Wall clock time and date at job start Tue Mar 31 2020 23:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.05578 * 2 1 4 4 C 1.54274 * 110.03185 * 238.58673 * 2 1 3 5 5 C 1.54887 * 104.19382 * 264.32650 * 4 2 1 6 6 C 1.54890 * 102.75028 * 322.05811 * 5 4 2 7 7 C 1.53873 * 110.03324 * 121.42109 * 2 1 3 8 8 O 1.42901 * 110.06901 * 359.97438 * 7 2 1 9 9 C 1.52999 * 110.03186 * 238.56823 * 7 2 1 10 10 N 1.46503 * 109.46906 * 186.37557 * 9 7 2 11 11 S 1.65597 * 119.99660 * 164.99557 * 10 9 7 12 12 O 1.42102 * 106.40216 * 178.54229 * 11 10 9 13 13 O 1.42093 * 106.40723 * 311.46502 * 11 10 9 14 14 C 1.76206 * 107.21609 * 65.00582 * 11 10 9 15 15 C 1.38634 * 119.74836 * 269.72519 * 14 11 10 16 16 C 1.37620 * 120.24608 * 179.76447 * 15 14 11 17 17 C 1.40709 * 119.74391 * 0.48632 * 16 15 14 18 18 C 1.41399 * 120.24272 * 179.79291 * 17 16 15 19 19 H 1.07997 * 120.00065 * 204.37063 * 18 17 16 20 20 C 1.39945 * 120.00331 * 24.36537 * 18 17 16 21 21 N 1.30823 * 119.99651 * 17.87517 * 20 18 17 22 22 Si 1.86797 * 120.00419 * 197.88493 * 20 18 17 23 23 H 1.48506 * 109.46936 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47561 * 119.99499 * 22 20 18 25 25 H 1.48501 * 109.46935 * 239.99918 * 22 20 18 26 26 C 1.40709 * 119.51345 * 359.76390 * 17 16 15 27 27 C 1.37616 * 119.74714 * 0.02562 * 26 17 16 28 28 H 1.08996 * 109.47302 * 298.58325 * 1 2 3 29 29 H 1.09010 * 109.46855 * 58.58061 * 1 2 3 30 30 H 1.09003 * 109.47217 * 178.57814 * 1 2 3 31 31 H 1.08999 * 110.48652 * 145.64739 * 4 2 1 32 32 H 1.09001 * 110.48344 * 23.00547 * 4 2 1 33 33 H 1.08999 * 110.75420 * 203.73909 * 5 4 2 34 34 H 1.09004 * 110.75793 * 80.37591 * 5 4 2 35 35 H 1.09000 * 110.48253 * 279.26354 * 6 5 4 36 36 H 1.09000 * 110.48531 * 156.62605 * 6 5 4 37 37 H 0.96707 * 113.99528 * 179.28280 * 8 7 2 38 38 H 1.09001 * 109.47109 * 66.37843 * 9 7 2 39 39 H 1.09004 * 109.46997 * 306.37957 * 9 7 2 40 40 H 0.97000 * 119.99703 * 345.00605 * 10 9 7 41 41 H 1.07997 * 119.87168 * 359.97438 * 15 14 11 42 42 H 1.08003 * 120.12592 * 180.26992 * 16 15 14 43 43 H 0.97001 * 119.99903 * 179.97438 * 21 20 18 44 44 H 1.08004 * 120.13003 * 180.02562 * 26 17 16 45 45 H 1.08001 * 119.87800 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7554 -1.2370 5 6 2.3280 -2.1901 -0.7193 6 6 2.8874 -1.9407 0.7034 7 6 2.0571 -0.7536 1.2336 8 8 0.9641 -1.2330 2.0195 9 6 2.9409 0.1702 2.0741 10 7 3.5573 -0.5977 3.1588 11 16 4.8378 0.0348 3.9971 12 8 5.1799 -0.9227 4.9897 13 8 5.7590 0.5093 3.0248 14 6 4.2475 1.4545 4.8578 15 6 4.3012 2.6992 4.2498 16 6 3.8385 3.8141 4.9107 17 6 3.3191 3.6886 6.2124 18 6 2.8450 4.8278 6.9029 19 1 2.8188 4.8327 7.9826 20 6 2.4096 5.9489 6.1874 21 7 2.1075 5.8387 4.9193 22 14 2.2602 7.6028 7.0427 23 1 2.6583 7.4615 8.4665 24 1 3.1490 8.5875 6.3752 25 1 0.8540 8.0740 6.9668 26 6 3.2745 2.4210 6.8216 27 6 3.7386 1.3192 6.1402 28 1 -0.3634 0.4916 0.9024 29 1 -0.3633 0.5358 -0.8771 30 1 -0.3634 -1.0274 -0.0255 31 1 2.9811 -0.3000 -1.5967 32 1 1.3061 -0.7695 -2.0256 33 1 3.0675 -2.6931 -1.3425 34 1 1.4030 -2.7652 -0.6754 35 1 3.9440 -1.6768 0.6569 36 1 2.7401 -2.8199 1.3307 37 1 1.2323 -1.7268 2.8065 38 1 2.3326 0.9704 2.4956 39 1 3.7202 0.5994 1.4443 40 1 3.2155 -1.4766 3.3859 41 1 4.7044 2.7937 3.2523 42 1 3.8772 4.7822 4.4335 43 1 1.8054 6.6157 4.4234 44 1 2.8774 2.3132 7.8202 45 1 3.7050 0.3452 6.6057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392920313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:12 Heat of formation + Delta-G solvation = -132.539190 kcal Electronic energy + Delta-G solvation = -28002.048298 eV Core-core repulsion = 24109.851301 eV Total energy + Delta-G solvation = -3892.196996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.84251 -37.59429 -36.53046 -35.33485 -35.16931 -34.18444 -34.04648 -31.14221 -30.27926 -29.48823 -28.58918 -26.03685 -25.83128 -23.50269 -21.54003 -21.17380 -20.94119 -19.67038 -18.84114 -17.64377 -17.43176 -16.86643 -16.16471 -16.11295 -15.54817 -15.47326 -15.03112 -14.29534 -14.16128 -13.92603 -13.48970 -13.40266 -13.23777 -13.03016 -12.65304 -12.46684 -12.44333 -12.21642 -12.05592 -11.86674 -11.72883 -11.49546 -11.39435 -11.33265 -11.31243 -11.20909 -11.09915 -10.92741 -10.68473 -10.64064 -10.43403 -10.40530 -9.92679 -9.78774 -9.67579 -9.52627 -9.08082 -7.98242 -7.72496 -7.16787 -4.82156 1.21476 2.22674 2.86307 2.88630 2.91148 2.94298 3.64960 3.66762 4.08344 4.20513 4.37254 4.48236 4.48744 4.65723 5.03501 5.11927 5.23828 5.26310 5.32611 5.37230 5.49294 5.50646 5.56040 5.72640 5.78203 5.86779 5.87524 5.92806 6.02991 6.05573 6.09888 6.12527 6.21523 6.24475 6.44711 6.65887 6.68499 6.88041 7.02811 7.18601 7.32199 7.40655 7.60992 7.63339 7.75280 7.94854 8.29903 8.49409 8.62958 9.74588 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.003481 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.841735 B = 8042.315367 C = 9415.063501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 H 0.083 0.917 4 C -0.122 4.122 5 C -0.120 4.120 6 C -0.150 4.150 7 C 0.130 3.870 8 O -0.547 6.547 9 C 0.098 3.902 10 N -1.126 6.126 11 S 2.695 3.305 12 O -0.986 6.986 13 O -0.984 6.984 14 C -0.787 4.787 15 C -0.017 4.017 16 C -0.182 4.182 17 C 0.139 3.861 18 C -0.434 4.434 19 H 0.088 0.912 20 C 0.072 3.928 21 N -0.765 5.765 22 Si 0.917 3.083 23 H -0.256 1.256 24 H -0.267 1.267 25 H -0.270 1.270 26 C -0.239 4.239 27 C 0.003 3.997 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.371 0.629 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.405 0.595 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.289 0.711 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -8.648 -9.377 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.158 4.158 6 C -0.188 4.188 7 C 0.088 3.912 8 O -0.353 6.353 9 C -0.029 4.029 10 N -0.882 5.882 11 S 2.794 3.206 12 O -0.977 6.977 13 O -0.974 6.974 14 C -0.884 4.884 15 C -0.038 4.038 16 C -0.202 4.202 17 C 0.136 3.864 18 C -0.461 4.461 19 H 0.106 0.894 20 C -0.150 4.150 21 N -0.387 5.387 22 Si 0.740 3.260 23 H -0.180 1.180 24 H -0.192 1.192 25 H -0.195 1.195 26 C -0.259 4.259 27 C -0.017 4.017 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.219 0.781 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.237 0.763 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.734 -8.413 -10.149 13.463 hybrid contribution -0.486 0.676 1.133 1.407 sum -3.220 -7.736 -9.015 12.308 Atomic orbital electron populations 1.21512 0.93701 1.02023 1.01273 1.21758 0.97415 0.99128 0.92014 0.89860 1.22473 1.01024 0.95452 0.96970 1.22434 1.00738 0.96874 0.95749 1.23076 1.00454 0.98065 0.97215 1.22006 0.85824 0.92684 0.90707 1.86606 1.33011 1.75227 1.40406 1.21997 0.97358 0.94607 0.88900 1.55723 1.54842 1.29071 1.48591 1.01183 0.72810 0.73907 0.72731 1.93491 1.82357 1.62042 1.59821 1.93480 1.60158 1.82210 1.61561 1.29109 1.35344 1.14410 1.09503 1.20252 0.94484 0.91809 0.97207 1.21331 1.04021 0.97749 0.97139 1.17854 0.85383 0.91626 0.91571 1.19986 1.33790 0.96977 0.95385 0.89392 1.26137 0.92412 1.01647 0.94801 1.69821 1.27170 1.32622 1.09080 0.86108 0.78977 0.80045 0.80905 1.17971 1.19203 1.19507 1.21047 1.11151 0.92796 1.00934 1.20151 0.92031 0.97597 0.91968 0.91979 0.93424 0.92374 0.91295 0.91238 0.91641 0.91369 0.90224 0.91116 0.78091 0.90342 0.89706 0.76273 0.87967 0.85983 0.90017 0.88208 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.08 37.16 0.30 -1.09 16 2 C -0.08 -0.91 3.16 -89.50 -0.28 -1.20 16 3 H 0.08 0.91 7.67 -51.93 -0.40 0.52 16 4 C -0.12 -1.12 6.37 -25.07 -0.16 -1.28 16 5 C -0.12 -1.09 6.91 -24.74 -0.17 -1.26 16 6 C -0.15 -1.52 5.45 -25.07 -0.14 -1.66 16 7 C 0.13 1.48 1.02 -89.50 -0.09 1.39 16 8 O -0.55 -6.31 11.13 -35.23 -0.39 -6.71 16 9 C 0.10 1.33 5.02 -4.04 -0.02 1.31 16 10 N -1.13 -15.75 5.51 -10.61 -0.06 -15.81 16 11 S 2.69 50.09 5.73 -107.50 -0.62 49.47 16 12 O -0.99 -20.23 17.26 -57.17 -0.99 -21.22 16 13 O -0.98 -20.43 16.72 -57.17 -0.96 -21.39 16 14 C -0.79 -17.00 5.97 -39.29 -0.23 -17.24 16 15 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 16 C -0.18 -4.49 8.70 -38.87 -0.34 -4.83 16 17 C 0.14 3.50 5.58 -106.83 -0.60 2.91 16 18 C -0.43 -10.57 9.05 -37.74 -0.34 -10.91 16 19 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 20 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 21 N -0.76 -17.91 10.95 55.55 0.61 -17.30 16 22 Si 0.92 16.87 29.60 -169.99 -5.03 11.84 16 23 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 24 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 25 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 26 C -0.24 -5.61 9.80 -38.88 -0.38 -5.99 16 27 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 28 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 29 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 36 H 0.07 0.64 8.05 -51.93 -0.42 0.23 16 37 H 0.37 3.36 7.96 45.56 0.36 3.72 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.17 7.75 -51.93 -0.40 0.76 16 40 H 0.40 4.53 7.45 -34.47 -0.26 4.27 16 41 H 0.10 2.15 7.59 -52.49 -0.40 1.75 16 42 H 0.12 3.05 6.16 -52.48 -0.32 2.73 16 43 H 0.29 6.03 8.30 -40.82 -0.34 5.70 16 44 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 45 H 0.10 2.06 7.60 -52.49 -0.40 1.66 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -29.87 374.08 -11.04 -40.91 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -5.95 Total: 13.94 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: -3.29 Total: -39.38 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.55 Total: -33.11 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -2.33 Total: -49.32 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 16 Polarization: 50.09 SS G_CDS: -0.62 Total: 49.47 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.87 -11.04 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392920313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.627 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds