C 1.37888 * 120.17004 * 180.25681 * 18 17 14 20 20 C 1.39853 * 119.82543 * 359.51478 * 19 18 17 21 21 C 1.47164 * 120.17224 * 180.21109 * 20 19 18 22 22 O 1.21253 * 120.00330 * 180.29366 * 21 20 19 23 23 C 1.50706 * 120.00073 * 0.29745 * 21 20 19 24 24 C 1.52997 * 109.47039 * 154.99974 * 23 21 20 25 25 C 1.52999 * 109.46795 * 274.99679 * 23 21 20 26 26 C 1.39851 * 119.65601 * 0.50171 * 20 19 18 27 27 C 1.37885 * 119.82744 * 359.73125 * 26 20 19 28 28 H 1.09002 * 109.47215 * 304.40181 * 1 2 3 29 29 H 1.08992 * 109.46831 * 64.40563 * 1 2 3 30 30 H 1.09000 * 109.46874 * 184.40238 * 1 2 3 31 31 H 1.08996 * 109.47337 * 239.99430 * 2 1 3 32 32 H 1.09000 * 109.47120 * 119.99347 * 2 1 3 33 33 H 0.96998 * 119.99629 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00261 * 35.41148 * 13 3 2 35 35 H 1.07996 * 119.91543 * 359.97438 * 18 17 14 36 36 H 1.08004 * 120.08633 * 179.74981 * 19 18 17 37 37 H 1.09000 * 109.46758 * 34.99754 * 23 21 20 38 38 H 1.09000 * 109.47525 * 60.00250 * 24 23 21 39 39 H 1.09001 * 109.47072 * 179.97438 * 24 23 21 40 40 H 1.09000 * 109.47358 * 299.99760 * 24 23 21 41 41 H 1.09000 * 109.47365 * 300.00132 * 25 23 21 42 42 H 1.09005 * 109.46808 * 60.00249 * 25 23 21 43 43 H 1.08997 * 109.47099 * 179.97438 * 25 23 21 44 44 H 1.08002 * 120.08938 * 179.70456 * 26 20 19 45 45 H 1.07998 * 119.92024 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 -0.8400 5 6 3.5415 1.4444 -0.1283 6 1 4.1492 1.8882 0.6464 7 6 4.1396 0.8796 -1.2349 8 7 3.3997 0.3388 -2.1781 9 14 6.0008 0.8826 -1.3942 10 1 6.5968 0.1475 -0.2498 11 1 6.3899 0.2194 -2.6646 12 1 6.4953 2.2828 -1.3947 13 7 1.6561 2.0962 1.2536 14 16 1.2498 3.7016 1.2596 15 8 2.2924 4.3820 0.5745 16 8 0.8626 4.0125 2.5911 17 6 -0.1953 3.8776 0.2672 18 6 -1.4433 3.6545 0.8227 19 6 -2.5786 3.7851 0.0512 20 6 -2.4674 4.1537 -1.2932 21 6 -3.6744 4.2998 -2.1224 22 8 -3.5742 4.6144 -3.2891 23 6 -5.0353 4.0585 -1.5214 24 6 -6.0880 4.8359 -2.3141 25 6 -5.3582 2.5639 -1.5741 26 6 -1.2029 4.3769 -1.8472 27 6 -0.0767 4.2376 -1.0640 28 1 -0.3634 0.5806 0.8479 29 1 -0.3633 0.4439 -0.9268 30 1 -0.3633 -1.0246 0.0789 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8205 -0.0588 -2.9564 34 1 1.6401 1.5887 2.0800 35 1 -1.5277 3.3731 1.8620 36 1 -3.5515 3.6068 0.4851 37 1 -5.0393 4.3948 -0.4846 38 1 -6.0839 4.4995 -3.3508 39 1 -7.0723 4.6610 -1.8797 40 1 -5.8579 5.9007 -2.2766 41 1 -5.3540 2.2275 -2.6108 42 1 -4.6081 2.0100 -1.0093 43 1 -6.3422 2.3892 -1.1390 44 1 -1.1086 4.6573 -2.8860 45 1 0.9006 4.4092 -1.4903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358213784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:21 Heat of formation + Delta-G solvation = -121.591422 kcal Electronic energy + Delta-G solvation = -28037.349883 eV Core-core repulsion = 24145.627618 eV Total energy + Delta-G solvation = -3891.722265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39789 -39.46467 -38.29417 -37.67949 -36.86155 -35.62328 -34.14406 -32.70503 -32.22522 -32.19743 -28.51745 -28.06475 -26.55726 -24.86374 -24.15042 -23.19311 -21.92121 -20.66968 -20.26396 -19.19869 -18.72424 -18.26528 -17.71326 -17.28892 -16.84045 -16.37961 -16.12112 -15.83892 -15.64989 -15.29472 -14.97903 -14.86514 -14.70366 -14.52246 -14.27042 -13.91735 -13.60533 -13.57688 -13.34910 -13.24993 -13.15356 -13.04053 -13.01521 -12.94978 -12.71660 -12.60031 -12.38333 -12.13436 -12.08159 -12.02434 -11.87726 -11.61904 -11.55448 -11.41059 -10.73322 -10.54346 -10.43867 -10.17981 -10.01842 -8.09543 -6.21814 -0.92908 -0.46883 0.18729 1.06404 1.42695 1.45201 1.51776 2.15813 2.45267 2.47569 2.77236 2.83989 3.17295 3.35658 3.64608 3.78850 3.82058 4.06457 4.08106 4.19482 4.26292 4.46895 4.48696 4.53767 4.62713 4.71185 4.77048 4.79882 4.87044 4.89091 4.91154 4.94224 4.96486 5.05106 5.14392 5.15276 5.30670 5.33355 5.38206 5.41683 5.63416 5.69226 5.82176 6.03725 6.29414 6.34756 6.47444 6.84768 7.46536 8.92090 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.003551 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.390209 B = 7883.224430 C = 8486.647774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.287 3.713 4 H 0.023 0.977 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.282 1.282 13 N -1.095 6.095 14 S 2.698 3.302 15 O -0.991 6.991 16 O -0.985 6.985 17 C -0.647 4.647 18 C -0.033 4.033 19 C -0.079 4.079 20 C -0.127 4.127 21 C 0.399 3.601 22 O -0.479 6.479 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.097 4.097 27 C -0.044 4.044 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.418 0.582 35 H 0.170 0.830 36 H 0.189 0.811 37 H 0.131 0.869 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.136 0.864 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.156 3.236 5.215 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.182 3.818 4 H 0.041 0.959 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.857 5.857 14 S 2.789 3.211 15 O -0.981 6.981 16 O -0.975 6.975 17 C -0.735 4.735 18 C -0.052 4.052 19 C -0.097 4.097 20 C -0.128 4.128 21 C 0.278 3.722 22 O -0.355 6.355 23 C -0.153 4.153 24 C -0.199 4.199 25 C -0.200 4.200 26 C -0.116 4.116 27 C -0.063 4.063 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.254 0.746 35 H 0.188 0.812 36 H 0.206 0.794 37 H 0.149 0.851 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.154 0.846 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.638 4.078 4.678 20.596 hybrid contribution 1.298 -0.311 -0.808 1.560 sum -18.341 3.767 3.871 19.119 Atomic orbital electron populations 1.21736 0.95994 1.01207 1.00733 1.21709 0.94677 0.97666 1.02149 1.18274 0.92879 0.91267 0.79398 0.95915 1.21835 0.93396 1.37291 1.05618 0.93071 1.25499 1.01775 0.94999 0.95469 1.69927 1.36152 1.39012 1.09740 0.85837 0.81582 0.77988 0.77623 1.19374 1.20580 1.20798 1.55246 1.83345 1.29344 1.17719 1.01398 0.73877 0.73035 0.72740 1.93557 1.54899 1.73528 1.76081 1.93513 1.84413 1.83741 1.35813 1.31111 1.19022 1.14208 1.09205 1.21278 0.89926 0.92686 1.01315 1.21967 1.00702 0.95602 0.91429 1.21086 0.94519 1.00824 0.96370 1.23198 0.91460 0.70743 0.86805 1.90517 1.89746 1.35676 1.19527 1.21732 0.90746 0.99589 1.03221 1.21737 0.98737 0.99387 0.99999 1.21801 1.04165 0.91510 1.02567 1.21579 0.91867 0.97645 1.00518 1.20962 0.99974 0.93304 0.92054 0.91964 0.94733 0.92429 0.90637 0.93403 0.92714 0.74585 0.81221 0.79421 0.85104 0.93347 0.89119 0.92942 0.93466 0.91204 0.88481 0.84605 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.85 71.98 0.71 -3.83 16 2 C -0.12 -5.07 5.37 30.59 0.16 -4.91 16 3 C 0.29 13.07 2.16 44.25 0.10 13.17 16 4 H 0.02 1.13 7.42 -2.39 -0.02 1.12 16 5 C -0.54 -28.90 8.84 25.60 0.23 -28.67 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C 0.02 1.22 5.29 84.66 0.45 1.66 16 8 N -0.91 -49.64 11.29 21.45 0.24 -49.40 16 9 Si 0.94 43.57 29.54 68.60 2.03 45.59 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 N -1.09 -40.98 4.84 -172.53 -0.83 -41.81 16 14 S 2.70 99.79 5.64 -56.49 -0.32 99.47 16 15 O -0.99 -45.70 16.93 -128.00 -2.17 -47.87 16 16 O -0.98 -35.90 17.42 -128.00 -2.23 -38.13 16 17 C -0.65 -20.29 5.71 22.35 0.13 -20.16 16 18 C -0.03 -0.76 9.50 22.23 0.21 -0.55 16 19 C -0.08 -1.44 9.35 22.58 0.21 -1.23 16 20 C -0.13 -3.00 5.87 -20.15 -0.12 -3.12 16 21 C 0.40 8.71 6.23 28.03 0.17 8.88 16 22 O -0.48 -13.91 16.09 -2.95 -0.05 -13.96 16 23 C -0.13 -1.71 2.54 -11.54 -0.03 -1.74 16 24 C -0.14 -1.81 8.72 71.98 0.63 -1.19 16 25 C -0.14 -1.54 9.17 71.98 0.66 -0.88 16 26 C -0.10 -2.88 9.60 22.58 0.22 -2.66 16 27 C -0.04 -1.46 9.16 22.23 0.20 -1.25 16 28 H 0.06 1.71 7.64 -2.39 -0.02 1.69 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 3.65 5.95 -2.39 -0.01 3.64 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 34 H 0.42 13.29 8.84 -96.75 -0.86 12.43 16 35 H 0.17 3.00 7.74 -2.91 -0.02 2.98 16 36 H 0.19 1.53 6.48 -2.91 -0.02 1.51 16 37 H 0.13 0.87 6.76 -2.39 -0.02 0.86 16 38 H 0.05 0.79 7.87 -2.39 -0.02 0.77 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.72 8.13 -2.38 -0.02 0.70 16 43 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.14 4.00 7.65 -2.91 -0.02 3.98 16 45 H 0.13 4.78 7.49 -2.91 -0.02 4.76 16 Total: -1.00 -71.52 385.52 0.75 -70.77 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.15 Total: 21.80 kcal Atomic # 6 Polarization: -50.39 SS G_CDS: 3.93 Total: -46.46 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -0.59 Total: -91.21 kcal Atomic # 8 Polarization: -95.52 SS G_CDS: -4.44 Total: -99.97 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 99.79 SS G_CDS: -0.32 Total: 99.47 kcal Total: -71.52 0.75 -70.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358213784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.817 kcal (2) G-P(sol) polarization free energy of solvation -71.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds