Wall clock time and date at job start Tue Mar 31 2020 23:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.51584 * 2 1 4 4 C 1.53069 * 109.62257 * 120.02783 * 2 1 3 5 5 C 1.53040 * 109.65853 * 181.17141 * 4 2 1 6 6 H 1.09003 * 109.49417 * 58.64819 * 5 4 2 7 7 C 1.52994 * 109.52568 * 178.73045 * 5 4 2 8 8 O 1.42902 * 109.47379 * 184.85198 * 7 5 4 9 9 C 1.53190 * 109.31390 * 298.70107 * 5 4 2 10 10 N 1.46924 * 108.77439 * 54.63231 * 9 5 4 11 11 S 1.65597 * 120.63159 * 126.41681 * 10 9 5 12 12 O 1.42105 * 106.40276 * 23.51659 * 11 10 9 13 13 O 1.42105 * 106.40611 * 156.43775 * 11 10 9 14 14 C 1.76199 * 107.21704 * 269.97749 * 11 10 9 15 15 C 1.38637 * 119.75065 * 269.72209 * 14 11 10 16 16 C 1.37610 * 120.24774 * 179.72279 * 15 14 11 17 17 C 1.40714 * 119.74665 * 0.53029 * 16 15 14 18 18 C 1.41401 * 120.24422 * 179.72680 * 17 16 15 19 19 H 1.07995 * 120.00242 * 24.40262 * 18 17 16 20 20 C 1.39949 * 119.99944 * 204.40015 * 18 17 16 21 21 N 1.30823 * 119.99509 * 17.84669 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 197.84825 * 20 18 17 23 23 H 1.48505 * 109.46846 * 60.00156 * 22 20 18 24 24 H 1.48494 * 109.46941 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47209 * 300.00507 * 22 20 18 26 26 C 1.40711 * 119.51213 * 359.74561 * 17 16 15 27 27 C 1.37619 * 119.74278 * 0.02562 * 26 17 16 28 28 C 1.46927 * 118.73909 * 306.39333 * 10 9 5 29 29 H 1.08999 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47201 * 300.07803 * 1 2 3 31 31 H 1.08994 * 109.46869 * 60.08021 * 1 2 3 32 32 H 1.09002 * 109.34903 * 61.14512 * 4 2 1 33 33 H 1.08999 * 109.44207 * 301.25483 * 4 2 1 34 34 H 1.08998 * 109.47424 * 304.85550 * 7 5 4 35 35 H 1.09000 * 109.47332 * 64.85641 * 7 5 4 36 36 H 0.96700 * 114.00144 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.58644 * 294.84788 * 9 5 4 38 38 H 1.08994 * 109.58635 * 174.42145 * 9 5 4 39 39 H 1.08005 * 119.87293 * 359.97438 * 15 14 11 40 40 H 1.08011 * 120.12922 * 180.28155 * 16 15 14 41 41 H 0.97002 * 119.99537 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.13314 * 180.02562 * 26 17 16 43 43 H 1.07999 * 119.87287 * 180.02562 * 27 26 17 44 44 H 1.09006 * 109.58342 * 173.39795 * 28 10 9 45 45 H 1.09002 * 109.58958 * 293.67584 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0441 -0.7215 1.2483 5 6 3.5742 -0.6965 1.2639 6 1 3.9213 0.3367 1.2509 7 6 4.0841 -1.3906 2.5285 8 8 5.5061 -1.2680 2.5988 9 6 4.1056 -1.4300 0.0285 10 7 3.5046 -0.8319 -1.1714 11 16 4.4581 -0.2906 -2.4124 12 8 5.6855 -0.9999 -2.3142 13 8 3.6449 -0.3021 -3.5778 14 6 4.8323 1.3995 -2.0836 15 6 3.9990 2.3956 -2.5686 16 6 4.2784 3.7186 -2.3130 17 6 5.4212 4.0591 -1.5659 18 6 5.7215 5.4154 -1.3020 19 1 4.9334 6.1538 -1.3066 20 6 7.0400 5.8009 -1.0347 21 7 8.0312 5.0123 -1.3622 22 14 7.3847 7.4414 -0.2104 23 1 6.7244 7.4755 1.1193 24 1 8.8499 7.6112 -0.0395 25 1 6.8535 8.5411 -1.0552 26 6 6.2630 3.0399 -1.0835 27 6 5.9614 1.7233 -1.3472 28 6 2.0414 -0.7237 -1.2496 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6979 -1.7550 1.2363 33 1 1.6636 -0.2214 2.1389 34 1 3.6353 -0.9238 3.4053 35 1 3.8115 -2.4456 2.4990 36 1 5.8988 -1.6858 3.3775 37 1 3.8358 -2.4846 0.0854 38 1 5.1900 -1.3301 -0.0175 39 1 3.1249 2.1321 -3.1457 40 1 3.6254 4.4929 -2.6880 41 1 8.9450 5.2794 -1.1767 42 1 7.1424 3.2899 -0.5086 43 1 6.6058 0.9394 -0.9777 44 1 1.7638 -0.1578 -2.1389 45 1 1.6033 -1.7206 -1.2994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398653661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:18 Heat of formation + Delta-G solvation = -127.685375 kcal Electronic energy + Delta-G solvation = -28552.738551 eV Core-core repulsion = 24660.752032 eV Total energy + Delta-G solvation = -3891.986519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.06637 -37.51960 -36.68395 -36.43437 -35.08298 -33.99469 -33.29963 -32.37203 -30.20657 -29.41685 -26.77859 -25.81155 -25.77101 -24.23236 -21.45200 -21.10210 -20.78741 -20.01201 -18.34505 -17.58219 -17.36912 -17.11778 -16.48249 -15.93029 -15.44524 -15.21850 -14.59505 -14.23790 -14.12419 -14.00603 -13.67586 -13.43232 -13.32187 -13.09489 -12.66051 -12.47445 -12.38074 -12.19691 -12.05669 -11.71808 -11.56828 -11.49326 -11.39762 -11.27525 -11.22092 -11.20124 -10.94846 -10.84193 -10.79287 -10.47095 -10.42879 -10.27472 -10.02520 -9.69922 -9.53333 -9.42961 -8.61426 -7.90240 -7.65014 -7.09590 -4.75674 1.24874 2.31264 2.89776 2.91721 2.95596 2.97882 3.63411 3.69393 4.11488 4.29171 4.56102 4.72029 4.80645 4.87521 4.95091 5.18737 5.20304 5.30239 5.37604 5.42974 5.45727 5.52768 5.62384 5.65044 5.75363 5.79080 5.85100 5.98884 6.07176 6.10147 6.15735 6.18017 6.27017 6.45873 6.49653 6.71985 6.73154 6.86677 7.05641 7.10437 7.38590 7.47126 7.60453 7.69344 7.81094 8.01356 8.36610 8.55597 8.69948 9.81936 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.003969 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.972611 B = 7052.725614 C = 7523.423496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.083 0.917 4 C -0.100 4.100 5 C -0.107 4.107 6 H 0.090 0.910 7 C 0.084 3.916 8 O -0.568 6.568 9 C 0.136 3.864 10 N -1.004 6.004 11 S 2.690 3.310 12 O -0.980 6.980 13 O -0.984 6.984 14 C -0.785 4.785 15 C 0.001 3.999 16 C -0.239 4.239 17 C 0.140 3.860 18 C -0.438 4.438 19 H 0.086 0.914 20 C 0.073 3.927 21 N -0.765 5.765 22 Si 0.917 3.083 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.262 1.262 26 C -0.183 4.183 27 C -0.012 4.012 28 C 0.129 3.871 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.376 0.624 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.289 0.711 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 -8.943 8.968 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.101 0.899 4 C -0.138 4.138 5 C -0.127 4.127 6 H 0.108 0.892 7 C 0.005 3.995 8 O -0.372 6.372 9 C 0.010 3.990 10 N -0.839 5.839 11 S 2.790 3.210 12 O -0.971 6.971 13 O -0.975 6.975 14 C -0.881 4.881 15 C -0.019 4.019 16 C -0.260 4.260 17 C 0.137 3.863 18 C -0.465 4.465 19 H 0.104 0.896 20 C -0.150 4.150 21 N -0.387 5.387 22 Si 0.740 3.260 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.186 1.186 26 C -0.203 4.203 27 C -0.032 4.032 28 C 0.004 3.996 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.223 0.777 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.820 -9.229 7.638 14.877 hybrid contribution 0.325 1.146 1.298 1.762 sum -8.496 -8.083 8.937 14.744 Atomic orbital electron populations 1.21762 0.94646 1.01713 1.02074 1.21513 0.95485 1.00940 0.94943 0.89892 1.21469 0.93820 1.00631 0.97882 1.21557 0.95519 1.01901 0.93690 0.89181 1.22163 0.81383 0.98675 0.97255 1.86579 1.20294 1.81105 1.49257 1.21276 0.98847 0.95804 0.83037 1.57999 1.15535 1.76070 1.34257 1.01391 0.72279 0.74872 0.72415 1.93481 1.43930 1.73258 1.86405 1.93465 1.69885 1.88370 1.45782 1.29209 1.10968 1.19792 1.28142 1.20128 0.95159 0.92943 0.93643 1.20999 1.02637 0.94660 1.07669 1.17837 0.89741 0.93317 0.85451 1.19887 0.93712 0.94055 1.38848 0.89573 1.26129 0.95879 0.99861 0.93096 1.69824 1.01061 1.36785 1.31065 0.86209 0.78231 0.80885 0.80672 1.18417 1.19905 1.18589 1.21325 1.02625 0.91164 1.05189 1.20247 0.92762 0.96771 0.93446 1.21370 0.79384 1.00489 0.98395 0.92715 0.92496 0.92248 0.91914 0.91783 0.93616 0.93752 0.77711 0.92032 0.88571 0.88018 0.88307 0.89921 0.86056 0.87958 0.89308 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.21 37.16 0.34 -0.99 16 2 C -0.11 -1.27 2.87 -90.48 -0.26 -1.53 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 4 C -0.10 -1.05 4.45 -26.67 -0.12 -1.16 16 5 C -0.11 -1.35 2.58 -90.50 -0.23 -1.58 16 6 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 7 C 0.08 0.86 6.43 37.15 0.24 1.10 16 8 O -0.57 -6.75 13.30 -35.23 -0.47 -7.22 16 9 C 0.14 1.97 5.50 -3.71 -0.02 1.95 16 10 N -1.00 -16.13 3.29 -113.52 -0.37 -16.50 16 11 S 2.69 54.77 5.68 -107.50 -0.61 54.16 16 12 O -0.98 -22.15 15.97 -57.17 -0.91 -23.06 16 13 O -0.98 -21.46 15.97 -57.17 -0.91 -22.38 16 14 C -0.79 -17.83 6.00 -39.29 -0.24 -18.07 16 15 C 0.00 0.03 9.49 -39.66 -0.38 -0.34 16 16 C -0.24 -5.73 9.80 -38.88 -0.38 -6.11 16 17 C 0.14 3.61 5.58 -106.82 -0.60 3.01 16 18 C -0.44 -10.88 9.06 -37.74 -0.34 -11.22 16 19 H 0.09 2.01 7.91 -52.49 -0.41 1.60 16 20 C 0.07 1.70 5.14 -17.34 -0.09 1.61 16 21 N -0.77 -18.72 10.95 55.55 0.61 -18.11 16 22 Si 0.92 17.27 29.60 -169.99 -5.03 12.24 16 23 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 26 C -0.18 -4.68 8.70 -38.87 -0.34 -5.02 16 27 C -0.01 -0.29 9.49 -39.66 -0.38 -0.66 16 28 C 0.13 1.73 5.66 -3.71 -0.02 1.71 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.38 2.59 9.12 45.56 0.42 3.01 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 1.60 6.97 -51.93 -0.36 1.23 16 39 H 0.10 2.08 7.59 -52.48 -0.40 1.68 16 40 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 41 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 42 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16 43 H 0.10 2.34 7.60 -52.49 -0.40 1.94 16 44 H 0.09 1.25 7.13 -51.93 -0.37 0.88 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -31.41 374.41 -10.93 -42.33 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.06 Total: 10.20 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: -2.81 Total: -37.29 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.23 Total: -34.62 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -2.29 Total: -52.66 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: 54.77 SS G_CDS: -0.61 Total: 54.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.41 -10.93 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398653661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.354 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds