Wall clock time and date at job start Tue Mar 31 2020 23:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.05725 * 2 1 4 4 C 1.54267 * 110.03164 * 238.58468 * 2 1 3 5 5 C 1.54893 * 104.19546 * 217.10547 * 4 2 1 6 6 C 1.54888 * 102.74852 * 37.94557 * 5 4 2 7 7 C 1.53873 * 110.03037 * 121.41868 * 2 1 3 8 8 O 1.42897 * 110.03500 * 238.56784 * 7 2 1 9 9 C 1.52998 * 110.07613 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47581 * 179.28295 * 9 7 2 11 11 S 1.65597 * 120.00348 * 164.99603 * 10 9 7 12 12 O 1.42099 * 106.40426 * 178.54188 * 11 10 9 13 13 O 1.42098 * 106.40198 * 311.46483 * 11 10 9 14 14 C 1.76207 * 107.21483 * 65.00251 * 11 10 9 15 15 C 1.38636 * 119.74554 * 269.73056 * 14 11 10 16 16 C 1.37617 * 120.24670 * 179.72644 * 15 14 11 17 17 C 1.40727 * 119.74295 * 0.56260 * 16 15 14 18 18 C 1.41393 * 120.24317 * 179.68523 * 17 16 15 19 19 H 1.07999 * 119.99779 * 204.40425 * 18 17 16 20 20 C 1.39943 * 119.99955 * 24.40921 * 18 17 16 21 21 N 1.30820 * 120.00108 * 17.84686 * 20 18 17 22 22 Si 1.86808 * 119.99903 * 197.84494 * 20 18 17 23 23 H 1.48503 * 109.46882 * 89.99758 * 22 20 18 24 24 H 1.48496 * 109.47237 * 209.99894 * 22 20 18 25 25 H 1.48500 * 109.47027 * 330.00237 * 22 20 18 26 26 C 1.40713 * 119.51070 * 359.70892 * 17 16 15 27 27 C 1.37617 * 119.74328 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47210 * 298.58560 * 1 2 3 29 29 H 1.09001 * 109.47020 * 58.58144 * 1 2 3 30 30 H 1.08997 * 109.46898 * 178.57878 * 1 2 3 31 31 H 1.08998 * 110.48319 * 98.43069 * 4 2 1 32 32 H 1.08994 * 110.60214 * 335.84357 * 4 2 1 33 33 H 1.08998 * 110.75809 * 279.62995 * 5 4 2 34 34 H 1.09001 * 110.75690 * 156.25971 * 5 4 2 35 35 H 1.08999 * 110.48837 * 203.37982 * 6 5 4 36 36 H 1.08992 * 110.48832 * 80.73000 * 6 5 4 37 37 H 0.96697 * 114.00354 * 181.37934 * 8 7 2 38 38 H 1.09001 * 109.46630 * 299.28718 * 9 7 2 39 39 H 1.09000 * 109.47231 * 59.27854 * 9 7 2 40 40 H 0.97002 * 119.99664 * 344.99862 * 10 9 7 41 41 H 1.07995 * 119.87953 * 359.97187 * 15 14 11 42 42 H 1.08002 * 120.12940 * 180.27593 * 16 15 14 43 43 H 0.97008 * 119.99967 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.13139 * 180.02562 * 26 17 16 45 45 H 1.08004 * 119.87656 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3137 -1.5008 -0.7192 6 6 2.8874 -1.9408 0.7034 7 6 2.0570 -0.7536 1.2337 8 8 2.8825 0.1092 2.0187 9 6 0.8868 -1.2669 2.0751 10 7 1.4029 -1.9963 3.2361 11 16 0.4015 -2.3426 4.5086 12 8 1.1803 -3.0755 5.4443 13 8 -0.2677 -1.1319 4.8336 14 6 -0.8337 -3.4496 3.9140 15 6 -2.0155 -2.9459 3.3929 16 6 -2.9848 -3.8010 2.9204 17 6 -2.7776 -5.1917 2.9786 18 6 -3.7692 -6.0800 2.5023 19 1 -3.8149 -7.0908 2.8799 20 6 -4.6911 -5.6495 1.5416 21 7 -4.4445 -4.5784 0.8322 22 14 -6.2740 -6.6043 1.2722 23 1 -7.3324 -6.0705 2.1668 24 1 -6.7032 -6.4621 -0.1422 25 1 -6.0447 -8.0392 1.5782 26 6 -1.5765 -5.6917 3.5148 27 6 -0.6189 -4.8178 3.9764 28 1 -0.3633 0.4917 0.9023 29 1 -0.3633 0.5357 -0.8770 30 1 -0.3633 -1.0273 -0.0255 31 1 2.3297 -0.0535 -2.0254 32 1 1.3152 -1.4658 -1.5989 33 1 4.1710 -0.8291 -0.6751 34 1 3.5326 -2.3679 -1.3423 35 1 3.7637 -2.1039 1.3309 36 1 2.2771 -2.8426 0.6570 37 1 3.2627 -0.3143 2.8004 38 1 0.2855 -0.4232 2.4140 39 1 0.2704 -1.9333 1.4720 40 1 2.3314 -2.2764 3.2593 41 1 -2.1745 -1.8785 3.3540 42 1 -3.9029 -3.4064 2.5108 43 1 -5.0838 -4.2797 0.1665 44 1 -1.4068 -6.7571 3.5639 45 1 0.3039 -5.1992 4.3879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392920308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:06 Heat of formation + Delta-G solvation = -150.460345 kcal Electronic energy + Delta-G solvation = -28270.826971 eV Core-core repulsion = 24377.852856 eV Total energy + Delta-G solvation = -3892.974116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.83402 -39.38180 -38.15040 -36.80474 -36.26108 -35.81113 -35.33411 -32.43159 -32.06518 -31.29189 -29.49705 -27.62084 -26.08748 -25.20342 -23.30267 -22.95190 -22.00446 -20.43814 -19.96664 -19.42238 -18.72648 -18.43161 -17.89757 -17.21888 -16.83532 -16.52432 -16.23991 -15.84026 -15.61369 -15.18062 -14.99365 -14.90396 -14.65146 -14.11527 -13.97594 -13.91034 -13.74588 -13.57558 -13.18473 -13.14814 -13.05041 -12.93446 -12.92126 -12.89682 -12.78507 -12.59559 -12.31889 -11.98600 -11.91536 -11.60517 -11.54898 -11.47027 -11.37130 -11.30757 -11.23412 -10.82535 -10.38288 -9.79308 -9.55091 -8.87611 -6.65126 -0.32222 0.48020 1.05906 1.36004 1.43454 1.50422 2.11315 2.21989 2.51877 2.91601 3.18228 3.46423 3.51376 3.58355 3.66098 3.77511 4.23803 4.27437 4.30522 4.33048 4.39168 4.43935 4.50771 4.56253 4.62907 4.80188 4.86387 4.88891 4.94540 4.97463 5.01754 5.05139 5.10816 5.21043 5.23962 5.26578 5.30595 5.36848 5.52221 5.52524 5.59433 5.76123 5.93015 6.10164 6.15828 6.49012 6.68323 6.78763 6.80839 8.07281 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.003857 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.421621 B = 7257.970259 C = 8696.191513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.081 4.081 3 H 0.085 0.915 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.155 4.155 7 C 0.132 3.868 8 O -0.563 6.563 9 C 0.093 3.907 10 N -1.109 6.109 11 S 2.728 3.272 12 O -1.000 7.000 13 O -1.003 7.003 14 C -0.797 4.797 15 C -0.020 4.020 16 C -0.205 4.205 17 C 0.112 3.888 18 C -0.466 4.466 19 H 0.090 0.910 20 C 0.037 3.963 21 N -0.792 5.792 22 Si 0.989 3.011 23 H -0.261 1.261 24 H -0.263 1.263 25 H -0.255 1.255 26 C -0.257 4.257 27 C -0.001 4.001 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.384 0.616 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.421 0.579 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.299 0.701 44 H 0.110 0.890 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.852 5.161 -6.513 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.100 4.100 3 H 0.103 0.897 4 C -0.157 4.157 5 C -0.155 4.155 6 C -0.192 4.192 7 C 0.090 3.910 8 O -0.370 6.370 9 C -0.033 4.033 10 N -0.870 5.870 11 S 2.823 3.177 12 O -0.990 6.990 13 O -0.993 6.993 14 C -0.890 4.890 15 C -0.040 4.040 16 C -0.226 4.226 17 C 0.109 3.891 18 C -0.493 4.493 19 H 0.108 0.892 20 C -0.183 4.183 21 N -0.415 5.415 22 Si 0.808 3.192 23 H -0.186 1.186 24 H -0.187 1.187 25 H -0.178 1.178 26 C -0.278 4.278 27 C -0.021 4.021 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.258 0.742 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.528 6.164 -6.328 12.993 hybrid contribution -0.727 -1.329 -0.067 1.516 sum 8.801 4.835 -6.395 11.905 Atomic orbital electron populations 1.22066 0.94528 1.02401 1.02606 1.21688 0.95616 1.00237 0.92433 0.89676 1.22479 0.97531 0.99196 0.96462 1.22427 0.97721 1.00281 0.95050 1.23126 1.00209 0.97509 0.98399 1.22077 0.88481 0.90109 0.90331 1.86525 1.67095 1.41560 1.41852 1.22303 0.97900 0.96029 0.87098 1.55286 1.24183 1.72147 1.35403 1.00219 0.72530 0.72550 0.72357 1.93467 1.70836 1.74087 1.60657 1.93464 1.76133 1.46691 1.83056 1.29601 1.16911 1.08922 1.33537 1.20427 0.92380 0.98233 0.92912 1.21342 1.00268 0.93724 1.07225 1.18188 0.91033 0.93141 0.86745 1.20235 1.10555 0.99780 1.18742 0.89176 1.26945 1.02312 0.95811 0.93205 1.69833 1.35643 1.21266 1.14776 0.85088 0.75979 0.79374 0.78758 1.18604 1.18684 1.17797 1.21270 0.95789 0.98586 1.12117 1.20445 0.97729 0.91584 0.92305 0.92662 0.90878 0.92481 0.90050 0.91253 0.90844 0.90487 0.89602 0.90728 0.76668 0.90507 0.90732 0.74220 0.86901 0.87130 0.89011 0.87166 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 7.89 71.98 0.57 -2.96 16 2 C -0.08 -1.68 3.31 -10.07 -0.03 -1.71 16 3 H 0.08 1.80 7.95 -2.39 -0.02 1.79 16 4 C -0.12 -2.09 6.36 31.67 0.20 -1.88 16 5 C -0.12 -1.94 6.91 31.89 0.22 -1.72 16 6 C -0.15 -2.91 5.32 31.67 0.17 -2.74 16 7 C 0.13 2.91 1.05 -10.07 -0.01 2.90 16 8 O -0.56 -12.59 12.90 -148.98 -1.92 -14.51 16 9 C 0.09 2.49 4.04 86.38 0.35 2.84 16 10 N -1.11 -29.90 5.47 -187.50 -1.03 -30.92 16 11 S 2.73 99.17 5.73 -56.49 -0.32 98.84 16 12 O -1.00 -39.46 17.26 -128.00 -2.21 -41.67 16 13 O -1.00 -41.60 16.72 -128.00 -2.14 -43.74 16 14 C -0.80 -34.01 5.97 22.46 0.13 -33.87 16 15 C -0.02 -0.90 9.49 22.22 0.21 -0.68 16 16 C -0.21 -10.34 8.70 22.73 0.20 -10.14 16 17 C 0.11 5.73 5.58 -21.29 -0.12 5.61 16 18 C -0.47 -22.97 9.05 23.46 0.21 -22.76 16 19 H 0.09 4.22 7.91 -2.91 -0.02 4.19 16 20 C 0.04 1.68 5.14 85.26 0.44 2.12 16 21 N -0.79 -37.14 10.95 21.83 0.24 -36.90 16 22 Si 0.99 33.98 29.60 68.60 2.03 36.01 16 23 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 24 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 25 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 26 C -0.26 -12.10 9.80 22.73 0.22 -11.88 16 27 C 0.00 -0.04 9.49 22.22 0.21 0.17 16 28 H 0.05 1.31 6.76 -2.39 -0.02 1.29 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.38 6.70 -2.39 -0.02 1.36 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.26 7.84 -2.39 -0.02 1.25 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.34 8.05 -2.39 -0.02 1.33 16 36 H 0.07 1.54 7.84 -2.39 -0.02 1.52 16 37 H 0.38 6.55 8.17 -74.06 -0.61 5.94 16 38 H 0.08 2.25 6.40 -2.39 -0.02 2.23 16 39 H 0.07 2.13 6.68 -2.39 -0.02 2.11 16 40 H 0.42 8.74 7.61 -96.74 -0.74 8.00 16 41 H 0.11 4.81 7.59 -2.91 -0.02 4.78 16 42 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 43 H 0.30 12.41 8.30 -92.70 -0.77 11.64 16 44 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 45 H 0.13 4.80 7.60 -2.91 -0.02 4.77 16 Total: -1.00 -63.20 370.23 -2.70 -65.89 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -0.32 Total: 43.69 kcal Atomic # 6 Polarization: -79.66 SS G_CDS: 2.97 Total: -76.69 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -0.79 Total: -67.82 kcal Atomic # 8 Polarization: -93.66 SS G_CDS: -6.27 Total: -99.93 kcal Atomic # 14 Polarization: 33.98 SS G_CDS: 2.03 Total: 36.01 kcal Atomic # 16 Polarization: 99.17 SS G_CDS: -0.32 Total: 98.84 kcal Total: -63.20 -2.70 -65.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392920308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.568 kcal (2) G-P(sol) polarization free energy of solvation -63.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds