Wall clock time and date at job start Tue Mar 31 2020 23:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.51584 * 2 1 4 4 C 1.53069 * 109.62257 * 120.02783 * 2 1 3 5 5 C 1.53040 * 109.65853 * 181.17141 * 4 2 1 6 6 H 1.09003 * 109.49417 * 58.64819 * 5 4 2 7 7 C 1.52994 * 109.52568 * 178.73045 * 5 4 2 8 8 O 1.42902 * 109.47379 * 184.85198 * 7 5 4 9 9 C 1.53190 * 109.31390 * 298.70107 * 5 4 2 10 10 N 1.46924 * 108.77439 * 54.63231 * 9 5 4 11 11 S 1.65597 * 120.63159 * 126.41681 * 10 9 5 12 12 O 1.42105 * 106.40276 * 23.51659 * 11 10 9 13 13 O 1.42105 * 106.40611 * 156.43775 * 11 10 9 14 14 C 1.76199 * 107.21704 * 269.97749 * 11 10 9 15 15 C 1.38637 * 119.75065 * 269.72209 * 14 11 10 16 16 C 1.37610 * 120.24774 * 179.72279 * 15 14 11 17 17 C 1.40714 * 119.74665 * 0.53029 * 16 15 14 18 18 C 1.41401 * 120.24422 * 179.72680 * 17 16 15 19 19 H 1.07995 * 120.00242 * 24.40262 * 18 17 16 20 20 C 1.39949 * 119.99944 * 204.40015 * 18 17 16 21 21 N 1.30823 * 119.99509 * 17.84669 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 197.84825 * 20 18 17 23 23 H 1.48505 * 109.46846 * 60.00156 * 22 20 18 24 24 H 1.48494 * 109.46941 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47209 * 300.00507 * 22 20 18 26 26 C 1.40711 * 119.51213 * 359.74561 * 17 16 15 27 27 C 1.37619 * 119.74278 * 0.02562 * 26 17 16 28 28 C 1.46927 * 118.73909 * 306.39333 * 10 9 5 29 29 H 1.08999 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47201 * 300.07803 * 1 2 3 31 31 H 1.08994 * 109.46869 * 60.08021 * 1 2 3 32 32 H 1.09002 * 109.34903 * 61.14512 * 4 2 1 33 33 H 1.08999 * 109.44207 * 301.25483 * 4 2 1 34 34 H 1.08998 * 109.47424 * 304.85550 * 7 5 4 35 35 H 1.09000 * 109.47332 * 64.85641 * 7 5 4 36 36 H 0.96700 * 114.00144 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.58644 * 294.84788 * 9 5 4 38 38 H 1.08994 * 109.58635 * 174.42145 * 9 5 4 39 39 H 1.08005 * 119.87293 * 359.97438 * 15 14 11 40 40 H 1.08011 * 120.12922 * 180.28155 * 16 15 14 41 41 H 0.97002 * 119.99537 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.13314 * 180.02562 * 26 17 16 43 43 H 1.07999 * 119.87287 * 180.02562 * 27 26 17 44 44 H 1.09006 * 109.58342 * 173.39795 * 28 10 9 45 45 H 1.09002 * 109.58958 * 293.67584 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0441 -0.7215 1.2483 5 6 3.5742 -0.6965 1.2639 6 1 3.9213 0.3367 1.2509 7 6 4.0841 -1.3906 2.5285 8 8 5.5061 -1.2680 2.5988 9 6 4.1056 -1.4300 0.0285 10 7 3.5046 -0.8319 -1.1714 11 16 4.4581 -0.2906 -2.4124 12 8 5.6855 -0.9999 -2.3142 13 8 3.6449 -0.3021 -3.5778 14 6 4.8323 1.3995 -2.0836 15 6 3.9990 2.3956 -2.5686 16 6 4.2784 3.7186 -2.3130 17 6 5.4212 4.0591 -1.5659 18 6 5.7215 5.4154 -1.3020 19 1 4.9334 6.1538 -1.3066 20 6 7.0400 5.8009 -1.0347 21 7 8.0312 5.0123 -1.3622 22 14 7.3847 7.4414 -0.2104 23 1 6.7244 7.4755 1.1193 24 1 8.8499 7.6112 -0.0395 25 1 6.8535 8.5411 -1.0552 26 6 6.2630 3.0399 -1.0835 27 6 5.9614 1.7233 -1.3472 28 6 2.0414 -0.7237 -1.2496 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6979 -1.7550 1.2363 33 1 1.6636 -0.2214 2.1389 34 1 3.6353 -0.9238 3.4053 35 1 3.8115 -2.4456 2.4990 36 1 5.8988 -1.6858 3.3775 37 1 3.8358 -2.4846 0.0854 38 1 5.1900 -1.3301 -0.0175 39 1 3.1249 2.1321 -3.1457 40 1 3.6254 4.4929 -2.6880 41 1 8.9450 5.2794 -1.1767 42 1 7.1424 3.2899 -0.5086 43 1 6.6058 0.9394 -0.9777 44 1 1.7638 -0.1578 -2.1389 45 1 1.6033 -1.7206 -1.2994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398653661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:17 Heat of formation + Delta-G solvation = -149.581909 kcal Electronic energy + Delta-G solvation = -28553.688056 eV Core-core repulsion = 24660.752032 eV Total energy + Delta-G solvation = -3892.936024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.07881 -39.39535 -38.26286 -37.47566 -36.82857 -35.82102 -34.36547 -33.36907 -32.08575 -31.31665 -27.70872 -27.63496 -26.64431 -25.37748 -23.30014 -22.97912 -21.72311 -21.05180 -19.84763 -19.44217 -18.72122 -18.18410 -18.17478 -17.30777 -17.07367 -16.24991 -15.92958 -15.84546 -15.31469 -15.16863 -15.06689 -14.90068 -14.62074 -14.46401 -14.10919 -14.00866 -13.61303 -13.57536 -13.38689 -13.19435 -13.12479 -12.98333 -12.90735 -12.88983 -12.70131 -12.57306 -12.28023 -12.07196 -11.91499 -11.76093 -11.56530 -11.49010 -11.35807 -11.20640 -11.17593 -10.81818 -9.91589 -9.74980 -9.57152 -8.88121 -6.66365 -0.37237 0.47331 1.03487 1.34021 1.43240 1.49247 2.09180 2.14559 2.51636 2.90590 3.33151 3.44052 3.50260 3.79767 3.89474 3.96119 4.02157 4.26381 4.28717 4.31939 4.35921 4.48931 4.59393 4.66039 4.71134 4.76213 4.83514 4.87971 4.89977 4.90647 4.94003 5.06666 5.08673 5.19659 5.22284 5.30573 5.32262 5.46190 5.49873 5.56876 5.57513 5.69872 5.79207 5.91460 6.13056 6.47080 6.66271 6.79306 7.01281 8.07109 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.003969 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.972611 B = 7052.725614 C = 7523.423496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.053 0.947 4 C -0.094 4.094 5 C -0.107 4.107 6 H 0.051 0.949 7 C 0.084 3.916 8 O -0.599 6.599 9 C 0.130 3.870 10 N -0.996 5.996 11 S 2.714 3.286 12 O -1.005 7.005 13 O -0.997 6.997 14 C -0.796 4.796 15 C -0.001 4.001 16 C -0.255 4.255 17 C 0.112 3.888 18 C -0.466 4.466 19 H 0.094 0.906 20 C 0.033 3.967 21 N -0.800 5.800 22 Si 0.994 3.006 23 H -0.256 1.256 24 H -0.265 1.265 25 H -0.253 1.253 26 C -0.206 4.206 27 C -0.018 4.018 28 C 0.119 3.881 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.396 0.604 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.298 0.702 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.216 -9.780 10.417 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 H 0.072 0.928 4 C -0.131 4.131 5 C -0.127 4.127 6 H 0.069 0.931 7 C 0.006 3.994 8 O -0.408 6.408 9 C 0.005 3.995 10 N -0.834 5.834 11 S 2.811 3.189 12 O -0.995 6.995 13 O -0.988 6.988 14 C -0.889 4.889 15 C -0.020 4.020 16 C -0.275 4.275 17 C 0.108 3.892 18 C -0.493 4.493 19 H 0.112 0.888 20 C -0.186 4.186 21 N -0.423 5.423 22 Si 0.813 3.187 23 H -0.180 1.180 24 H -0.189 1.189 25 H -0.177 1.177 26 C -0.226 4.226 27 C -0.039 4.039 28 C -0.006 4.006 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.246 0.754 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.771 -10.046 9.089 17.307 hybrid contribution 0.899 1.266 0.839 1.765 sum -9.872 -8.780 9.927 16.526 Atomic orbital electron populations 1.21728 0.92334 1.03137 1.02445 1.21495 0.97306 0.99205 0.94817 0.92848 1.21465 0.91748 1.02218 0.97705 1.21558 0.97376 0.99675 0.94119 0.93064 1.22231 0.80675 1.00083 0.96385 1.86534 1.21516 1.81836 1.50893 1.21485 0.97426 0.97633 0.82980 1.57660 1.16526 1.75296 1.33917 1.00640 0.71946 0.73538 0.72748 1.93444 1.45870 1.73170 1.87031 1.93438 1.69950 1.88179 1.47187 1.29696 1.10309 1.22028 1.26875 1.20408 0.95711 0.92571 0.93339 1.21241 1.02664 0.95727 1.07860 1.18186 0.90605 0.94067 0.86296 1.20213 0.94955 0.93997 1.40099 0.88778 1.27084 0.94988 1.03736 0.92838 1.69873 1.01833 1.38881 1.31698 0.85065 0.78436 0.75808 0.79423 1.17969 1.18910 1.17685 1.21318 1.02886 0.92043 1.06390 1.20357 0.93430 0.96351 0.93716 1.21731 0.77358 1.02430 0.99057 0.90702 0.91567 0.92564 0.89205 0.90256 0.91884 0.91022 0.75428 0.88924 0.91342 0.85779 0.86872 0.89056 0.87374 0.87756 0.90264 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.21 71.98 0.66 -1.48 16 2 C -0.11 -2.31 2.87 -10.71 -0.03 -2.34 16 3 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.09 -1.68 4.45 30.63 0.14 -1.54 16 5 C -0.11 -2.58 2.58 -10.72 -0.03 -2.61 16 6 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 7 C 0.08 1.55 6.43 71.98 0.46 2.01 16 8 O -0.60 -13.82 13.30 -148.98 -1.98 -15.80 16 9 C 0.13 3.63 5.50 86.36 0.47 4.10 16 10 N -1.00 -31.24 3.29 -513.08 -1.69 -32.93 16 11 S 2.71 111.49 5.68 -56.49 -0.32 111.17 16 12 O -1.00 -46.24 15.97 -128.00 -2.04 -48.29 16 13 O -1.00 -43.14 15.97 -128.00 -2.04 -45.18 16 14 C -0.80 -37.36 6.00 22.46 0.13 -37.22 16 15 C 0.00 -0.02 9.49 22.22 0.21 0.19 16 16 C -0.25 -12.57 9.80 22.73 0.22 -12.35 16 17 C 0.11 6.02 5.58 -21.29 -0.12 5.90 16 18 C -0.47 -23.87 9.06 23.46 0.21 -23.66 16 19 H 0.09 4.49 7.91 -2.91 -0.02 4.47 16 20 C 0.03 1.56 5.14 85.26 0.44 2.00 16 21 N -0.80 -40.42 10.95 21.83 0.24 -40.18 16 22 Si 0.99 35.35 29.60 68.60 2.03 37.38 16 23 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 24 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 25 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 26 C -0.21 -11.18 8.70 22.73 0.20 -10.98 16 27 C -0.02 -0.94 9.49 22.22 0.21 -0.73 16 28 C 0.12 2.95 5.66 86.36 0.49 3.44 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.40 5.00 9.12 -74.06 -0.68 4.33 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.31 6.97 -2.39 -0.02 2.29 16 39 H 0.12 5.08 7.59 -2.91 -0.02 5.06 16 40 H 0.11 5.09 8.06 -2.90 -0.02 5.06 16 41 H 0.30 13.46 8.30 -92.71 -0.77 12.69 16 42 H 0.11 6.02 6.16 -2.91 -0.02 6.00 16 43 H 0.10 5.09 7.60 -2.91 -0.02 5.07 16 44 H 0.08 2.13 7.13 -2.38 -0.02 2.11 16 45 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -70.77 374.41 -1.82 -72.59 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.32 Total: 36.50 kcal Atomic # 6 Polarization: -78.95 SS G_CDS: 3.68 Total: -75.27 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.45 Total: -73.11 kcal Atomic # 8 Polarization: -103.20 SS G_CDS: -6.07 Total: -109.27 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Atomic # 16 Polarization: 111.49 SS G_CDS: -0.32 Total: 111.17 kcal Total: -70.77 -1.82 -72.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398653661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.993 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds