Wall clock time and date at job start Tue Mar 31 2020 23:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.05498 * 2 1 4 4 C 1.54267 * 110.03587 * 121.42052 * 2 1 3 5 5 C 1.54889 * 104.19376 * 95.67473 * 4 2 1 6 6 C 1.54886 * 102.75304 * 37.94377 * 5 4 2 7 7 C 1.53882 * 110.02787 * 238.58745 * 2 1 3 8 8 O 1.42900 * 110.03479 * 0.04698 * 7 2 1 9 9 C 1.53006 * 110.02821 * 121.43065 * 7 2 1 10 10 N 1.46501 * 109.46609 * 180.02562 * 9 7 2 11 11 S 1.65597 * 119.99991 * 165.00115 * 10 9 7 12 12 O 1.42103 * 106.40397 * 178.53451 * 11 10 9 13 13 O 1.42104 * 106.39970 * 311.45280 * 11 10 9 14 14 C 1.76199 * 107.22024 * 64.99343 * 11 10 9 15 15 C 1.38634 * 119.74947 * 269.72488 * 14 11 10 16 16 C 1.37625 * 120.24757 * 179.75930 * 15 14 11 17 17 C 1.40710 * 119.74433 * 0.53967 * 16 15 14 18 18 C 1.41394 * 120.24514 * 179.74383 * 17 16 15 19 19 H 1.07998 * 120.00055 * 204.37436 * 18 17 16 20 20 C 1.39942 * 119.99832 * 24.37231 * 18 17 16 21 21 N 1.30821 * 120.00212 * 17.87133 * 20 18 17 22 22 Si 1.86808 * 119.99892 * 197.87087 * 20 18 17 23 23 H 1.48498 * 109.47106 * 59.99727 * 22 20 18 24 24 H 1.48499 * 109.47013 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46979 * 299.99930 * 22 20 18 26 26 C 1.40723 * 119.51013 * 359.71729 * 17 16 15 27 27 C 1.37612 * 119.74444 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.46702 * 300.03146 * 1 2 3 29 29 H 1.08999 * 109.47515 * 60.03700 * 1 2 3 30 30 H 1.09004 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08998 * 110.48337 * 214.35143 * 4 2 1 32 32 H 1.08995 * 110.48310 * 336.99817 * 4 2 1 33 33 H 1.09003 * 110.75355 * 156.25532 * 5 4 2 34 34 H 1.09003 * 110.75469 * 279.62641 * 5 4 2 35 35 H 1.08996 * 110.48881 * 203.38348 * 6 5 4 36 36 H 1.08998 * 110.60299 * 80.78654 * 6 5 4 37 37 H 0.96694 * 113.99623 * 179.97438 * 8 7 2 38 38 H 1.09000 * 109.46876 * 299.99026 * 9 7 2 39 39 H 1.08998 * 109.47483 * 60.00216 * 9 7 2 40 40 H 0.97005 * 120.00297 * 344.99090 * 10 9 7 41 41 H 1.08004 * 119.87516 * 0.02562 * 15 14 11 42 42 H 1.08006 * 120.12548 * 180.27826 * 16 15 14 43 43 H 0.96998 * 120.00150 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.12245 * 180.02562 * 26 17 16 45 45 H 1.08007 * 119.87504 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 1.2368 5 6 2.3282 -2.1902 0.7189 6 6 2.8875 -1.9406 -0.7037 7 6 2.0570 -0.7535 -1.2339 8 8 0.9633 -1.2320 -2.0194 9 6 2.9408 0.1705 -2.0742 10 7 3.4349 -0.5585 -3.2450 11 16 4.1001 0.2692 -4.5157 12 8 4.5075 -0.7089 -5.4626 13 8 3.1974 1.3221 -4.8253 14 6 5.5735 1.0345 -3.9257 15 6 5.5188 2.3136 -3.3938 16 6 6.6625 2.9192 -2.9254 17 6 7.8924 2.2395 -2.9984 18 6 9.0748 2.8537 -2.5254 19 1 10.0350 2.5462 -2.9122 20 6 9.0007 3.8602 -1.5559 21 7 7.9162 3.9978 -0.8373 22 14 10.4505 5.0073 -1.2877 23 1 10.7401 5.7414 -2.5456 24 1 10.1220 5.9772 -0.2123 25 1 11.6422 4.2147 -0.8917 26 6 7.9367 0.9436 -3.5453 27 6 6.7797 0.3555 -4.0026 28 1 -0.3633 0.5143 0.8897 29 1 -0.3634 0.5132 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 2.9812 -0.3001 1.5965 32 1 1.3062 -0.7697 2.0254 33 1 3.0677 -2.6931 1.3420 34 1 1.4032 -2.7652 0.6749 35 1 2.7401 -2.8196 -1.3312 36 1 3.9443 -1.6773 -0.6596 37 1 1.2309 -1.7159 -2.8126 38 1 2.3580 1.0313 -2.4021 39 1 3.7850 0.5103 -1.4744 40 1 3.3727 -1.5260 -3.2758 41 1 4.5744 2.8351 -3.3428 42 1 6.6168 3.9140 -2.5073 43 1 7.8647 4.6956 -0.1656 44 1 8.8753 0.4127 -3.6058 45 1 6.8113 -0.6391 -4.4223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392920318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:20 Heat of formation + Delta-G solvation = -132.916520 kcal Electronic energy + Delta-G solvation = -28041.103526 eV Core-core repulsion = 24148.890167 eV Total energy + Delta-G solvation = -3892.213359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.83040 -37.60898 -36.52208 -35.33530 -35.15186 -34.17634 -34.05165 -31.14451 -30.29296 -29.50181 -28.60257 -26.02198 -25.84814 -23.49577 -21.55149 -21.17554 -20.97073 -19.63724 -18.80889 -17.65420 -17.42388 -16.82853 -16.21931 -16.05499 -15.59854 -15.45612 -15.07292 -14.30000 -14.16979 -13.83725 -13.51427 -13.41088 -13.23592 -13.05226 -12.65942 -12.45954 -12.44812 -12.22401 -12.09448 -11.83550 -11.73424 -11.49052 -11.39947 -11.30699 -11.30054 -11.25316 -11.07826 -10.92722 -10.67750 -10.62714 -10.46256 -10.44634 -9.85470 -9.80974 -9.69209 -9.53317 -9.10110 -7.99937 -7.74096 -7.18217 -4.83932 1.21699 2.22123 2.85511 2.86899 2.88877 2.92597 3.63362 3.66750 4.08945 4.20013 4.37014 4.48788 4.51512 4.66449 5.04487 5.16533 5.20776 5.26228 5.31780 5.37245 5.49929 5.50666 5.70346 5.73218 5.77588 5.87110 5.88687 5.90297 6.02100 6.05254 6.08713 6.13793 6.19564 6.25242 6.42809 6.64443 6.67042 6.86838 7.01282 7.18623 7.30516 7.39067 7.59744 7.62829 7.73371 7.93292 8.28131 8.47664 8.61374 9.73147 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.003626 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.784351 B = 7719.365478 C = 9135.219932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 H 0.083 0.917 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.153 4.153 7 C 0.130 3.870 8 O -0.548 6.548 9 C 0.099 3.901 10 N -1.127 6.127 11 S 2.695 3.305 12 O -0.986 6.986 13 O -0.982 6.982 14 C -0.788 4.788 15 C -0.017 4.017 16 C -0.182 4.182 17 C 0.140 3.860 18 C -0.435 4.435 19 H 0.087 0.913 20 C 0.073 3.927 21 N -0.766 5.766 22 Si 0.917 3.083 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.261 1.261 26 C -0.239 4.239 27 C 0.003 3.997 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.372 0.628 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.406 0.594 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.290 0.710 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 -6.950 5.654 12.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.103 4.103 3 H 0.102 0.898 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.190 4.190 7 C 0.088 3.912 8 O -0.354 6.354 9 C -0.028 4.028 10 N -0.883 5.883 11 S 2.793 3.207 12 O -0.977 6.977 13 O -0.972 6.972 14 C -0.884 4.884 15 C -0.037 4.037 16 C -0.203 4.203 17 C 0.136 3.864 18 C -0.462 4.462 19 H 0.105 0.895 20 C -0.149 4.149 21 N -0.388 5.388 22 Si 0.740 3.260 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.186 1.186 26 C -0.260 4.260 27 C -0.018 4.018 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.219 0.781 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.238 0.762 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.383 -6.291 5.489 12.560 hybrid contribution 1.615 0.020 0.308 1.645 sum -7.768 -6.272 5.796 11.544 Atomic orbital electron populations 1.21511 0.93809 1.02132 1.01023 1.21761 0.97266 0.99199 0.92100 0.89845 1.22470 1.01144 0.95448 0.96878 1.22414 1.00688 0.96873 0.95691 1.23102 1.00598 0.98008 0.97338 1.22018 0.85836 0.92725 0.90659 1.86567 1.33082 1.75923 1.39827 1.21997 0.98191 0.95330 0.87305 1.55749 1.78853 1.18277 1.35449 1.01206 0.74167 0.72826 0.72465 1.93492 1.83858 1.61427 1.58927 1.93491 1.64336 1.56722 1.82684 1.29126 1.15334 1.09204 1.34725 1.20265 0.97899 0.92232 0.93349 1.21335 0.92348 1.00872 1.05704 1.17845 0.93052 0.89608 0.85884 1.19927 0.94771 1.14396 1.17150 0.89459 1.26125 0.97753 0.96878 0.94157 1.69799 1.27631 1.27364 1.13988 0.86197 0.80910 0.79603 0.79271 1.18321 1.19861 1.18551 1.21049 0.96781 0.96685 1.11466 1.20154 0.91931 0.96753 0.92927 0.93408 0.92200 0.92296 0.91125 0.91276 0.91572 0.91442 0.91142 0.89975 0.78070 0.89757 0.90381 0.76170 0.87926 0.85975 0.89904 0.88220 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.08 37.16 0.30 -1.04 16 2 C -0.08 -0.92 3.16 -89.50 -0.28 -1.20 16 3 H 0.08 0.92 7.67 -51.93 -0.40 0.53 16 4 C -0.12 -1.18 6.37 -25.07 -0.16 -1.34 16 5 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 6 C -0.15 -1.57 5.37 -25.07 -0.13 -1.71 16 7 C 0.13 1.49 1.02 -89.49 -0.09 1.39 16 8 O -0.55 -6.33 11.12 -35.23 -0.39 -6.72 16 9 C 0.10 1.34 4.99 -4.04 -0.02 1.32 16 10 N -1.13 -15.80 5.45 -10.61 -0.06 -15.86 16 11 S 2.69 50.18 5.73 -107.50 -0.62 49.57 16 12 O -0.99 -20.22 17.26 -57.17 -0.99 -21.21 16 13 O -0.98 -20.70 16.72 -57.17 -0.96 -21.65 16 14 C -0.79 -16.90 5.97 -39.29 -0.23 -17.13 16 15 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 16 C -0.18 -4.46 8.70 -38.87 -0.34 -4.80 16 17 C 0.14 3.48 5.58 -106.82 -0.60 2.88 16 18 C -0.44 -10.50 9.05 -37.74 -0.34 -10.84 16 19 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 20 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 21 N -0.77 -17.72 10.95 55.55 0.61 -17.12 16 22 Si 0.92 16.72 29.60 -169.99 -5.03 11.69 16 23 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 24 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 25 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 26 C -0.24 -5.56 9.80 -38.87 -0.38 -5.94 16 27 C 0.00 0.05 9.49 -39.66 -0.38 -0.32 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 30 H 0.06 0.63 7.81 -51.93 -0.41 0.23 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 36 H 0.08 0.91 7.83 -51.93 -0.41 0.50 16 37 H 0.37 3.47 8.12 45.56 0.37 3.84 16 38 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 39 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 40 H 0.41 4.59 7.60 -34.47 -0.26 4.33 16 41 H 0.10 2.15 7.59 -52.48 -0.40 1.75 16 42 H 0.12 3.03 6.16 -52.48 -0.32 2.70 16 43 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 44 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 45 H 0.10 2.05 7.60 -52.48 -0.40 1.65 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -29.59 374.18 -11.03 -40.62 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -5.95 Total: 14.26 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: -3.29 Total: -39.22 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.55 Total: -32.97 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -2.33 Total: -49.58 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 50.18 SS G_CDS: -0.62 Total: 49.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.59 -11.03 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392920318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.295 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds