Wall clock time and date at job start Tue Mar 31 2020 23:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.52084 * 2 1 4 4 C 1.53344 * 109.47421 * 120.29400 * 2 1 3 5 5 C 1.53041 * 109.61199 * 58.54867 * 4 2 1 6 6 H 1.08997 * 109.52246 * 301.40560 * 5 4 2 7 7 C 1.52996 * 109.49823 * 181.32179 * 5 4 2 8 8 O 1.42905 * 109.46635 * 175.16423 * 7 5 4 9 9 C 1.53197 * 109.30886 * 61.37261 * 5 4 2 10 10 N 1.46927 * 108.77609 * 305.36753 * 9 5 4 11 11 S 1.65601 * 120.62914 * 233.59013 * 10 9 5 12 12 O 1.42102 * 106.40316 * 23.56151 * 11 10 9 13 13 O 1.42099 * 106.40258 * 156.48040 * 11 10 9 14 14 C 1.76201 * 107.21512 * 270.02012 * 11 10 9 15 15 C 1.38640 * 119.74803 * 269.72411 * 14 11 10 16 16 C 1.37616 * 120.24773 * 179.76470 * 15 14 11 17 17 C 1.40719 * 119.74267 * 0.53265 * 16 15 14 18 18 C 1.41398 * 120.24549 * 179.74507 * 17 16 15 19 19 H 1.08001 * 120.00271 * 204.38252 * 18 17 16 20 20 C 1.39948 * 119.99869 * 24.37492 * 18 17 16 21 21 N 1.30826 * 119.99830 * 17.86768 * 20 18 17 22 22 Si 1.86796 * 120.00101 * 197.86666 * 20 18 17 23 23 H 1.48509 * 109.47020 * 60.00290 * 22 20 18 24 24 H 1.48498 * 109.47436 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47271 * 300.00377 * 22 20 18 26 26 C 1.40718 * 119.51331 * 359.72395 * 17 16 15 27 27 C 1.37615 * 119.74149 * 359.97438 * 26 17 16 28 28 C 1.46928 * 118.73951 * 53.60712 * 10 9 5 29 29 H 1.08998 * 109.47324 * 180.08689 * 1 2 3 30 30 H 1.09005 * 109.46761 * 300.08057 * 1 2 3 31 31 H 1.08995 * 109.47570 * 60.08031 * 1 2 3 32 32 H 1.09004 * 109.42113 * 298.51155 * 4 2 1 33 33 H 1.09003 * 109.42263 * 178.59293 * 4 2 1 34 34 H 1.08998 * 109.47621 * 295.16243 * 7 5 4 35 35 H 1.09000 * 109.46900 * 55.16513 * 7 5 4 36 36 H 0.96700 * 113.99436 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.58323 * 185.58050 * 9 5 4 38 38 H 1.09004 * 109.70354 * 65.22402 * 9 5 4 39 39 H 1.08001 * 119.87529 * 0.02562 * 15 14 11 40 40 H 1.08000 * 120.13176 * 180.27909 * 16 15 14 41 41 H 0.97003 * 119.99899 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.12999 * 180.02562 * 26 17 16 43 43 H 1.08002 * 119.87739 * 179.97438 * 27 26 17 44 44 H 1.09001 * 109.58480 * 66.17953 * 28 10 9 45 45 H 1.09002 * 109.58747 * 186.46189 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7293 1.2483 5 6 1.5033 -2.1620 1.2626 6 1 0.4136 -2.1420 1.2513 7 6 1.9879 -2.8768 2.5255 8 8 1.3950 -4.1752 2.5951 9 6 2.0140 -2.9072 0.0254 10 7 1.6514 -2.1383 -1.1730 11 16 0.8195 -2.8526 -2.4140 12 8 0.1335 -3.9624 -1.8508 13 8 0.1608 -1.8043 -3.1113 14 6 2.0126 -3.5178 -3.5269 15 6 2.4874 -2.7401 -4.5718 16 6 3.4229 -3.2476 -5.4442 17 6 3.8892 -4.5650 -5.2791 18 6 4.8463 -5.0989 -6.1725 19 1 4.9183 -6.1675 -6.3114 20 6 5.7004 -4.2427 -6.8768 21 7 5.8680 -3.0094 -6.4738 22 14 6.6009 -4.8607 -8.3921 23 1 5.6129 -5.2993 -9.4105 24 1 7.4359 -3.7678 -8.9519 25 1 7.4691 -6.0063 -8.0192 26 6 3.3963 -5.3469 -4.2181 27 6 2.4657 -4.8166 -3.3541 28 6 2.0413 -0.7238 -1.2496 29 1 -0.3634 -1.0276 0.0016 30 1 -0.3633 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8906 32 1 1.6994 -0.2042 2.1403 33 1 3.1310 -0.7506 1.2348 34 1 3.0731 -2.9742 2.4943 35 1 1.7002 -2.2984 3.4034 36 1 1.6579 -4.6864 3.3727 37 1 1.5553 -3.8949 -0.0214 38 1 3.0979 -3.0098 0.0796 39 1 2.1247 -1.7308 -4.6992 40 1 3.7948 -2.6386 -6.2549 41 1 6.4603 -2.4160 -6.9617 42 1 3.7476 -6.3590 -4.0818 43 1 2.0856 -5.4149 -2.5393 44 1 3.1274 -0.6462 -1.2980 45 1 1.6026 -0.2715 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398653674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:21 Heat of formation + Delta-G solvation = -145.285563 kcal Electronic energy + Delta-G solvation = -28319.809595 eV Core-core repulsion = 24427.059874 eV Total energy + Delta-G solvation = -3892.749721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.26058 -39.40481 -38.25213 -37.46515 -36.80681 -35.82266 -34.10616 -33.18024 -32.08481 -31.32323 -27.95238 -27.63106 -26.67432 -25.44256 -23.29642 -23.00826 -22.43367 -20.52928 -19.56024 -19.44465 -18.68355 -18.27362 -18.02486 -17.27296 -16.99085 -16.21858 -15.94257 -15.78588 -15.47623 -15.15001 -15.04874 -14.94088 -14.75088 -14.30328 -14.16564 -14.07921 -13.98513 -13.61176 -13.29626 -13.23230 -13.10523 -12.97389 -12.92201 -12.90451 -12.60096 -12.45816 -12.21470 -12.04302 -12.01559 -11.76496 -11.58247 -11.37586 -11.36566 -11.24211 -11.10797 -10.81213 -9.89114 -9.74261 -9.58554 -8.88633 -6.66645 -0.36287 0.46087 1.02428 1.35256 1.44019 1.49558 2.10574 2.15869 2.51315 2.91667 3.35239 3.45721 3.49769 3.79874 3.90273 3.90504 4.06507 4.26455 4.27852 4.28125 4.39817 4.46498 4.59885 4.68473 4.71973 4.75446 4.82317 4.84422 4.91214 4.91735 4.99968 5.05764 5.06675 5.09373 5.21620 5.27641 5.30377 5.41198 5.49521 5.53270 5.56365 5.70524 5.80160 5.91112 6.12665 6.46168 6.65888 6.78454 7.01950 8.06521 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017168 B = 0.003219 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.502644 B = 8697.210450 C = 8953.053278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 H 0.111 0.889 4 C -0.098 4.098 5 C -0.103 4.103 6 H 0.068 0.932 7 C 0.083 3.917 8 O -0.598 6.598 9 C 0.125 3.875 10 N -0.994 5.994 11 S 2.712 3.288 12 O -1.002 7.002 13 O -0.998 6.998 14 C -0.800 4.800 15 C -0.021 4.021 16 C -0.206 4.206 17 C 0.111 3.889 18 C -0.466 4.466 19 H 0.092 0.908 20 C 0.036 3.964 21 N -0.794 5.794 22 Si 0.992 3.008 23 H -0.259 1.259 24 H -0.262 1.262 25 H -0.254 1.254 26 C -0.256 4.256 27 C -0.004 4.004 28 C 0.111 3.889 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.396 0.604 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.299 0.701 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 6.259 14.909 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.116 4.116 3 H 0.129 0.871 4 C -0.136 4.136 5 C -0.123 4.123 6 H 0.087 0.913 7 C 0.005 3.995 8 O -0.406 6.406 9 C 0.000 4.000 10 N -0.832 5.832 11 S 2.810 3.190 12 O -0.993 6.993 13 O -0.989 6.989 14 C -0.893 4.893 15 C -0.041 4.041 16 C -0.226 4.226 17 C 0.108 3.892 18 C -0.493 4.493 19 H 0.110 0.890 20 C -0.184 4.184 21 N -0.416 5.416 22 Si 0.811 3.189 23 H -0.184 1.184 24 H -0.186 1.186 25 H -0.178 1.178 26 C -0.277 4.277 27 C -0.024 4.024 28 C -0.014 4.014 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.246 0.754 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.475 6.667 14.250 15.802 hybrid contribution 1.190 -0.762 -0.684 1.570 sum -0.285 5.905 13.567 14.799 Atomic orbital electron populations 1.21927 0.95865 1.00945 1.02394 1.21513 0.95755 1.00322 0.94001 0.87121 1.21534 1.01370 0.92659 0.98025 1.21561 1.01302 0.96116 0.93324 0.91334 1.22239 0.97012 0.83598 0.96645 1.86517 1.73431 1.29553 1.51141 1.21508 1.00574 0.94503 0.83451 1.57556 1.75296 1.19479 1.30875 1.00652 0.73815 0.72037 0.72458 1.93443 1.72612 1.54453 1.78764 1.93431 1.73585 1.57517 1.74330 1.29737 1.31904 1.06543 1.21079 1.20433 0.93520 0.97310 0.92788 1.21355 1.00881 0.98006 1.02346 1.18191 0.89377 0.92076 0.89567 1.20224 1.13677 0.95987 1.19393 0.88989 1.27008 0.96545 0.94243 1.00614 1.69839 1.28119 1.07312 1.36379 0.85090 0.78160 0.79399 0.76256 1.18372 1.18609 1.17771 1.21271 1.05827 1.01174 0.99394 1.20415 0.92596 0.92686 0.96679 1.21729 1.00836 0.78755 1.00033 0.94811 0.90399 0.93169 0.89137 0.90138 0.92056 0.91129 0.75406 0.90791 0.90639 0.86791 0.86900 0.88933 0.86999 0.86246 0.90226 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.71 71.98 0.63 -2.80 16 2 C -0.10 -1.87 3.23 -10.61 -0.03 -1.91 16 3 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.10 -1.59 4.72 30.72 0.14 -1.44 16 5 C -0.10 -2.23 2.24 -10.72 -0.02 -2.26 16 6 H 0.07 1.74 6.34 -2.39 -0.02 1.73 16 7 C 0.08 1.37 6.43 71.98 0.46 1.84 16 8 O -0.60 -12.26 13.30 -148.98 -1.98 -14.24 16 9 C 0.12 3.56 5.59 86.36 0.48 4.04 16 10 N -0.99 -32.05 2.73 -513.05 -1.40 -33.46 16 11 S 2.71 112.09 5.72 -56.49 -0.32 111.77 16 12 O -1.00 -45.44 15.85 -128.00 -2.03 -47.47 16 13 O -1.00 -44.16 15.84 -128.00 -2.03 -46.18 16 14 C -0.80 -37.33 6.00 22.46 0.13 -37.19 16 15 C -0.02 -1.00 9.49 22.22 0.21 -0.79 16 16 C -0.21 -10.82 8.70 22.73 0.20 -10.62 16 17 C 0.11 5.92 5.58 -21.29 -0.12 5.80 16 18 C -0.47 -23.61 9.05 23.46 0.21 -23.40 16 19 H 0.09 4.39 7.91 -2.91 -0.02 4.37 16 20 C 0.04 1.65 5.14 85.26 0.44 2.09 16 21 N -0.79 -38.18 10.95 21.83 0.24 -37.94 16 22 Si 0.99 34.58 29.59 68.60 2.03 36.61 16 23 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 24 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 25 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 26 C -0.26 -12.73 9.80 22.73 0.22 -12.51 16 27 C 0.00 -0.19 9.49 22.22 0.21 0.02 16 28 C 0.11 2.96 5.86 86.36 0.51 3.46 16 29 H 0.03 0.90 5.97 -2.39 -0.01 0.89 16 30 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.40 4.11 9.12 -74.06 -0.68 3.43 16 37 H 0.07 2.47 6.76 -2.39 -0.02 2.45 16 38 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.11 5.13 7.59 -2.91 -0.02 5.11 16 40 H 0.11 6.01 6.15 -2.91 -0.02 5.99 16 41 H 0.30 12.76 8.30 -92.71 -0.77 11.99 16 42 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 43 H 0.12 5.12 7.60 -2.91 -0.02 5.10 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.08 2.33 6.92 -2.39 -0.02 2.31 16 Total: -1.00 -68.93 369.33 -1.49 -70.42 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.33 Total: 36.16 kcal Atomic # 6 Polarization: -79.34 SS G_CDS: 3.67 Total: -75.66 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.16 Total: -71.40 kcal Atomic # 8 Polarization: -101.85 SS G_CDS: -6.04 Total: -107.89 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Atomic # 16 Polarization: 112.09 SS G_CDS: -0.32 Total: 111.77 kcal Total: -68.93 -1.49 -70.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398653674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.870 kcal (2) G-P(sol) polarization free energy of solvation -68.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds