Wall clock time and date at job start Tue Mar 31 2020 22:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 H 1.09006 * 109.46869 * 181.28571 * 3 2 1 5 5 C 1.50698 * 109.47353 * 301.28623 * 3 2 1 6 6 H 1.08010 * 119.99672 * 114.81136 * 5 3 2 7 7 C 1.37869 * 120.00200 * 294.81318 * 5 3 2 8 8 N 1.31519 * 120.00232 * 354.27589 * 7 5 3 9 9 Si 1.86805 * 120.00201 * 174.27096 * 7 5 3 10 10 H 1.48500 * 109.47383 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47320 * 300.00438 * 9 7 5 12 12 H 1.48503 * 109.46596 * 60.00119 * 9 7 5 13 13 N 1.46501 * 109.46964 * 61.29214 * 3 2 1 14 14 S 1.65596 * 120.00270 * 95.14514 * 13 3 2 15 15 O 1.42100 * 106.40381 * 178.58269 * 14 13 3 16 16 O 1.42100 * 106.40233 * 311.50478 * 14 13 3 17 17 C 1.76198 * 107.21810 * 65.04550 * 14 13 3 18 18 C 1.38403 * 119.82569 * 269.72572 * 17 14 13 19 19 C 1.37891 * 120.17442 * 179.76571 * 18 17 14 20 20 C 1.39851 * 119.81989 * 0.52835 * 19 18 17 21 21 C 1.47174 * 120.16905 * 179.70179 * 20 19 18 22 22 O 1.21248 * 119.99801 * 180.02562 * 21 20 19 23 23 C 1.50695 * 119.99994 * 0.02562 * 21 20 19 24 24 C 1.53003 * 109.47234 * 154.99941 * 23 21 20 25 25 C 1.53002 * 109.47507 * 275.00229 * 23 21 20 26 26 C 1.39848 * 119.66190 * 359.72643 * 20 19 18 27 27 C 1.37896 * 119.82064 * 359.97438 * 26 20 19 28 28 H 1.09000 * 109.46592 * 65.11637 * 1 2 3 29 29 H 1.08997 * 109.47581 * 185.11129 * 1 2 3 30 30 H 1.08995 * 109.47040 * 305.11872 * 1 2 3 31 31 H 1.09007 * 109.47030 * 240.00012 * 2 1 3 32 32 H 1.09000 * 109.46692 * 120.00570 * 2 1 3 33 33 H 0.96997 * 119.99477 * 355.51423 * 8 7 5 34 34 H 0.97010 * 119.99633 * 275.13985 * 13 3 2 35 35 H 1.08004 * 119.91574 * 359.97438 * 18 17 14 36 36 H 1.07997 * 120.09103 * 180.22790 * 19 18 17 37 37 H 1.09009 * 109.47084 * 35.00160 * 23 21 20 38 38 H 1.08995 * 109.46768 * 60.00027 * 24 23 21 39 39 H 1.08998 * 109.47280 * 180.02562 * 24 23 21 40 40 H 1.08997 * 109.47020 * 300.00300 * 24 23 21 41 41 H 1.08998 * 109.47298 * 179.97438 * 25 23 21 42 42 H 1.09000 * 109.46950 * 299.99751 * 25 23 21 43 43 H 1.09000 * 109.47017 * 59.99808 * 25 23 21 44 44 H 1.07999 * 120.09558 * 179.97438 * 26 20 19 45 45 H 1.08005 * 119.90958 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1299 1.4424 -0.0231 5 6 1.5119 2.1620 -1.2142 6 1 0.8260 2.9880 -1.0965 7 6 1.9042 1.7660 -2.4752 8 7 2.8238 0.8364 -2.6162 9 14 1.1295 2.5497 -3.9836 10 1 1.7190 1.9535 -5.2092 11 1 -0.3353 2.3065 -3.9706 12 1 1.3887 4.0119 -3.9698 13 7 1.5773 2.1240 1.2115 14 16 2.5567 2.1990 2.5447 15 8 1.8448 2.9426 3.5242 16 8 3.0346 0.8793 2.7663 17 6 3.9605 3.1696 2.1066 18 6 5.0827 2.5569 1.5767 19 6 6.1835 3.3101 1.2269 20 6 6.1681 4.6953 1.4192 21 6 7.3412 5.5058 1.0547 22 8 7.3246 6.7063 1.2232 23 6 8.5630 4.8434 0.4720 24 6 9.3413 5.8580 -0.3682 25 6 9.4536 4.3292 1.6049 26 6 5.0323 5.3062 1.9602 27 6 3.9372 4.5399 2.2991 28 1 -0.3632 0.4324 -0.9323 29 1 -0.3634 -1.0235 0.0915 30 1 -0.3633 0.5912 0.8406 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2725 0.4758 -1.8355 34 1 0.6972 2.5314 1.2326 35 1 5.0951 1.4865 1.4336 36 1 7.0571 2.8311 0.8100 37 1 8.2577 4.0079 -0.1580 38 1 9.6465 6.6934 0.2618 39 1 10.2248 5.3788 -0.7900 40 1 8.7069 6.2243 -1.1752 41 1 10.3371 3.8497 1.1834 42 1 9.7588 5.1647 2.2348 43 1 8.8991 3.6064 2.2034 44 1 5.0130 6.3753 2.1121 45 1 3.0591 5.0104 2.7166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358213785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:24 Heat of formation + Delta-G solvation = -124.561051 kcal Electronic energy + Delta-G solvation = -27957.874495 eV Core-core repulsion = 24066.023457 eV Total energy + Delta-G solvation = -3891.851038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45142 -39.51610 -38.55179 -37.98070 -37.01058 -35.67287 -34.16649 -32.78652 -32.26807 -32.16304 -28.11904 -27.76934 -26.61154 -25.63258 -24.23632 -23.25887 -21.96336 -20.71672 -20.30036 -19.41337 -19.14419 -18.46161 -17.88552 -17.21164 -16.64546 -16.20958 -15.90645 -15.80311 -15.57502 -15.42158 -15.20128 -14.99587 -14.89411 -14.64903 -14.46019 -14.30339 -13.98769 -13.64006 -13.32129 -13.29239 -13.25394 -13.19883 -12.99883 -12.88286 -12.62107 -12.46553 -12.31333 -12.14608 -12.07856 -12.03974 -11.93136 -11.93018 -11.69312 -10.88660 -10.76379 -10.59795 -10.42487 -10.24296 -10.06862 -8.50311 -6.24330 -1.00128 -0.57514 0.11925 0.99477 1.60490 1.64530 1.83115 2.01222 2.37293 2.61937 2.70715 2.73018 3.21906 3.26063 3.54594 3.70690 3.75278 3.99184 4.02036 4.10616 4.18562 4.27151 4.40165 4.46682 4.48169 4.63018 4.71562 4.72285 4.74388 4.80143 4.84956 4.86321 4.88373 4.99076 5.07775 5.10044 5.23922 5.27087 5.28008 5.39256 5.55920 5.56758 5.61631 5.92341 6.23670 6.26934 6.40808 6.67758 7.49537 8.86452 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.004226 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.844911 B = 6624.422604 C = 8253.097824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.139 4.139 3 C 0.270 3.730 4 H 0.023 0.977 5 C -0.599 4.599 6 H 0.057 0.943 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 1.101 2.899 10 H -0.289 1.289 11 H -0.273 1.273 12 H -0.278 1.278 13 N -1.091 6.091 14 S 2.704 3.296 15 O -0.986 6.986 16 O -0.981 6.981 17 C -0.652 4.652 18 C -0.044 4.044 19 C -0.085 4.085 20 C -0.129 4.129 21 C 0.403 3.597 22 O -0.472 6.472 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.094 4.094 27 C -0.039 4.039 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.419 0.581 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.151 0.849 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.728 5.503 6.370 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.179 4.179 3 C 0.164 3.836 4 H 0.040 0.960 5 C -0.638 4.638 6 H 0.076 0.924 7 C -0.214 4.214 8 N -0.567 5.567 9 Si 0.925 3.075 10 H -0.215 1.215 11 H -0.198 1.198 12 H -0.204 1.204 13 N -0.852 5.852 14 S 2.794 3.206 15 O -0.976 6.976 16 O -0.971 6.971 17 C -0.740 4.740 18 C -0.063 4.063 19 C -0.104 4.104 20 C -0.130 4.130 21 C 0.281 3.719 22 O -0.348 6.348 23 C -0.159 4.159 24 C -0.197 4.197 25 C -0.197 4.197 26 C -0.113 4.113 27 C -0.058 4.058 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.166 0.834 36 H 0.192 0.808 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.169 0.831 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.721 5.614 5.627 12.557 hybrid contribution -0.147 0.528 1.182 1.303 sum 9.573 6.141 6.809 13.256 Atomic orbital electron populations 1.21471 0.95183 1.00028 1.01501 1.21989 0.97757 0.98377 0.99741 1.18444 0.93444 0.89318 0.82361 0.95963 1.22234 1.30729 1.18675 0.92158 0.92430 1.26727 0.95722 0.95576 1.03368 1.70899 1.24259 1.27485 1.34034 0.83101 0.75946 0.75371 0.73043 1.21518 1.19844 1.20397 1.55230 1.29216 1.70743 1.30017 1.01336 0.73311 0.73445 0.72481 1.93520 1.72323 1.73555 1.58211 1.93539 1.81944 1.36905 1.84733 1.31185 1.19032 1.08824 1.14940 1.21180 0.91668 1.01269 0.92173 1.21881 0.99294 0.92282 0.96909 1.21091 0.96290 0.95355 1.00253 1.23029 0.87825 0.87864 0.73134 1.90493 1.82725 1.17787 1.43755 1.21739 0.93636 1.00833 0.99718 1.21725 1.00521 0.98447 0.99044 1.21774 0.99814 1.01502 0.96612 1.21698 0.92118 1.01324 0.96127 1.21077 0.99371 0.91235 0.94124 0.93267 0.93392 0.92901 0.92993 0.93694 0.92534 0.74550 0.83394 0.80770 0.86490 0.92530 0.89339 0.93299 0.88792 0.92565 0.91434 0.83144 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.47 71.98 0.68 -4.12 16 2 C -0.14 -6.00 5.59 30.59 0.17 -5.83 16 3 C 0.27 11.85 2.09 44.24 0.09 11.95 16 4 H 0.02 1.04 6.63 -2.38 -0.02 1.02 16 5 C -0.60 -28.91 7.46 25.60 0.19 -28.72 16 6 H 0.06 2.74 7.82 -2.91 -0.02 2.72 16 7 C -0.01 -0.67 5.26 84.65 0.45 -0.22 16 8 N -0.93 -50.25 12.89 21.45 0.28 -49.97 16 9 Si 1.10 46.01 29.91 68.60 2.05 48.06 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 13 N -1.09 -40.61 4.80 -172.53 -0.83 -41.44 16 14 S 2.70 95.17 5.65 -56.49 -0.32 94.85 16 15 O -0.99 -36.32 17.26 -128.00 -2.21 -38.53 16 16 O -0.98 -38.58 16.52 -128.00 -2.11 -40.69 16 17 C -0.65 -21.07 5.83 22.35 0.13 -20.94 16 18 C -0.04 -1.31 8.89 22.23 0.20 -1.11 16 19 C -0.09 -2.10 9.37 22.58 0.21 -1.89 16 20 C -0.13 -3.34 5.87 -20.15 -0.12 -3.46 16 21 C 0.40 9.60 6.23 28.03 0.17 9.77 16 22 O -0.47 -13.66 16.09 -2.93 -0.05 -13.71 16 23 C -0.14 -2.34 2.55 -11.54 -0.03 -2.37 16 24 C -0.14 -2.27 8.73 71.98 0.63 -1.64 16 25 C -0.14 -1.80 9.18 71.98 0.66 -1.14 16 26 C -0.09 -2.59 9.60 22.58 0.22 -2.37 16 27 C -0.04 -1.15 9.50 22.23 0.21 -0.94 16 28 H 0.05 2.02 7.37 -2.39 -0.02 2.01 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.85 7.25 -2.39 -0.02 1.83 16 31 H 0.05 2.46 6.27 -2.38 -0.01 2.45 16 32 H 0.04 1.88 7.64 -2.39 -0.02 1.86 16 33 H 0.26 14.21 6.03 -92.71 -0.56 13.65 16 34 H 0.42 14.22 8.48 -96.74 -0.82 13.40 16 35 H 0.15 4.32 7.59 -2.91 -0.02 4.30 16 36 H 0.18 2.95 6.47 -2.91 -0.02 2.93 16 37 H 0.12 1.62 6.75 -2.38 -0.02 1.61 16 38 H 0.06 1.01 7.87 -2.39 -0.02 0.99 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.15 3.72 7.65 -2.91 -0.02 3.70 16 45 H 0.16 4.07 7.60 -2.91 -0.02 4.05 16 Total: -1.00 -65.21 380.32 1.07 -64.14 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.40 Total: 30.33 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 3.86 Total: -53.02 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -0.55 Total: -91.42 kcal Atomic # 8 Polarization: -88.57 SS G_CDS: -4.37 Total: -92.94 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.05 Total: 48.06 kcal Atomic # 16 Polarization: 95.17 SS G_CDS: -0.32 Total: 94.85 kcal Total: -65.21 1.07 -64.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358213785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.423 kcal (2) G-P(sol) polarization free energy of solvation -65.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds