Wall clock time and date at job start Tue Mar 31 2020 23:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.01968 * 2 1 4 4 C 1.54270 * 110.03246 * 121.39524 * 2 1 3 5 5 C 1.54888 * 104.19572 * 142.89268 * 4 2 1 6 6 C 1.54884 * 102.75211 * 322.05804 * 5 4 2 7 7 C 1.53883 * 110.03224 * 238.55974 * 2 1 3 8 8 O 1.42900 * 110.03092 * 121.43102 * 7 2 1 9 9 C 1.53000 * 110.03116 * 359.97438 * 7 2 1 10 10 N 1.46491 * 109.47039 * 185.00146 * 9 7 2 11 11 S 1.65606 * 120.00119 * 165.00294 * 10 9 7 12 12 O 1.42098 * 106.40215 * 178.53889 * 11 10 9 13 13 O 1.42102 * 106.39867 * 311.45823 * 11 10 9 14 14 C 1.76196 * 107.21893 * 64.99489 * 11 10 9 15 15 C 1.38636 * 119.75191 * 269.73522 * 14 11 10 16 16 C 1.37624 * 120.24564 * 179.72201 * 15 14 11 17 17 C 1.40709 * 119.74570 * 0.56576 * 16 15 14 18 18 C 1.41401 * 120.24519 * 179.68310 * 17 16 15 19 19 H 1.07998 * 119.99909 * 155.30980 * 18 17 16 20 20 C 1.39946 * 119.99599 * 335.30977 * 18 17 16 21 21 N 1.30824 * 120.00087 * 342.23298 * 20 18 17 22 22 Si 1.86801 * 119.99487 * 162.23306 * 20 18 17 23 23 H 1.48494 * 109.47153 * 94.66864 * 22 20 18 24 24 H 1.48507 * 109.46964 * 214.66311 * 22 20 18 25 25 H 1.48494 * 109.47359 * 334.66319 * 22 20 18 26 26 C 1.40720 * 119.51216 * 359.70620 * 17 16 15 27 27 C 1.37620 * 119.74442 * 359.97438 * 26 17 16 28 28 H 1.09003 * 109.47187 * 300.06340 * 1 2 3 29 29 H 1.09000 * 109.47380 * 60.06084 * 1 2 3 30 30 H 1.09002 * 109.47275 * 180.02562 * 1 2 3 31 31 H 1.09007 * 110.48239 * 261.57114 * 4 2 1 32 32 H 1.08994 * 110.48884 * 24.21067 * 4 2 1 33 33 H 1.09008 * 110.75686 * 80.37383 * 5 4 2 34 34 H 1.08998 * 110.75484 * 203.74005 * 5 4 2 35 35 H 1.09000 * 110.48404 * 279.27022 * 6 5 4 36 36 H 1.08998 * 110.60389 * 156.68020 * 6 5 4 37 37 H 0.96701 * 113.99293 * 179.97438 * 8 7 2 38 38 H 1.09008 * 109.47083 * 305.00244 * 9 7 2 39 39 H 1.09003 * 109.47124 * 64.99710 * 9 7 2 40 40 H 0.97003 * 120.00254 * 345.00052 * 10 9 7 41 41 H 1.08001 * 119.87411 * 359.96951 * 15 14 11 42 42 H 1.07997 * 120.12397 * 180.27383 * 16 15 14 43 43 H 0.97004 * 119.99468 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.12850 * 179.97438 * 26 17 16 45 45 H 1.08001 * 119.87553 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7550 1.2372 5 6 3.3136 -1.5005 0.7197 6 6 2.8874 -1.9410 -0.7027 7 6 2.0571 -0.7541 -1.2335 8 8 2.8825 0.1085 -2.0187 9 6 0.8861 -1.2683 -2.0733 10 7 1.3980 -2.0842 -3.1770 11 16 0.3710 -3.0690 -4.0245 12 8 1.1535 -3.6902 -5.0350 13 8 -0.3728 -3.7991 -3.0586 14 6 -0.7813 -2.0280 -4.8569 15 6 -1.9687 -1.6785 -4.2324 16 6 -2.8734 -0.8613 -4.8710 17 6 -2.5948 -0.3900 -6.1672 18 6 -3.5200 0.4446 -6.8357 19 1 -3.1800 1.1153 -7.6109 20 6 -4.8760 0.4016 -6.4926 21 7 -5.3503 -0.6199 -5.8270 22 14 -6.0088 1.8029 -6.9852 23 1 -6.6798 1.4696 -8.2673 24 1 -7.0328 2.0063 -5.9290 25 1 -5.2147 3.0466 -7.1508 26 6 -1.3890 -0.7559 -6.7936 27 6 -0.4959 -1.5687 -6.1335 28 1 -0.3634 0.5148 0.8894 29 1 -0.3634 0.5129 -0.8905 30 1 -0.3634 -1.0277 0.0005 31 1 2.3297 -0.0528 2.0255 32 1 1.3142 -1.4653 1.5973 33 1 4.1710 -0.8288 0.6755 34 1 3.5324 -2.3674 1.3432 35 1 2.2770 -2.8428 -0.6559 36 1 3.7624 -2.1059 -1.3315 37 1 3.2460 -0.3095 -2.8114 38 1 0.2289 -1.8734 -1.4486 39 1 0.3281 -0.4225 -2.4750 40 1 2.3386 -2.0477 -3.4116 41 1 -2.1826 -2.0457 -3.2395 42 1 -3.7958 -0.5868 -4.3809 43 1 -6.2902 -0.6494 -5.5889 44 1 -1.1653 -0.4002 -7.7884 45 1 0.4303 -1.8504 -6.6121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392920315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:15 Heat of formation + Delta-G solvation = -150.149141 kcal Electronic energy + Delta-G solvation = -28107.121850 eV Core-core repulsion = 24214.161229 eV Total energy + Delta-G solvation = -3892.960621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.83024 -39.38314 -38.15445 -36.80537 -36.26754 -35.81434 -35.33035 -32.42183 -32.07105 -31.29777 -29.47768 -27.62770 -26.07202 -25.19326 -23.31051 -22.95940 -21.93884 -20.51219 -19.95447 -19.42962 -18.76208 -18.47475 -17.82212 -17.22930 -16.92700 -16.47485 -16.12396 -15.85416 -15.56950 -15.19762 -15.08111 -14.89953 -14.65353 -14.13526 -13.99248 -13.88889 -13.65712 -13.55041 -13.21752 -13.11616 -13.02940 -12.99546 -12.94473 -12.87410 -12.79762 -12.56730 -12.30991 -12.03131 -11.90663 -11.59792 -11.55402 -11.46267 -11.40255 -11.21541 -11.19854 -10.88665 -10.36406 -9.79268 -9.55360 -8.87909 -6.65611 -0.33080 0.48116 1.05254 1.35369 1.41425 1.52460 2.10741 2.22092 2.52318 2.91240 3.18152 3.46537 3.51582 3.61285 3.67227 3.76240 4.22711 4.29708 4.30790 4.35498 4.38021 4.42845 4.49392 4.56889 4.64694 4.82131 4.86269 4.90132 4.94417 4.98475 5.02898 5.06247 5.10337 5.22262 5.23657 5.28173 5.32659 5.37764 5.51925 5.53227 5.59084 5.75316 5.92473 6.09957 6.15592 6.48547 6.67840 6.80545 6.80570 8.07423 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.003389 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.970313 B = 8260.691976 C = 9298.476530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.153 4.153 7 C 0.132 3.868 8 O -0.563 6.563 9 C 0.091 3.909 10 N -1.107 6.107 11 S 2.729 3.271 12 O -1.001 7.001 13 O -1.002 7.002 14 C -0.798 4.798 15 C -0.019 4.019 16 C -0.206 4.206 17 C 0.112 3.888 18 C -0.467 4.467 19 H 0.091 0.909 20 C 0.034 3.966 21 N -0.798 5.798 22 Si 0.991 3.009 23 H -0.260 1.260 24 H -0.262 1.262 25 H -0.254 1.254 26 C -0.258 4.258 27 C -0.002 4.002 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.384 0.616 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.421 0.579 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.298 0.702 44 H 0.110 0.890 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.119 2.523 11.607 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.101 4.101 3 H 0.100 0.900 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.191 4.191 7 C 0.090 3.910 8 O -0.371 6.371 9 C -0.035 4.035 10 N -0.868 5.868 11 S 2.824 3.176 12 O -0.992 6.992 13 O -0.992 6.992 14 C -0.891 4.891 15 C -0.039 4.039 16 C -0.227 4.227 17 C 0.108 3.892 18 C -0.494 4.494 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.421 5.421 22 Si 0.811 3.189 23 H -0.184 1.184 24 H -0.186 1.186 25 H -0.177 1.177 26 C -0.278 4.278 27 C -0.022 4.022 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.257 0.743 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.607 1.880 12.220 16.290 hybrid contribution -0.641 0.611 -1.328 1.597 sum 9.966 2.491 10.892 14.972 Atomic orbital electron populations 1.22088 0.94411 1.02587 1.02618 1.21703 0.95760 1.00148 0.92531 0.90025 1.22484 0.97530 0.99215 0.96327 1.22442 0.97785 1.00336 0.95048 1.23099 1.00156 0.97507 0.98320 1.22088 0.88477 0.90042 0.90422 1.86561 1.67680 1.42102 1.40749 1.22349 0.98022 0.95065 0.88097 1.55255 1.22281 1.62807 1.46506 1.00185 0.72417 0.72933 0.72019 1.93466 1.70770 1.75161 1.59787 1.93461 1.73160 1.70299 1.62241 1.29639 1.16004 1.33218 1.10205 1.20447 0.92027 0.93648 0.97813 1.21349 1.00513 1.04791 0.96008 1.18202 0.91715 0.88024 0.91233 1.20232 0.92670 1.18889 1.17581 0.89050 1.27024 1.00530 0.98360 0.92579 1.69862 1.17391 1.27721 1.27117 0.85042 0.77058 0.77644 0.79205 1.18423 1.18647 1.17723 1.21263 0.98549 1.07419 1.00604 1.20456 0.97396 0.92202 0.92105 0.90785 0.93005 0.91849 0.90128 0.90696 0.91096 0.90270 0.90764 0.89921 0.76628 0.89295 0.91481 0.74301 0.86660 0.87178 0.89038 0.87178 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 7.88 71.98 0.57 -2.64 16 2 C -0.08 -1.59 3.31 -10.07 -0.03 -1.62 16 3 H 0.08 1.68 7.96 -2.38 -0.02 1.66 16 4 C -0.12 -1.81 6.36 31.67 0.20 -1.61 16 5 C -0.12 -1.77 6.91 31.88 0.22 -1.55 16 6 C -0.15 -2.70 5.52 31.67 0.17 -2.52 16 7 C 0.13 2.74 1.05 -10.07 -0.01 2.72 16 8 O -0.56 -12.06 12.91 -148.98 -1.92 -13.98 16 9 C 0.09 2.29 4.06 86.38 0.35 2.64 16 10 N -1.11 -28.75 5.53 -187.50 -1.04 -29.79 16 11 S 2.73 98.44 5.73 -56.49 -0.32 98.11 16 12 O -1.00 -39.72 17.26 -128.00 -2.21 -41.93 16 13 O -1.00 -40.72 16.72 -128.00 -2.14 -42.86 16 14 C -0.80 -34.35 5.97 22.46 0.13 -34.21 16 15 C -0.02 -0.89 9.49 22.22 0.21 -0.68 16 16 C -0.21 -10.53 8.70 22.73 0.20 -10.33 16 17 C 0.11 5.79 5.57 -21.29 -0.12 5.68 16 18 C -0.47 -23.37 9.05 23.46 0.21 -23.15 16 19 H 0.09 4.31 7.91 -2.91 -0.02 4.29 16 20 C 0.03 1.60 5.14 85.26 0.44 2.04 16 21 N -0.80 -38.87 10.97 21.83 0.24 -38.63 16 22 Si 0.99 34.53 29.59 68.60 2.03 36.56 16 23 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 24 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 25 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 26 C -0.26 -12.35 9.80 22.73 0.22 -12.13 16 27 C 0.00 -0.08 9.49 22.22 0.21 0.13 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.18 6.97 -2.39 -0.02 1.16 16 30 H 0.06 1.28 6.52 -2.39 -0.02 1.26 16 31 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.07 1.10 7.85 -2.39 -0.02 1.09 16 33 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.42 7.85 -2.39 -0.02 1.40 16 36 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 37 H 0.38 6.05 7.87 -74.06 -0.58 5.46 16 38 H 0.09 2.30 6.00 -2.38 -0.01 2.28 16 39 H 0.07 1.88 7.08 -2.39 -0.02 1.86 16 40 H 0.42 8.30 7.41 -96.74 -0.72 7.58 16 41 H 0.12 4.88 7.59 -2.91 -0.02 4.86 16 42 H 0.11 5.75 6.18 -2.91 -0.02 5.73 16 43 H 0.30 12.91 8.30 -92.71 -0.77 12.14 16 44 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 45 H 0.13 4.87 7.60 -2.91 -0.02 4.85 16 Total: -1.00 -65.09 370.10 -2.66 -67.75 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.27 Total: 42.02 kcal Atomic # 6 Polarization: -80.22 SS G_CDS: 2.98 Total: -77.24 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -0.80 Total: -68.42 kcal Atomic # 8 Polarization: -92.50 SS G_CDS: -6.27 Total: -98.77 kcal Atomic # 14 Polarization: 34.53 SS G_CDS: 2.03 Total: 36.56 kcal Atomic # 16 Polarization: 98.44 SS G_CDS: -0.32 Total: 98.11 kcal Total: -65.09 -2.66 -67.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392920315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.403 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds