Wall clock time and date at job start Tue Mar 31 2020 23:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.05725 * 2 1 4 4 C 1.54267 * 110.03164 * 238.58468 * 2 1 3 5 5 C 1.54893 * 104.19546 * 217.10547 * 4 2 1 6 6 C 1.54888 * 102.74852 * 37.94557 * 5 4 2 7 7 C 1.53873 * 110.03037 * 121.41868 * 2 1 3 8 8 O 1.42897 * 110.03500 * 238.56784 * 7 2 1 9 9 C 1.52998 * 110.07613 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47581 * 179.28295 * 9 7 2 11 11 S 1.65597 * 120.00348 * 164.99603 * 10 9 7 12 12 O 1.42099 * 106.40426 * 178.54188 * 11 10 9 13 13 O 1.42098 * 106.40198 * 311.46483 * 11 10 9 14 14 C 1.76207 * 107.21483 * 65.00251 * 11 10 9 15 15 C 1.38636 * 119.74554 * 269.73056 * 14 11 10 16 16 C 1.37617 * 120.24670 * 179.72644 * 15 14 11 17 17 C 1.40727 * 119.74295 * 0.56260 * 16 15 14 18 18 C 1.41393 * 120.24317 * 179.68523 * 17 16 15 19 19 H 1.07999 * 119.99779 * 204.40425 * 18 17 16 20 20 C 1.39943 * 119.99955 * 24.40921 * 18 17 16 21 21 N 1.30820 * 120.00108 * 17.84686 * 20 18 17 22 22 Si 1.86808 * 119.99903 * 197.84494 * 20 18 17 23 23 H 1.48503 * 109.46882 * 89.99758 * 22 20 18 24 24 H 1.48496 * 109.47237 * 209.99894 * 22 20 18 25 25 H 1.48500 * 109.47027 * 330.00237 * 22 20 18 26 26 C 1.40713 * 119.51070 * 359.70892 * 17 16 15 27 27 C 1.37617 * 119.74328 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47210 * 298.58560 * 1 2 3 29 29 H 1.09001 * 109.47020 * 58.58144 * 1 2 3 30 30 H 1.08997 * 109.46898 * 178.57878 * 1 2 3 31 31 H 1.08998 * 110.48319 * 98.43069 * 4 2 1 32 32 H 1.08994 * 110.60214 * 335.84357 * 4 2 1 33 33 H 1.08998 * 110.75809 * 279.62995 * 5 4 2 34 34 H 1.09001 * 110.75690 * 156.25971 * 5 4 2 35 35 H 1.08999 * 110.48837 * 203.37982 * 6 5 4 36 36 H 1.08992 * 110.48832 * 80.73000 * 6 5 4 37 37 H 0.96697 * 114.00354 * 181.37934 * 8 7 2 38 38 H 1.09001 * 109.46630 * 299.28718 * 9 7 2 39 39 H 1.09000 * 109.47231 * 59.27854 * 9 7 2 40 40 H 0.97002 * 119.99664 * 344.99862 * 10 9 7 41 41 H 1.07995 * 119.87953 * 359.97187 * 15 14 11 42 42 H 1.08002 * 120.12940 * 180.27593 * 16 15 14 43 43 H 0.97008 * 119.99967 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.13139 * 180.02562 * 26 17 16 45 45 H 1.08004 * 119.87656 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3137 -1.5008 -0.7192 6 6 2.8874 -1.9408 0.7034 7 6 2.0570 -0.7536 1.2337 8 8 2.8825 0.1092 2.0187 9 6 0.8868 -1.2669 2.0751 10 7 1.4029 -1.9963 3.2361 11 16 0.4015 -2.3426 4.5086 12 8 1.1803 -3.0755 5.4443 13 8 -0.2677 -1.1319 4.8336 14 6 -0.8337 -3.4496 3.9140 15 6 -2.0155 -2.9459 3.3929 16 6 -2.9848 -3.8010 2.9204 17 6 -2.7776 -5.1917 2.9786 18 6 -3.7692 -6.0800 2.5023 19 1 -3.8149 -7.0908 2.8799 20 6 -4.6911 -5.6495 1.5416 21 7 -4.4445 -4.5784 0.8322 22 14 -6.2740 -6.6043 1.2722 23 1 -7.3324 -6.0705 2.1668 24 1 -6.7032 -6.4621 -0.1422 25 1 -6.0447 -8.0392 1.5782 26 6 -1.5765 -5.6917 3.5148 27 6 -0.6189 -4.8178 3.9764 28 1 -0.3633 0.4917 0.9023 29 1 -0.3633 0.5357 -0.8770 30 1 -0.3633 -1.0273 -0.0255 31 1 2.3297 -0.0535 -2.0254 32 1 1.3152 -1.4658 -1.5989 33 1 4.1710 -0.8291 -0.6751 34 1 3.5326 -2.3679 -1.3423 35 1 3.7637 -2.1039 1.3309 36 1 2.2771 -2.8426 0.6570 37 1 3.2627 -0.3143 2.8004 38 1 0.2855 -0.4232 2.4140 39 1 0.2704 -1.9333 1.4720 40 1 2.3314 -2.2764 3.2593 41 1 -2.1745 -1.8785 3.3540 42 1 -3.9029 -3.4064 2.5108 43 1 -5.0838 -4.2797 0.1665 44 1 -1.4068 -6.7571 3.5639 45 1 0.3039 -5.1992 4.3879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392920308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:07 Heat of formation + Delta-G solvation = -130.095395 kcal Electronic energy + Delta-G solvation = -28269.943881 eV Core-core repulsion = 24377.852856 eV Total energy + Delta-G solvation = -3892.091025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.90666 -37.60866 -36.51497 -35.33582 -35.15035 -34.19532 -34.05263 -31.56793 -30.29166 -29.50154 -28.51895 -25.85344 -25.16703 -24.20313 -21.55366 -21.19265 -21.14497 -19.16231 -18.82363 -17.65376 -17.41297 -17.03582 -16.50567 -15.79657 -15.57001 -15.45267 -15.00604 -14.37495 -14.18251 -13.88637 -13.79253 -13.43392 -13.25167 -12.99040 -12.77874 -12.45107 -12.22732 -12.17659 -11.91025 -11.81635 -11.62972 -11.49544 -11.45128 -11.37306 -11.30540 -11.23774 -11.14682 -10.93748 -10.75900 -10.68274 -10.42959 -10.39573 -9.86826 -9.79951 -9.66957 -9.54539 -9.06143 -7.99922 -7.74036 -7.18366 -4.83915 1.22478 2.21607 2.85458 2.87843 2.90316 2.90874 3.63521 3.67987 4.04580 4.20008 4.36275 4.49653 4.52047 4.66685 5.03979 5.15896 5.20846 5.26323 5.34189 5.39676 5.45320 5.48240 5.66259 5.71280 5.75223 5.82734 5.90039 5.92804 6.00662 6.03917 6.09131 6.13208 6.21393 6.25443 6.36921 6.64530 6.67210 6.87053 7.01285 7.20125 7.30760 7.39110 7.59800 7.61986 7.73681 7.93379 8.28344 8.47829 8.61390 9.73006 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.003857 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.421621 B = 7257.970259 C = 8696.191513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.080 4.080 3 H 0.086 0.914 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.153 4.153 7 C 0.129 3.871 8 O -0.554 6.554 9 C 0.096 3.904 10 N -1.128 6.128 11 S 2.694 3.306 12 O -0.987 6.987 13 O -0.982 6.982 14 C -0.787 4.787 15 C -0.017 4.017 16 C -0.182 4.182 17 C 0.140 3.860 18 C -0.435 4.435 19 H 0.088 0.912 20 C 0.073 3.927 21 N -0.765 5.765 22 Si 0.917 3.083 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.239 4.239 27 C 0.003 3.997 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.374 0.626 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.405 0.595 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.289 0.711 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.840 5.159 -5.732 11.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.191 4.191 7 C 0.087 3.913 8 O -0.360 6.360 9 C -0.031 4.031 10 N -0.885 5.885 11 S 2.793 3.207 12 O -0.977 6.977 13 O -0.973 6.973 14 C -0.883 4.883 15 C -0.037 4.037 16 C -0.202 4.202 17 C 0.136 3.864 18 C -0.462 4.462 19 H 0.106 0.894 20 C -0.149 4.149 21 N -0.388 5.388 22 Si 0.740 3.260 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.182 1.182 26 C -0.260 4.260 27 C -0.018 4.018 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.222 0.778 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.237 0.763 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.510 6.187 -5.552 11.897 hybrid contribution -0.520 -1.429 -0.327 1.556 sum 7.990 4.758 -5.879 11.002 Atomic orbital electron populations 1.22074 0.93983 1.03079 1.02418 1.21654 0.96052 1.00142 0.92018 0.89607 1.22474 0.97490 0.99072 0.96786 1.22423 0.97811 0.99847 0.95731 1.23109 1.00033 0.98605 0.97355 1.22076 0.89161 0.89490 0.90611 1.86534 1.67188 1.41051 1.41213 1.22192 0.96847 0.96623 0.87399 1.55793 1.23960 1.72590 1.36140 1.01203 0.73271 0.73730 0.72478 1.93491 1.70923 1.73762 1.59559 1.93488 1.75269 1.46119 1.82376 1.29130 1.16181 1.08170 1.34865 1.20259 0.92262 0.97838 0.93371 1.21337 0.99942 0.93283 1.05670 1.17854 0.90007 0.92693 0.85848 1.19964 1.09251 0.99470 1.17551 0.89424 1.26124 0.99691 0.94974 0.94132 1.69809 1.34363 1.20178 1.14413 0.86148 0.80474 0.80869 0.78497 1.18754 1.19845 1.18188 1.21047 0.95774 0.97653 1.11495 1.20155 0.97244 0.91465 0.92898 0.91705 0.92199 0.91353 0.91460 0.90910 0.91421 0.91472 0.91112 0.89921 0.77846 0.89477 0.90070 0.76251 0.87929 0.85970 0.89974 0.88227 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 7.89 37.16 0.29 -1.49 16 2 C -0.08 -0.88 3.31 -89.50 -0.30 -1.18 16 3 H 0.09 0.98 7.95 -51.93 -0.41 0.56 16 4 C -0.12 -1.17 6.36 -25.07 -0.16 -1.33 16 5 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 6 C -0.15 -1.60 5.32 -25.07 -0.13 -1.73 16 7 C 0.13 1.51 1.05 -89.50 -0.09 1.42 16 8 O -0.55 -6.75 12.90 -35.23 -0.45 -7.21 16 9 C 0.10 1.32 4.04 -4.04 -0.02 1.30 16 10 N -1.13 -16.03 5.47 -10.62 -0.06 -16.09 16 11 S 2.69 50.39 5.73 -107.50 -0.62 49.77 16 12 O -0.99 -20.30 17.26 -57.17 -0.99 -21.28 16 13 O -0.98 -20.73 16.72 -57.17 -0.96 -21.69 16 14 C -0.79 -16.86 5.97 -39.29 -0.23 -17.09 16 15 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 16 C -0.18 -4.43 8.70 -38.87 -0.34 -4.77 16 17 C 0.14 3.46 5.58 -106.82 -0.60 2.87 16 18 C -0.44 -10.47 9.05 -37.74 -0.34 -10.81 16 19 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 20 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 21 N -0.77 -17.62 10.95 55.55 0.61 -17.01 16 22 Si 0.92 16.70 29.60 -169.99 -5.03 11.67 16 23 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 24 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 25 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 26 C -0.24 -5.54 9.80 -38.87 -0.38 -5.93 16 27 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 28 H 0.06 0.76 6.76 -51.93 -0.35 0.41 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.82 6.70 -51.93 -0.35 0.47 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 36 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 37 H 0.37 3.63 8.17 45.56 0.37 4.00 16 38 H 0.09 1.29 6.40 -51.93 -0.33 0.95 16 39 H 0.08 1.16 6.68 -51.93 -0.35 0.81 16 40 H 0.40 4.66 7.61 -34.47 -0.26 4.40 16 41 H 0.10 2.14 7.59 -52.49 -0.40 1.74 16 42 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 43 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 44 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.10 2.04 7.60 -52.48 -0.40 1.64 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -29.67 370.23 -10.92 -40.59 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -5.70 Total: 15.26 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: -3.31 Total: -39.58 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.55 Total: -33.10 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.40 Total: -50.18 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 16 Polarization: 50.39 SS G_CDS: -0.62 Total: 49.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.67 -10.92 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392920308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.505 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds