Wall clock time and date at job start Tue Mar 31 2020 23:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.05498 * 2 1 4 4 C 1.54267 * 110.03587 * 121.42052 * 2 1 3 5 5 C 1.54889 * 104.19376 * 95.67473 * 4 2 1 6 6 C 1.54886 * 102.75304 * 37.94377 * 5 4 2 7 7 C 1.53882 * 110.02787 * 238.58745 * 2 1 3 8 8 O 1.42900 * 110.03479 * 0.04698 * 7 2 1 9 9 C 1.53006 * 110.02821 * 121.43065 * 7 2 1 10 10 N 1.46501 * 109.46609 * 180.02562 * 9 7 2 11 11 S 1.65597 * 119.99991 * 165.00115 * 10 9 7 12 12 O 1.42103 * 106.40397 * 178.53451 * 11 10 9 13 13 O 1.42104 * 106.39970 * 311.45280 * 11 10 9 14 14 C 1.76199 * 107.22024 * 64.99343 * 11 10 9 15 15 C 1.38634 * 119.74947 * 269.72488 * 14 11 10 16 16 C 1.37625 * 120.24757 * 179.75930 * 15 14 11 17 17 C 1.40710 * 119.74433 * 0.53967 * 16 15 14 18 18 C 1.41394 * 120.24514 * 179.74383 * 17 16 15 19 19 H 1.07998 * 120.00055 * 204.37436 * 18 17 16 20 20 C 1.39942 * 119.99832 * 24.37231 * 18 17 16 21 21 N 1.30821 * 120.00212 * 17.87133 * 20 18 17 22 22 Si 1.86808 * 119.99892 * 197.87087 * 20 18 17 23 23 H 1.48498 * 109.47106 * 59.99727 * 22 20 18 24 24 H 1.48499 * 109.47013 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46979 * 299.99930 * 22 20 18 26 26 C 1.40723 * 119.51013 * 359.71729 * 17 16 15 27 27 C 1.37612 * 119.74444 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.46702 * 300.03146 * 1 2 3 29 29 H 1.08999 * 109.47515 * 60.03700 * 1 2 3 30 30 H 1.09004 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08998 * 110.48337 * 214.35143 * 4 2 1 32 32 H 1.08995 * 110.48310 * 336.99817 * 4 2 1 33 33 H 1.09003 * 110.75355 * 156.25532 * 5 4 2 34 34 H 1.09003 * 110.75469 * 279.62641 * 5 4 2 35 35 H 1.08996 * 110.48881 * 203.38348 * 6 5 4 36 36 H 1.08998 * 110.60299 * 80.78654 * 6 5 4 37 37 H 0.96694 * 113.99623 * 179.97438 * 8 7 2 38 38 H 1.09000 * 109.46876 * 299.99026 * 9 7 2 39 39 H 1.08998 * 109.47483 * 60.00216 * 9 7 2 40 40 H 0.97005 * 120.00297 * 344.99090 * 10 9 7 41 41 H 1.08004 * 119.87516 * 0.02562 * 15 14 11 42 42 H 1.08006 * 120.12548 * 180.27826 * 16 15 14 43 43 H 0.96998 * 120.00150 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.12245 * 180.02562 * 26 17 16 45 45 H 1.08007 * 119.87504 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 1.2368 5 6 2.3282 -2.1902 0.7189 6 6 2.8875 -1.9406 -0.7037 7 6 2.0570 -0.7535 -1.2339 8 8 0.9633 -1.2320 -2.0194 9 6 2.9408 0.1705 -2.0742 10 7 3.4349 -0.5585 -3.2450 11 16 4.1001 0.2692 -4.5157 12 8 4.5075 -0.7089 -5.4626 13 8 3.1974 1.3221 -4.8253 14 6 5.5735 1.0345 -3.9257 15 6 5.5188 2.3136 -3.3938 16 6 6.6625 2.9192 -2.9254 17 6 7.8924 2.2395 -2.9984 18 6 9.0748 2.8537 -2.5254 19 1 10.0350 2.5462 -2.9122 20 6 9.0007 3.8602 -1.5559 21 7 7.9162 3.9978 -0.8373 22 14 10.4505 5.0073 -1.2877 23 1 10.7401 5.7414 -2.5456 24 1 10.1220 5.9772 -0.2123 25 1 11.6422 4.2147 -0.8917 26 6 7.9367 0.9436 -3.5453 27 6 6.7797 0.3555 -4.0026 28 1 -0.3633 0.5143 0.8897 29 1 -0.3634 0.5132 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 2.9812 -0.3001 1.5965 32 1 1.3062 -0.7697 2.0254 33 1 3.0677 -2.6931 1.3420 34 1 1.4032 -2.7652 0.6749 35 1 2.7401 -2.8196 -1.3312 36 1 3.9443 -1.6773 -0.6596 37 1 1.2309 -1.7159 -2.8126 38 1 2.3580 1.0313 -2.4021 39 1 3.7850 0.5103 -1.4744 40 1 3.3727 -1.5260 -3.2758 41 1 4.5744 2.8351 -3.3428 42 1 6.6168 3.9140 -2.5073 43 1 7.8647 4.6956 -0.1656 44 1 8.8753 0.4127 -3.6058 45 1 6.8113 -0.6391 -4.4223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392920318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:19 Heat of formation + Delta-G solvation = -152.763794 kcal Electronic energy + Delta-G solvation = -28041.964168 eV Core-core repulsion = 24148.890167 eV Total energy + Delta-G solvation = -3893.074001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73349 -39.38617 -38.15289 -36.80577 -36.27020 -35.81379 -35.26424 -32.07386 -31.95833 -31.29664 -29.60495 -27.62601 -26.88056 -24.47987 -23.30427 -22.95487 -21.83034 -20.68625 -20.09599 -19.42509 -18.78883 -18.38235 -17.51370 -17.22259 -16.95972 -16.47462 -16.34567 -15.84995 -15.56253 -15.15166 -14.99661 -14.84764 -14.38415 -14.10606 -13.97055 -13.90757 -13.60592 -13.52204 -13.29002 -13.22292 -13.13361 -13.03459 -12.97372 -12.89399 -12.86284 -12.58708 -12.14328 -12.01829 -11.84475 -11.56077 -11.49270 -11.48708 -11.36386 -11.31681 -11.22443 -10.78606 -10.43598 -9.79722 -9.55669 -8.87928 -6.65603 -0.32546 0.47949 1.05366 1.35642 1.44014 1.49460 2.10886 2.21543 2.51663 2.91631 3.24764 3.46802 3.50910 3.59267 3.67290 3.78343 4.24277 4.27328 4.30228 4.32175 4.40184 4.45021 4.57209 4.64653 4.68929 4.79738 4.86128 4.90425 4.94720 5.00216 5.07967 5.08641 5.10187 5.19289 5.23524 5.27656 5.35910 5.44820 5.51656 5.58993 5.59394 5.75517 5.92365 6.09564 6.15343 6.48382 6.67727 6.80378 6.82238 8.06860 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.003626 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.784351 B = 7719.365478 C = 9135.219932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.092 4.092 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.154 4.154 7 C 0.135 3.865 8 O -0.555 6.555 9 C 0.095 3.905 10 N -1.107 6.107 11 S 2.729 3.271 12 O -0.999 6.999 13 O -1.003 7.003 14 C -0.797 4.797 15 C -0.020 4.020 16 C -0.206 4.206 17 C 0.112 3.888 18 C -0.467 4.467 19 H 0.091 0.909 20 C 0.037 3.963 21 N -0.793 5.793 22 Si 0.989 3.011 23 H -0.260 1.260 24 H -0.263 1.263 25 H -0.255 1.255 26 C -0.258 4.258 27 C -0.001 4.001 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.381 0.619 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.422 0.578 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.299 0.701 44 H 0.111 0.889 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 -7.918 6.397 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.111 4.111 3 H 0.095 0.905 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.191 4.191 7 C 0.093 3.907 8 O -0.362 6.362 9 C -0.031 4.031 10 N -0.868 5.868 11 S 2.824 3.176 12 O -0.990 6.990 13 O -0.993 6.993 14 C -0.890 4.890 15 C -0.040 4.040 16 C -0.227 4.227 17 C 0.109 3.891 18 C -0.494 4.494 19 H 0.109 0.891 20 C -0.183 4.183 21 N -0.416 5.416 22 Si 0.808 3.192 23 H -0.184 1.184 24 H -0.187 1.187 25 H -0.178 1.178 26 C -0.278 4.278 27 C -0.021 4.021 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.230 0.770 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.259 0.741 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.110 0.890 44 H 0.129 0.871 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.701 -7.273 6.227 13.630 hybrid contribution 1.588 0.248 0.057 1.608 sum -8.113 -7.025 6.284 12.436 Atomic orbital electron populations 1.21459 0.93396 1.02068 1.01003 1.21841 0.97632 0.99068 0.92531 0.90548 1.22469 1.01291 0.95442 0.96571 1.22412 1.01132 0.96703 0.95064 1.23112 0.99810 0.97903 0.98312 1.21976 0.85584 0.92801 0.90345 1.86564 1.33153 1.76034 1.40414 1.22114 0.98272 0.95738 0.86999 1.55227 1.77748 1.19122 1.34698 1.00202 0.72909 0.72114 0.72338 1.93469 1.84013 1.61482 1.60040 1.93466 1.64403 1.58120 1.83361 1.29613 1.17047 1.09016 1.33345 1.20438 0.97792 0.92872 0.92924 1.21344 0.93211 1.00822 1.07283 1.18185 0.93603 0.90546 0.86797 1.20218 0.94777 1.16055 1.18336 0.89103 1.26958 1.00466 0.97645 0.93213 1.69827 1.29353 1.28048 1.14382 0.85131 0.77409 0.77439 0.79202 1.18401 1.18713 1.17840 1.21276 0.97922 0.96511 1.12076 1.20450 0.91625 0.97662 0.92330 0.92131 0.93536 0.92298 0.91506 0.90031 0.90688 0.90885 0.89665 0.90839 0.76961 0.90789 0.91109 0.74116 0.86896 0.87159 0.88991 0.87132 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.08 71.98 0.58 -1.82 16 2 C -0.09 -1.89 3.16 -10.07 -0.03 -1.92 16 3 H 0.08 1.67 7.67 -2.39 -0.02 1.65 16 4 C -0.12 -2.11 6.37 31.67 0.20 -1.91 16 5 C -0.12 -1.91 6.91 31.88 0.22 -1.69 16 6 C -0.15 -2.84 5.37 31.67 0.17 -2.67 16 7 C 0.14 2.90 1.02 -10.06 -0.01 2.89 16 8 O -0.55 -11.75 11.12 -148.98 -1.66 -13.40 16 9 C 0.10 2.52 4.99 86.38 0.43 2.95 16 10 N -1.11 -29.37 5.45 -187.48 -1.02 -30.39 16 11 S 2.73 98.61 5.73 -56.49 -0.32 98.29 16 12 O -1.00 -39.24 17.26 -128.00 -2.21 -41.45 16 13 O -1.00 -41.48 16.72 -128.00 -2.14 -43.62 16 14 C -0.80 -34.05 5.97 22.46 0.13 -33.92 16 15 C -0.02 -0.93 9.49 22.22 0.21 -0.72 16 16 C -0.21 -10.44 8.70 22.73 0.20 -10.24 16 17 C 0.11 5.74 5.58 -21.29 -0.12 5.62 16 18 C -0.47 -23.08 9.05 23.46 0.21 -22.86 16 19 H 0.09 4.24 7.91 -2.91 -0.02 4.22 16 20 C 0.04 1.68 5.14 85.26 0.44 2.12 16 21 N -0.79 -37.40 10.95 21.83 0.24 -37.16 16 22 Si 0.99 34.03 29.60 68.60 2.03 36.06 16 23 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 24 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 25 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 26 C -0.26 -12.13 9.80 22.73 0.22 -11.91 16 27 C 0.00 -0.04 9.49 22.22 0.21 0.17 16 28 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.03 7.92 -2.39 -0.02 1.01 16 30 H 0.06 1.15 7.81 -2.38 -0.02 1.13 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.23 7.84 -2.39 -0.02 1.21 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.32 8.07 -2.39 -0.02 1.30 16 36 H 0.07 1.51 7.83 -2.39 -0.02 1.49 16 37 H 0.38 6.22 8.12 -74.06 -0.60 5.62 16 38 H 0.07 2.13 7.75 -2.39 -0.02 2.11 16 39 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 40 H 0.42 8.57 7.60 -96.74 -0.74 7.84 16 41 H 0.11 4.83 7.59 -2.91 -0.02 4.81 16 42 H 0.11 5.72 6.16 -2.91 -0.02 5.70 16 43 H 0.30 12.53 8.30 -92.71 -0.77 11.76 16 44 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 45 H 0.13 4.81 7.60 -2.91 -0.02 4.78 16 Total: -1.00 -63.16 374.18 -2.33 -65.49 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.32 Total: 42.08 kcal Atomic # 6 Polarization: -78.99 SS G_CDS: 3.07 Total: -75.91 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -0.78 Total: -67.55 kcal Atomic # 8 Polarization: -92.46 SS G_CDS: -6.01 Total: -98.47 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Atomic # 16 Polarization: 98.61 SS G_CDS: -0.32 Total: 98.29 kcal Total: -63.16 -2.33 -65.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392920318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.270 kcal (2) G-P(sol) polarization free energy of solvation -63.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds